Experiment: ISOT LC742-071714 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS06410 and HMPREF1058_RS06405 are separated by 131 nucleotides HMPREF1058_RS06405 and HMPREF1058_RS06400 are separated by 2 nucleotides
HMPREF1058_RS06410: HMPREF1058_RS06410 - elongation factor 4, at 482,771 to 484,552
_RS06410
HMPREF1058_RS06405: HMPREF1058_RS06405 - Na+/H+ antiporter NhaA, at 484,684 to 486,024
_RS06405
HMPREF1058_RS06400: HMPREF1058_RS06400 - PAS domain-containing sensor histidine kinase, at 486,027 to 488,300
_RS06400
Position (kb) 484
485
486
487 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 483.841 kb on + strand, within HMPREF1058_RS06410 at 484.157 kb on + strand, within HMPREF1058_RS06410 at 484.172 kb on + strand, within HMPREF1058_RS06410 at 484.294 kb on + strand, within HMPREF1058_RS06410 at 484.295 kb on - strand, within HMPREF1058_RS06410 at 484.372 kb on + strand, within HMPREF1058_RS06410 at 484.477 kb on + strand at 484.562 kb on - strand at 484.738 kb on + strand at 484.743 kb on + strand at 484.744 kb on - strand at 484.744 kb on - strand at 484.746 kb on + strand at 484.816 kb on - strand at 484.820 kb on - strand, within HMPREF1058_RS06405 at 484.820 kb on - strand, within HMPREF1058_RS06405 at 484.820 kb on - strand, within HMPREF1058_RS06405 at 484.961 kb on + strand, within HMPREF1058_RS06405 at 485.059 kb on + strand, within HMPREF1058_RS06405 at 485.063 kb on - strand, within HMPREF1058_RS06405 at 485.347 kb on - strand at 485.365 kb on - strand, within HMPREF1058_RS06405 at 485.450 kb on - strand, within HMPREF1058_RS06405 at 485.460 kb on + strand, within HMPREF1058_RS06405 at 485.460 kb on + strand, within HMPREF1058_RS06405 at 485.460 kb on + strand, within HMPREF1058_RS06405 at 485.460 kb on + strand, within HMPREF1058_RS06405 at 485.460 kb on + strand, within HMPREF1058_RS06405 at 485.461 kb on - strand, within HMPREF1058_RS06405 at 485.461 kb on - strand, within HMPREF1058_RS06405 at 485.464 kb on + strand, within HMPREF1058_RS06405 at 485.465 kb on - strand, within HMPREF1058_RS06405 at 485.465 kb on - strand, within HMPREF1058_RS06405 at 485.586 kb on - strand, within HMPREF1058_RS06405 at 485.633 kb on - strand, within HMPREF1058_RS06405 at 485.765 kb on - strand, within HMPREF1058_RS06405 at 485.786 kb on + strand, within HMPREF1058_RS06405 at 486.022 kb on + strand at 486.221 kb on + strand at 486.354 kb on + strand, within HMPREF1058_RS06400 at 486.355 kb on - strand, within HMPREF1058_RS06400 at 486.355 kb on - strand, within HMPREF1058_RS06400 at 486.413 kb on + strand, within HMPREF1058_RS06400 at 486.485 kb on + strand, within HMPREF1058_RS06400 at 486.499 kb on - strand, within HMPREF1058_RS06400 at 486.507 kb on + strand, within HMPREF1058_RS06400 at 486.508 kb on - strand, within HMPREF1058_RS06400 at 486.891 kb on + strand, within HMPREF1058_RS06400 at 486.892 kb on - strand, within HMPREF1058_RS06400 at 486.940 kb on + strand, within HMPREF1058_RS06400 at 486.941 kb on - strand, within HMPREF1058_RS06400 at 486.941 kb on - strand, within HMPREF1058_RS06400 at 486.941 kb on - strand, within HMPREF1058_RS06400 at 486.948 kb on + strand, within HMPREF1058_RS06400
Per-strain Table
Position Strand Gene LocusTag Fraction ISOT LC742-071714 10 mg/mL (C) remove 483,841 + HMPREF1058_RS06410 0.60 -0.5 484,157 + HMPREF1058_RS06410 0.78 -0.5 484,172 + HMPREF1058_RS06410 0.79 +0.1 484,294 + HMPREF1058_RS06410 0.85 -0.5 484,295 - HMPREF1058_RS06410 0.86 +0.6 484,372 + HMPREF1058_RS06410 0.90 +1.1 484,477 + -0.6 484,562 - -1.9 484,738 + -0.6 484,743 + -0.0 484,744 - -1.0 484,744 - +0.5 484,746 + -0.2 484,816 - +0.6 484,820 - HMPREF1058_RS06405 0.10 +0.6 484,820 - HMPREF1058_RS06405 0.10 +1.4 484,820 - HMPREF1058_RS06405 0.10 +0.1 484,961 + HMPREF1058_RS06405 0.21 -0.6 485,059 + HMPREF1058_RS06405 0.28 +0.6 485,063 - HMPREF1058_RS06405 0.28 +0.6 485,347 - +0.1 485,365 - HMPREF1058_RS06405 0.51 +1.5 485,450 - HMPREF1058_RS06405 0.57 +1.0 485,460 + HMPREF1058_RS06405 0.58 +5.4 485,460 + HMPREF1058_RS06405 0.58 +0.2 485,460 + HMPREF1058_RS06405 0.58 -0.7 485,460 + HMPREF1058_RS06405 0.58 -0.7 485,460 + HMPREF1058_RS06405 0.58 -1.6 485,461 - HMPREF1058_RS06405 0.58 -0.8 485,461 - HMPREF1058_RS06405 0.58 -0.3 485,464 + HMPREF1058_RS06405 0.58 -0.5 485,465 - HMPREF1058_RS06405 0.58 -0.3 485,465 - HMPREF1058_RS06405 0.58 -1.2 485,586 - HMPREF1058_RS06405 0.67 -0.6 485,633 - HMPREF1058_RS06405 0.71 +1.2 485,765 - HMPREF1058_RS06405 0.81 -0.0 485,786 + HMPREF1058_RS06405 0.82 -0.6 486,022 + +0.2 486,221 + +0.0 486,354 + HMPREF1058_RS06400 0.14 +0.6 486,355 - HMPREF1058_RS06400 0.14 -0.9 486,355 - HMPREF1058_RS06400 0.14 -0.5 486,413 + HMPREF1058_RS06400 0.17 +1.6 486,485 + HMPREF1058_RS06400 0.20 +0.1 486,499 - HMPREF1058_RS06400 0.21 +0.1 486,507 + HMPREF1058_RS06400 0.21 +1.1 486,508 - HMPREF1058_RS06400 0.21 +1.5 486,891 + HMPREF1058_RS06400 0.38 -0.3 486,892 - HMPREF1058_RS06400 0.38 -0.5 486,940 + HMPREF1058_RS06400 0.40 +0.6 486,941 - HMPREF1058_RS06400 0.40 -0.5 486,941 - HMPREF1058_RS06400 0.40 -0.5 486,941 - HMPREF1058_RS06400 0.40 -0.1 486,948 + HMPREF1058_RS06400 0.41 +2.6
Or see this region's nucleotide sequence