Experiment: Promitor 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS07015 and HMPREF1058_RS07010 are separated by 49 nucleotides HMPREF1058_RS07010 and HMPREF1058_RS07005 are separated by 200 nucleotides
HMPREF1058_RS07015: HMPREF1058_RS07015 - EFR1 family ferrodoxin, at 334,740 to 335,507
_RS07015
HMPREF1058_RS07010: HMPREF1058_RS07010 - endolytic transglycosylase MltG, at 335,557 to 336,591
_RS07010
HMPREF1058_RS07005: HMPREF1058_RS07005 - alpha-N-arabinofuranosidase, at 336,792 to 338,315
_RS07005
Position (kb) 335
336
337 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 334.558 kb on + strand at 334.558 kb on + strand at 334.559 kb on - strand at 334.614 kb on + strand at 334.681 kb on - strand at 334.681 kb on - strand at 334.683 kb on - strand at 334.739 kb on + strand at 334.767 kb on - strand at 334.825 kb on + strand, within HMPREF1058_RS07015 at 334.826 kb on - strand, within HMPREF1058_RS07015 at 334.826 kb on - strand, within HMPREF1058_RS07015 at 334.829 kb on + strand, within HMPREF1058_RS07015 at 334.837 kb on + strand, within HMPREF1058_RS07015 at 334.855 kb on - strand, within HMPREF1058_RS07015 at 334.898 kb on - strand, within HMPREF1058_RS07015 at 334.899 kb on + strand at 334.925 kb on - strand, within HMPREF1058_RS07015 at 334.946 kb on - strand, within HMPREF1058_RS07015 at 334.965 kb on + strand, within HMPREF1058_RS07015 at 334.998 kb on - strand, within HMPREF1058_RS07015 at 334.998 kb on - strand, within HMPREF1058_RS07015 at 335.084 kb on + strand, within HMPREF1058_RS07015 at 335.084 kb on + strand, within HMPREF1058_RS07015 at 335.084 kb on + strand, within HMPREF1058_RS07015 at 335.085 kb on - strand, within HMPREF1058_RS07015 at 335.085 kb on - strand, within HMPREF1058_RS07015 at 335.088 kb on + strand, within HMPREF1058_RS07015 at 335.089 kb on - strand, within HMPREF1058_RS07015 at 335.113 kb on + strand, within HMPREF1058_RS07015 at 335.114 kb on - strand, within HMPREF1058_RS07015 at 335.114 kb on - strand, within HMPREF1058_RS07015 at 335.126 kb on + strand, within HMPREF1058_RS07015 at 335.128 kb on + strand, within HMPREF1058_RS07015 at 335.128 kb on + strand, within HMPREF1058_RS07015 at 335.128 kb on + strand, within HMPREF1058_RS07015 at 335.128 kb on + strand, within HMPREF1058_RS07015 at 335.213 kb on + strand, within HMPREF1058_RS07015 at 335.214 kb on - strand, within HMPREF1058_RS07015 at 335.250 kb on + strand, within HMPREF1058_RS07015 at 335.328 kb on - strand, within HMPREF1058_RS07015 at 335.328 kb on - strand, within HMPREF1058_RS07015 at 335.361 kb on - strand, within HMPREF1058_RS07015 at 335.362 kb on + strand, within HMPREF1058_RS07015 at 335.362 kb on + strand, within HMPREF1058_RS07015 at 335.362 kb on + strand, within HMPREF1058_RS07015 at 335.363 kb on - strand, within HMPREF1058_RS07015 at 335.394 kb on - strand, within HMPREF1058_RS07015 at 335.478 kb on + strand at 335.506 kb on - strand at 335.509 kb on + strand at 335.510 kb on - strand at 335.521 kb on - strand at 335.542 kb on + strand at 335.543 kb on - strand at 335.671 kb on - strand, within HMPREF1058_RS07010 at 335.671 kb on - strand, within HMPREF1058_RS07010 at 335.676 kb on + strand, within HMPREF1058_RS07010 at 335.676 kb on + strand, within HMPREF1058_RS07010 at 335.676 kb on + strand, within HMPREF1058_RS07010 at 335.677 kb on - strand, within HMPREF1058_RS07010 at 335.677 kb on - strand, within HMPREF1058_RS07010 at 335.693 kb on + strand, within HMPREF1058_RS07010 at 335.693 kb on + strand, within HMPREF1058_RS07010 at 335.694 kb on - strand, within HMPREF1058_RS07010 at 335.772 kb on + strand, within HMPREF1058_RS07010 at 335.773 kb on - strand, within HMPREF1058_RS07010 at 335.775 kb on - strand, within HMPREF1058_RS07010 at 335.875 kb on - strand, within HMPREF1058_RS07010 at 335.977 kb on - strand, within HMPREF1058_RS07010 at 336.069 kb on + strand, within HMPREF1058_RS07010 at 336.093 kb on + strand, within HMPREF1058_RS07010 at 336.126 kb on + strand, within HMPREF1058_RS07010 at 336.126 kb on + strand at 336.235 kb on + strand, within HMPREF1058_RS07010 at 336.340 kb on + strand, within HMPREF1058_RS07010 at 336.341 kb on - strand, within HMPREF1058_RS07010 at 336.390 kb on + strand, within HMPREF1058_RS07010 at 336.397 kb on - strand, within HMPREF1058_RS07010 at 336.428 kb on - strand, within HMPREF1058_RS07010 at 336.454 kb on + strand, within HMPREF1058_RS07010 at 336.456 kb on + strand, within HMPREF1058_RS07010 at 336.458 kb on + strand, within HMPREF1058_RS07010 at 336.459 kb on - strand, within HMPREF1058_RS07010 at 336.459 kb on - strand, within HMPREF1058_RS07010 at 336.462 kb on + strand, within HMPREF1058_RS07010 at 336.464 kb on + strand, within HMPREF1058_RS07010 at 336.504 kb on - strand at 336.509 kb on + strand at 336.509 kb on + strand at 336.510 kb on - strand at 336.510 kb on - strand at 336.510 kb on - strand at 336.511 kb on + strand at 336.512 kb on - strand at 336.514 kb on - strand at 336.514 kb on - strand at 336.550 kb on - strand at 336.559 kb on - strand at 336.559 kb on - strand at 336.565 kb on + strand at 336.615 kb on - strand at 336.623 kb on - strand at 336.625 kb on - strand at 336.625 kb on - strand at 336.704 kb on + strand at 336.704 kb on + strand at 336.705 kb on - strand at 336.746 kb on + strand at 336.748 kb on + strand at 336.792 kb on - strand at 336.853 kb on + strand at 336.854 kb on - strand at 336.926 kb on + strand at 336.926 kb on + strand at 336.927 kb on - strand at 337.063 kb on - strand, within HMPREF1058_RS07005 at 337.146 kb on - strand, within HMPREF1058_RS07005 at 337.186 kb on + strand, within HMPREF1058_RS07005 at 337.201 kb on - strand, within HMPREF1058_RS07005 at 337.201 kb on - strand, within HMPREF1058_RS07005 at 337.216 kb on + strand, within HMPREF1058_RS07005 at 337.258 kb on - strand, within HMPREF1058_RS07005 at 337.345 kb on + strand, within HMPREF1058_RS07005 at 337.349 kb on + strand, within HMPREF1058_RS07005 at 337.393 kb on - strand, within HMPREF1058_RS07005 at 337.434 kb on + strand, within HMPREF1058_RS07005 at 337.434 kb on + strand, within HMPREF1058_RS07005 at 337.434 kb on + strand, within HMPREF1058_RS07005 at 337.435 kb on - strand, within HMPREF1058_RS07005 at 337.435 kb on - strand, within HMPREF1058_RS07005 at 337.479 kb on + strand, within HMPREF1058_RS07005 at 337.551 kb on + strand, within HMPREF1058_RS07005
Per-strain Table
Position Strand Gene LocusTag Fraction Promitor 10 mg/mL (C) remove 334,558 + +1.3 334,558 + +0.6 334,559 - -1.2 334,614 + -0.6 334,681 - +1.6 334,681 - -0.4 334,683 - +0.5 334,739 + -1.4 334,767 - -1.1 334,825 + HMPREF1058_RS07015 0.11 +1.0 334,826 - HMPREF1058_RS07015 0.11 -0.4 334,826 - HMPREF1058_RS07015 0.11 -1.4 334,829 + HMPREF1058_RS07015 0.12 +0.0 334,837 + HMPREF1058_RS07015 0.13 -0.0 334,855 - HMPREF1058_RS07015 0.15 -0.4 334,898 - HMPREF1058_RS07015 0.21 -2.3 334,899 + -0.4 334,925 - HMPREF1058_RS07015 0.24 -0.3 334,946 - HMPREF1058_RS07015 0.27 -1.2 334,965 + HMPREF1058_RS07015 0.29 +0.6 334,998 - HMPREF1058_RS07015 0.34 +0.5 334,998 - HMPREF1058_RS07015 0.34 -0.4 335,084 + HMPREF1058_RS07015 0.45 +0.3 335,084 + HMPREF1058_RS07015 0.45 +0.3 335,084 + HMPREF1058_RS07015 0.45 -0.2 335,085 - HMPREF1058_RS07015 0.45 -0.0 335,085 - HMPREF1058_RS07015 0.45 -0.3 335,088 + HMPREF1058_RS07015 0.45 -0.2 335,089 - HMPREF1058_RS07015 0.45 +1.2 335,113 + HMPREF1058_RS07015 0.49 +0.4 335,114 - HMPREF1058_RS07015 0.49 -0.3 335,114 - HMPREF1058_RS07015 0.49 +1.3 335,126 + HMPREF1058_RS07015 0.50 -0.4 335,128 + HMPREF1058_RS07015 0.51 -0.2 335,128 + HMPREF1058_RS07015 0.51 -1.2 335,128 + HMPREF1058_RS07015 0.51 -0.3 335,128 + HMPREF1058_RS07015 0.51 -0.3 335,213 + HMPREF1058_RS07015 0.62 -0.2 335,214 - HMPREF1058_RS07015 0.62 +1.0 335,250 + HMPREF1058_RS07015 0.66 -0.5 335,328 - HMPREF1058_RS07015 0.77 -0.3 335,328 - HMPREF1058_RS07015 0.77 -0.8 335,361 - HMPREF1058_RS07015 0.81 -0.9 335,362 + HMPREF1058_RS07015 0.81 +0.3 335,362 + HMPREF1058_RS07015 0.81 +0.9 335,362 + HMPREF1058_RS07015 0.81 -0.1 335,363 - HMPREF1058_RS07015 0.81 +1.6 335,394 - HMPREF1058_RS07015 0.85 -1.5 335,478 + -0.1 335,506 - -0.3 335,509 + +1.4 335,510 - -1.1 335,521 - -1.3 335,542 + +0.7 335,543 - +0.6 335,671 - HMPREF1058_RS07010 0.11 +1.3 335,671 - HMPREF1058_RS07010 0.11 +0.9 335,676 + HMPREF1058_RS07010 0.11 +1.0 335,676 + HMPREF1058_RS07010 0.11 +1.7 335,676 + HMPREF1058_RS07010 0.11 +0.4 335,677 - HMPREF1058_RS07010 0.12 +1.2 335,677 - HMPREF1058_RS07010 0.12 +1.3 335,693 + HMPREF1058_RS07010 0.13 +1.3 335,693 + HMPREF1058_RS07010 0.13 +3.2 335,694 - HMPREF1058_RS07010 0.13 +0.2 335,772 + HMPREF1058_RS07010 0.21 +1.2 335,773 - HMPREF1058_RS07010 0.21 +1.6 335,775 - HMPREF1058_RS07010 0.21 +0.5 335,875 - HMPREF1058_RS07010 0.31 +1.0 335,977 - HMPREF1058_RS07010 0.41 +1.3 336,069 + HMPREF1058_RS07010 0.49 -0.0 336,093 + HMPREF1058_RS07010 0.52 +1.4 336,126 + HMPREF1058_RS07010 0.55 +0.9 336,126 + +0.6 336,235 + HMPREF1058_RS07010 0.66 +0.4 336,340 + HMPREF1058_RS07010 0.76 +0.5 336,341 - HMPREF1058_RS07010 0.76 +2.2 336,390 + HMPREF1058_RS07010 0.80 +0.6 336,397 - HMPREF1058_RS07010 0.81 +0.8 336,428 - HMPREF1058_RS07010 0.84 -0.5 336,454 + HMPREF1058_RS07010 0.87 +0.4 336,456 + HMPREF1058_RS07010 0.87 +1.3 336,458 + HMPREF1058_RS07010 0.87 -0.4 336,459 - HMPREF1058_RS07010 0.87 +1.8 336,459 - HMPREF1058_RS07010 0.87 +3.7 336,462 + HMPREF1058_RS07010 0.87 +0.5 336,464 + HMPREF1058_RS07010 0.88 +1.0 336,504 - -0.3 336,509 + +0.8 336,509 + -1.1 336,510 - -0.1 336,510 - +1.6 336,510 - +1.3 336,511 + +1.8 336,512 - +0.9 336,514 - +1.7 336,514 - +0.3 336,550 - +1.8 336,559 - -1.0 336,559 - +0.5 336,565 + -0.0 336,615 - -0.1 336,623 - +2.2 336,625 - +0.1 336,625 - -0.1 336,704 + -0.5 336,704 + +0.5 336,705 - -1.7 336,746 + +1.3 336,748 + -0.7 336,792 - -1.2 336,853 + -0.5 336,854 - -1.6 336,926 + +0.6 336,926 + -1.7 336,927 - +0.6 337,063 - HMPREF1058_RS07005 0.18 +2.9 337,146 - HMPREF1058_RS07005 0.23 -0.6 337,186 + HMPREF1058_RS07005 0.26 -0.1 337,201 - HMPREF1058_RS07005 0.27 +0.2 337,201 - HMPREF1058_RS07005 0.27 +0.3 337,216 + HMPREF1058_RS07005 0.28 -0.8 337,258 - HMPREF1058_RS07005 0.31 +0.3 337,345 + HMPREF1058_RS07005 0.36 -0.5 337,349 + HMPREF1058_RS07005 0.37 +0.7 337,393 - HMPREF1058_RS07005 0.39 -0.8 337,434 + HMPREF1058_RS07005 0.42 +0.1 337,434 + HMPREF1058_RS07005 0.42 -2.2 337,434 + HMPREF1058_RS07005 0.42 +0.5 337,435 - HMPREF1058_RS07005 0.42 +0.9 337,435 - HMPREF1058_RS07005 0.42 +1.2 337,479 + HMPREF1058_RS07005 0.45 -0.4 337,551 + HMPREF1058_RS07005 0.50 -1.3
Or see this region's nucleotide sequence