Experiment: Lacto-N-tetraose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS00110 and HMPREF1058_RS00105 are separated by 17 nucleotides HMPREF1058_RS00105 and HMPREF1058_RS00100 are separated by 18 nucleotides
HMPREF1058_RS00110: HMPREF1058_RS00110 - right-handed parallel beta-helix repeat-containing protein, at 56,367 to 57,851
_RS00110
HMPREF1058_RS00105: HMPREF1058_RS00105 - rhamnogalacturonan acetylesterase, at 57,869 to 59,143
_RS00105
HMPREF1058_RS00100: HMPREF1058_RS00100 - beta-glucuronidase, at 59,162 to 62,029
_RS00100
Position (kb) 57
58
59
60 Strain fitness (log2 ratio) -2
-1
0
1
2 at 56.887 kb on + strand, within HMPREF1058_RS00110 at 57.057 kb on + strand, within HMPREF1058_RS00110 at 57.104 kb on + strand, within HMPREF1058_RS00110 at 57.138 kb on - strand, within HMPREF1058_RS00110 at 57.165 kb on - strand, within HMPREF1058_RS00110 at 57.165 kb on - strand, within HMPREF1058_RS00110 at 57.178 kb on + strand, within HMPREF1058_RS00110 at 57.234 kb on + strand, within HMPREF1058_RS00110 at 57.237 kb on - strand, within HMPREF1058_RS00110 at 57.237 kb on - strand, within HMPREF1058_RS00110 at 57.260 kb on + strand, within HMPREF1058_RS00110 at 57.341 kb on + strand, within HMPREF1058_RS00110 at 57.342 kb on - strand, within HMPREF1058_RS00110 at 57.375 kb on - strand, within HMPREF1058_RS00110 at 57.389 kb on + strand, within HMPREF1058_RS00110 at 57.477 kb on + strand, within HMPREF1058_RS00110 at 57.478 kb on - strand, within HMPREF1058_RS00110 at 57.531 kb on + strand, within HMPREF1058_RS00110 at 57.536 kb on + strand, within HMPREF1058_RS00110 at 57.810 kb on + strand at 57.811 kb on - strand at 57.831 kb on + strand at 57.831 kb on + strand at 57.831 kb on + strand at 57.835 kb on - strand at 57.860 kb on - strand at 57.871 kb on - strand at 57.989 kb on - strand at 58.022 kb on - strand, within HMPREF1058_RS00105 at 58.064 kb on - strand, within HMPREF1058_RS00105 at 58.116 kb on - strand, within HMPREF1058_RS00105 at 58.116 kb on - strand, within HMPREF1058_RS00105 at 58.358 kb on - strand, within HMPREF1058_RS00105 at 58.368 kb on + strand, within HMPREF1058_RS00105 at 58.368 kb on + strand, within HMPREF1058_RS00105 at 58.369 kb on - strand, within HMPREF1058_RS00105 at 58.513 kb on - strand, within HMPREF1058_RS00105 at 58.592 kb on + strand, within HMPREF1058_RS00105 at 58.633 kb on + strand, within HMPREF1058_RS00105 at 58.634 kb on - strand, within HMPREF1058_RS00105 at 58.634 kb on - strand, within HMPREF1058_RS00105 at 58.693 kb on + strand, within HMPREF1058_RS00105 at 58.762 kb on + strand, within HMPREF1058_RS00105 at 58.792 kb on + strand, within HMPREF1058_RS00105 at 59.010 kb on + strand, within HMPREF1058_RS00105 at 59.035 kb on + strand at 59.066 kb on - strand at 59.161 kb on - strand at 59.213 kb on + strand at 59.213 kb on + strand at 59.315 kb on - strand at 59.393 kb on + strand at 59.413 kb on + strand at 59.542 kb on - strand, within HMPREF1058_RS00100 at 59.585 kb on + strand, within HMPREF1058_RS00100 at 59.585 kb on + strand, within HMPREF1058_RS00100 at 59.586 kb on - strand, within HMPREF1058_RS00100 at 59.673 kb on + strand, within HMPREF1058_RS00100 at 59.698 kb on + strand, within HMPREF1058_RS00100 at 59.762 kb on + strand, within HMPREF1058_RS00100 at 59.843 kb on + strand, within HMPREF1058_RS00100 at 59.844 kb on - strand, within HMPREF1058_RS00100 at 59.912 kb on + strand, within HMPREF1058_RS00100 at 59.958 kb on + strand, within HMPREF1058_RS00100 at 59.960 kb on + strand, within HMPREF1058_RS00100 at 59.961 kb on - strand, within HMPREF1058_RS00100 at 59.981 kb on + strand, within HMPREF1058_RS00100 at 59.987 kb on - strand, within HMPREF1058_RS00100 at 59.987 kb on - strand, within HMPREF1058_RS00100 at 59.987 kb on - strand, within HMPREF1058_RS00100 at 59.989 kb on - strand, within HMPREF1058_RS00100 at 60.068 kb on - strand, within HMPREF1058_RS00100 at 60.068 kb on - strand, within HMPREF1058_RS00100 at 60.103 kb on + strand, within HMPREF1058_RS00100 at 60.139 kb on + strand, within HMPREF1058_RS00100
Per-strain Table
Position Strand Gene LocusTag Fraction Lacto-N-tetraose 10 mg/mL (C) remove 56,887 + HMPREF1058_RS00110 0.35 +0.8 57,057 + HMPREF1058_RS00110 0.46 -1.1 57,104 + HMPREF1058_RS00110 0.50 +0.7 57,138 - HMPREF1058_RS00110 0.52 +0.6 57,165 - HMPREF1058_RS00110 0.54 -1.0 57,165 - HMPREF1058_RS00110 0.54 +0.3 57,178 + HMPREF1058_RS00110 0.55 -0.3 57,234 + HMPREF1058_RS00110 0.58 -1.6 57,237 - HMPREF1058_RS00110 0.59 -1.4 57,237 - HMPREF1058_RS00110 0.59 +1.8 57,260 + HMPREF1058_RS00110 0.60 +1.6 57,341 + HMPREF1058_RS00110 0.66 -1.4 57,342 - HMPREF1058_RS00110 0.66 -1.3 57,375 - HMPREF1058_RS00110 0.68 -1.3 57,389 + HMPREF1058_RS00110 0.69 -1.4 57,477 + HMPREF1058_RS00110 0.75 +1.6 57,478 - HMPREF1058_RS00110 0.75 -0.8 57,531 + HMPREF1058_RS00110 0.78 +0.2 57,536 + HMPREF1058_RS00110 0.79 -0.4 57,810 + +0.2 57,811 - +0.8 57,831 + +1.8 57,831 + -0.7 57,831 + -0.8 57,835 - +0.0 57,860 - -1.8 57,871 - -1.8 57,989 - +0.3 58,022 - HMPREF1058_RS00105 0.12 -1.2 58,064 - HMPREF1058_RS00105 0.15 -1.6 58,116 - HMPREF1058_RS00105 0.19 +0.6 58,116 - HMPREF1058_RS00105 0.19 +0.0 58,358 - HMPREF1058_RS00105 0.38 +0.4 58,368 + HMPREF1058_RS00105 0.39 -1.3 58,368 + HMPREF1058_RS00105 0.39 -1.4 58,369 - HMPREF1058_RS00105 0.39 +1.8 58,513 - HMPREF1058_RS00105 0.51 -1.2 58,592 + HMPREF1058_RS00105 0.57 -0.4 58,633 + HMPREF1058_RS00105 0.60 -0.8 58,634 - HMPREF1058_RS00105 0.60 -0.7 58,634 - HMPREF1058_RS00105 0.60 +0.2 58,693 + HMPREF1058_RS00105 0.65 +0.4 58,762 + HMPREF1058_RS00105 0.70 +1.0 58,792 + HMPREF1058_RS00105 0.72 -0.4 59,010 + HMPREF1058_RS00105 0.89 -0.0 59,035 + +0.1 59,066 - -0.6 59,161 - -2.0 59,213 + +0.1 59,213 + -0.7 59,315 - +0.7 59,393 + -0.3 59,413 + -1.2 59,542 - HMPREF1058_RS00100 0.13 +1.9 59,585 + HMPREF1058_RS00100 0.15 -1.4 59,585 + HMPREF1058_RS00100 0.15 -0.4 59,586 - HMPREF1058_RS00100 0.15 -1.5 59,673 + HMPREF1058_RS00100 0.18 +0.4 59,698 + HMPREF1058_RS00100 0.19 -1.2 59,762 + HMPREF1058_RS00100 0.21 -1.0 59,843 + HMPREF1058_RS00100 0.24 +2.2 59,844 - HMPREF1058_RS00100 0.24 +1.0 59,912 + HMPREF1058_RS00100 0.26 -1.1 59,958 + HMPREF1058_RS00100 0.28 -1.3 59,960 + HMPREF1058_RS00100 0.28 -1.4 59,961 - HMPREF1058_RS00100 0.28 +0.4 59,981 + HMPREF1058_RS00100 0.29 -2.1 59,987 - HMPREF1058_RS00100 0.29 -0.4 59,987 - HMPREF1058_RS00100 0.29 -1.1 59,987 - HMPREF1058_RS00100 0.29 +1.4 59,989 - HMPREF1058_RS00100 0.29 -0.3 60,068 - HMPREF1058_RS00100 0.32 +0.1 60,068 - HMPREF1058_RS00100 0.32 -1.1 60,103 + HMPREF1058_RS00100 0.33 +0.0 60,139 + HMPREF1058_RS00100 0.34 +0.4
Or see this region's nucleotide sequence