Experiment: PreticX 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS05435 and HMPREF1058_RS05430 are separated by 50 nucleotides HMPREF1058_RS05430 and HMPREF1058_RS05425 are separated by 28 nucleotides HMPREF1058_RS05425 and HMPREF1058_RS05420 are separated by 13 nucleotides HMPREF1058_RS05420 and HMPREF1058_RS05415 are separated by 76 nucleotides
HMPREF1058_RS05435: HMPREF1058_RS05435 - MarC family protein, at 167,078 to 167,725
_RS05435
HMPREF1058_RS05430: HMPREF1058_RS05430 - ferritin, at 167,776 to 168,258
_RS05430
HMPREF1058_RS05425: HMPREF1058_RS05425 - class I fructose-bisphosphate aldolase, at 168,287 to 169,336
_RS05425
HMPREF1058_RS05420: HMPREF1058_RS05420 - 2,3-diphosphoglycerate-dependent phosphoglycerate mutase, at 169,350 to 170,099
_RS05420
HMPREF1058_RS05415: HMPREF1058_RS05415 - Hsp20/alpha crystallin family protein, at 170,176 to 170,604
_RS05415
Position (kb) 168
169
170 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 167.318 kb on - strand, within HMPREF1058_RS05435 at 167.344 kb on + strand, within HMPREF1058_RS05435 at 167.345 kb on - strand, within HMPREF1058_RS05435 at 167.410 kb on + strand, within HMPREF1058_RS05435 at 167.472 kb on + strand, within HMPREF1058_RS05435 at 167.514 kb on + strand, within HMPREF1058_RS05435 at 167.736 kb on + strand at 167.825 kb on + strand, within HMPREF1058_RS05430 at 167.847 kb on - strand, within HMPREF1058_RS05430 at 167.936 kb on - strand, within HMPREF1058_RS05430 at 167.951 kb on - strand, within HMPREF1058_RS05430 at 168.093 kb on - strand, within HMPREF1058_RS05430 at 168.174 kb on - strand, within HMPREF1058_RS05430 at 168.225 kb on + strand at 168.257 kb on - strand at 168.284 kb on - strand at 168.304 kb on - strand at 168.327 kb on - strand at 168.343 kb on + strand at 168.364 kb on + strand at 168.390 kb on + strand at 168.391 kb on - strand at 168.395 kb on - strand, within HMPREF1058_RS05425 at 168.421 kb on + strand, within HMPREF1058_RS05425 at 168.422 kb on - strand, within HMPREF1058_RS05425 at 168.422 kb on - strand, within HMPREF1058_RS05425 at 168.423 kb on + strand, within HMPREF1058_RS05425 at 168.424 kb on - strand, within HMPREF1058_RS05425 at 168.514 kb on - strand, within HMPREF1058_RS05425 at 168.514 kb on - strand, within HMPREF1058_RS05425 at 168.646 kb on + strand, within HMPREF1058_RS05425 at 168.647 kb on - strand, within HMPREF1058_RS05425 at 168.823 kb on - strand, within HMPREF1058_RS05425 at 168.868 kb on + strand, within HMPREF1058_RS05425 at 168.877 kb on - strand, within HMPREF1058_RS05425 at 168.877 kb on - strand, within HMPREF1058_RS05425 at 168.885 kb on - strand, within HMPREF1058_RS05425 at 169.057 kb on + strand, within HMPREF1058_RS05425 at 169.057 kb on + strand, within HMPREF1058_RS05425 at 169.061 kb on + strand, within HMPREF1058_RS05425 at 169.207 kb on - strand, within HMPREF1058_RS05425 at 169.306 kb on - strand at 169.306 kb on - strand at 169.345 kb on + strand at 169.345 kb on + strand at 169.360 kb on + strand at 169.370 kb on - strand at 169.370 kb on - strand at 169.433 kb on - strand, within HMPREF1058_RS05420 at 169.510 kb on - strand, within HMPREF1058_RS05420 at 169.640 kb on + strand, within HMPREF1058_RS05420 at 169.678 kb on + strand, within HMPREF1058_RS05420 at 169.679 kb on - strand, within HMPREF1058_RS05420 at 169.699 kb on - strand, within HMPREF1058_RS05420 at 169.815 kb on - strand, within HMPREF1058_RS05420 at 169.867 kb on - strand, within HMPREF1058_RS05420 at 169.950 kb on - strand, within HMPREF1058_RS05420 at 169.984 kb on - strand, within HMPREF1058_RS05420 at 170.148 kb on + strand at 170.303 kb on - strand, within HMPREF1058_RS05415 at 170.303 kb on - strand, within HMPREF1058_RS05415
Per-strain Table
Position Strand Gene LocusTag Fraction PreticX 10 mg/mL (C) remove 167,318 - HMPREF1058_RS05435 0.37 -0.4 167,344 + HMPREF1058_RS05435 0.41 -2.0 167,345 - HMPREF1058_RS05435 0.41 +0.1 167,410 + HMPREF1058_RS05435 0.51 +0.6 167,472 + HMPREF1058_RS05435 0.61 -1.0 167,514 + HMPREF1058_RS05435 0.67 -0.1 167,736 + +0.2 167,825 + HMPREF1058_RS05430 0.10 -0.3 167,847 - HMPREF1058_RS05430 0.15 +1.1 167,936 - HMPREF1058_RS05430 0.33 +0.2 167,951 - HMPREF1058_RS05430 0.36 -0.9 168,093 - HMPREF1058_RS05430 0.66 -1.5 168,174 - HMPREF1058_RS05430 0.82 -1.2 168,225 + -0.7 168,257 - +3.7 168,284 - -0.7 168,304 - +1.1 168,327 - +0.9 168,343 + -1.1 168,364 + +0.4 168,390 + -0.5 168,391 - -0.2 168,395 - HMPREF1058_RS05425 0.10 -0.6 168,421 + HMPREF1058_RS05425 0.13 +0.5 168,422 - HMPREF1058_RS05425 0.13 +0.2 168,422 - HMPREF1058_RS05425 0.13 -0.2 168,423 + HMPREF1058_RS05425 0.13 +0.3 168,424 - HMPREF1058_RS05425 0.13 -0.6 168,514 - HMPREF1058_RS05425 0.22 +1.5 168,514 - HMPREF1058_RS05425 0.22 -0.4 168,646 + HMPREF1058_RS05425 0.34 +0.8 168,647 - HMPREF1058_RS05425 0.34 +0.0 168,823 - HMPREF1058_RS05425 0.51 +1.7 168,868 + HMPREF1058_RS05425 0.55 +4.7 168,877 - HMPREF1058_RS05425 0.56 +1.8 168,877 - HMPREF1058_RS05425 0.56 +1.0 168,885 - HMPREF1058_RS05425 0.57 -0.7 169,057 + HMPREF1058_RS05425 0.73 -1.8 169,057 + HMPREF1058_RS05425 0.73 +0.4 169,061 + HMPREF1058_RS05425 0.74 -1.2 169,207 - HMPREF1058_RS05425 0.88 +0.9 169,306 - +0.6 169,306 - +2.5 169,345 + -1.9 169,345 + -0.4 169,360 + -0.5 169,370 - +0.1 169,370 - -0.4 169,433 - HMPREF1058_RS05420 0.11 -0.4 169,510 - HMPREF1058_RS05420 0.21 +0.1 169,640 + HMPREF1058_RS05420 0.39 +0.3 169,678 + HMPREF1058_RS05420 0.44 -1.3 169,679 - HMPREF1058_RS05420 0.44 +0.7 169,699 - HMPREF1058_RS05420 0.47 -0.6 169,815 - HMPREF1058_RS05420 0.62 +0.3 169,867 - HMPREF1058_RS05420 0.69 -1.0 169,950 - HMPREF1058_RS05420 0.80 -0.7 169,984 - HMPREF1058_RS05420 0.85 +0.3 170,148 + +0.7 170,303 - HMPREF1058_RS05415 0.30 -0.6 170,303 - HMPREF1058_RS05415 0.30 +1.1
Or see this region's nucleotide sequence