Experiment: Yacontrol (Yacon root syrup) 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS16960 and HMPREF1058_RS16955 are separated by 249 nucleotides HMPREF1058_RS16955 and HMPREF1058_RS16950 are separated by 70 nucleotides HMPREF1058_RS16950 and HMPREF1058_RS16945 are separated by 33 nucleotides HMPREF1058_RS16945 and HMPREF1058_RS16940 are separated by 44 nucleotides
HMPREF1058_RS16960: HMPREF1058_RS16960 - 30S ribosomal protein S1, at 550,909 to 552,705
_RS16960
HMPREF1058_RS16955: HMPREF1058_RS16955 - cold shock domain-containing protein, at 552,955 to 553,401
_RS16955
HMPREF1058_RS16950: HMPREF1058_RS16950 - ribonuclease Z, at 553,472 to 554,401
_RS16950
HMPREF1058_RS16945: HMPREF1058_RS16945 - RNA polymerase sigma factor, at 554,435 to 554,986
_RS16945
HMPREF1058_RS16940: HMPREF1058_RS16940 - hypothetical protein, at 555,031 to 555,408
_RS16940
Position (kb) 553
554
555 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 552.717 kb on + strand at 552.791 kb on - strand at 552.810 kb on + strand at 552.883 kb on + strand at 552.884 kb on - strand at 552.892 kb on - strand at 552.894 kb on + strand at 552.902 kb on + strand at 552.929 kb on + strand at 552.930 kb on - strand at 552.937 kb on + strand at 552.938 kb on - strand at 552.966 kb on + strand at 552.989 kb on + strand at 553.074 kb on + strand, within HMPREF1058_RS16955 at 553.088 kb on + strand, within HMPREF1058_RS16955 at 553.088 kb on + strand, within HMPREF1058_RS16955 at 553.089 kb on - strand, within HMPREF1058_RS16955 at 553.131 kb on + strand, within HMPREF1058_RS16955 at 553.132 kb on - strand, within HMPREF1058_RS16955 at 553.152 kb on + strand, within HMPREF1058_RS16955 at 553.182 kb on + strand, within HMPREF1058_RS16955 at 553.205 kb on + strand, within HMPREF1058_RS16955 at 553.223 kb on + strand, within HMPREF1058_RS16955 at 553.223 kb on + strand, within HMPREF1058_RS16955 at 553.224 kb on - strand, within HMPREF1058_RS16955 at 553.224 kb on - strand, within HMPREF1058_RS16955 at 553.286 kb on - strand, within HMPREF1058_RS16955 at 553.322 kb on + strand, within HMPREF1058_RS16955 at 553.385 kb on + strand at 553.411 kb on - strand at 553.488 kb on + strand at 553.489 kb on - strand at 553.489 kb on - strand at 553.492 kb on + strand at 553.493 kb on - strand at 553.493 kb on - strand at 553.497 kb on + strand at 553.497 kb on + strand at 553.497 kb on + strand at 553.498 kb on - strand at 553.556 kb on - strand at 553.645 kb on + strand, within HMPREF1058_RS16950 at 553.647 kb on + strand, within HMPREF1058_RS16950 at 553.647 kb on + strand, within HMPREF1058_RS16950 at 553.648 kb on - strand, within HMPREF1058_RS16950 at 553.736 kb on + strand, within HMPREF1058_RS16950 at 553.736 kb on + strand, within HMPREF1058_RS16950 at 553.739 kb on - strand, within HMPREF1058_RS16950 at 553.758 kb on + strand, within HMPREF1058_RS16950 at 553.759 kb on - strand, within HMPREF1058_RS16950 at 553.772 kb on - strand, within HMPREF1058_RS16950 at 553.772 kb on - strand, within HMPREF1058_RS16950 at 553.801 kb on + strand, within HMPREF1058_RS16950 at 553.809 kb on - strand, within HMPREF1058_RS16950 at 553.851 kb on + strand, within HMPREF1058_RS16950 at 553.857 kb on - strand, within HMPREF1058_RS16950 at 553.857 kb on - strand, within HMPREF1058_RS16950 at 553.893 kb on + strand, within HMPREF1058_RS16950 at 553.951 kb on + strand, within HMPREF1058_RS16950 at 554.049 kb on + strand, within HMPREF1058_RS16950 at 554.099 kb on + strand, within HMPREF1058_RS16950 at 554.099 kb on + strand, within HMPREF1058_RS16950 at 554.111 kb on - strand, within HMPREF1058_RS16950 at 554.111 kb on - strand, within HMPREF1058_RS16950 at 554.113 kb on + strand, within HMPREF1058_RS16950 at 554.114 kb on - strand, within HMPREF1058_RS16950 at 554.118 kb on - strand, within HMPREF1058_RS16950 at 554.142 kb on + strand, within HMPREF1058_RS16950 at 554.145 kb on - strand, within HMPREF1058_RS16950 at 554.262 kb on + strand, within HMPREF1058_RS16950 at 554.319 kb on + strand at 554.352 kb on + strand at 554.400 kb on - strand at 554.404 kb on + strand at 554.417 kb on + strand at 554.418 kb on - strand at 554.445 kb on - strand at 554.461 kb on - strand at 554.535 kb on + strand, within HMPREF1058_RS16945 at 554.535 kb on + strand, within HMPREF1058_RS16945 at 554.535 kb on + strand, within HMPREF1058_RS16945 at 554.548 kb on - strand, within HMPREF1058_RS16945 at 554.548 kb on - strand, within HMPREF1058_RS16945 at 554.623 kb on - strand, within HMPREF1058_RS16945 at 554.670 kb on + strand, within HMPREF1058_RS16945 at 554.777 kb on + strand, within HMPREF1058_RS16945 at 554.777 kb on + strand, within HMPREF1058_RS16945 at 554.845 kb on + strand, within HMPREF1058_RS16945 at 554.846 kb on - strand, within HMPREF1058_RS16945 at 554.847 kb on + strand, within HMPREF1058_RS16945 at 554.848 kb on - strand, within HMPREF1058_RS16945 at 554.865 kb on - strand, within HMPREF1058_RS16945 at 554.883 kb on - strand, within HMPREF1058_RS16945 at 554.914 kb on + strand, within HMPREF1058_RS16945 at 555.129 kb on + strand, within HMPREF1058_RS16940 at 555.130 kb on - strand, within HMPREF1058_RS16940 at 555.173 kb on + strand, within HMPREF1058_RS16940 at 555.178 kb on - strand, within HMPREF1058_RS16940 at 555.190 kb on - strand, within HMPREF1058_RS16940 at 555.205 kb on + strand, within HMPREF1058_RS16940 at 555.205 kb on + strand, within HMPREF1058_RS16940 at 555.205 kb on + strand, within HMPREF1058_RS16940 at 555.206 kb on - strand, within HMPREF1058_RS16940 at 555.206 kb on - strand, within HMPREF1058_RS16940 at 555.207 kb on + strand, within HMPREF1058_RS16940 at 555.207 kb on + strand, within HMPREF1058_RS16940 at 555.207 kb on + strand, within HMPREF1058_RS16940 at 555.208 kb on - strand, within HMPREF1058_RS16940 at 555.208 kb on - strand, within HMPREF1058_RS16940 at 555.208 kb on - strand, within HMPREF1058_RS16940 at 555.216 kb on + strand, within HMPREF1058_RS16940 at 555.254 kb on + strand, within HMPREF1058_RS16940 at 555.254 kb on + strand, within HMPREF1058_RS16940 at 555.254 kb on + strand, within HMPREF1058_RS16940 at 555.255 kb on - strand, within HMPREF1058_RS16940 at 555.255 kb on - strand, within HMPREF1058_RS16940 at 555.255 kb on - strand at 555.319 kb on + strand, within HMPREF1058_RS16940 at 555.320 kb on - strand, within HMPREF1058_RS16940 at 555.321 kb on + strand, within HMPREF1058_RS16940 at 555.360 kb on + strand, within HMPREF1058_RS16940 at 555.396 kb on + strand at 555.401 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Yacontrol (Yacon root syrup) 10 mg/mL (C) remove 552,717 + -0.5 552,791 - +0.4 552,810 + +0.3 552,883 + -1.1 552,884 - -0.2 552,892 - -0.2 552,894 + +0.3 552,902 + +0.2 552,929 + +0.4 552,930 - +0.4 552,937 + +1.0 552,938 - -0.2 552,966 + +0.8 552,989 + -1.8 553,074 + HMPREF1058_RS16955 0.27 +0.3 553,088 + HMPREF1058_RS16955 0.30 -0.4 553,088 + HMPREF1058_RS16955 0.30 +2.4 553,089 - HMPREF1058_RS16955 0.30 -0.5 553,131 + HMPREF1058_RS16955 0.39 -0.7 553,132 - HMPREF1058_RS16955 0.40 -0.6 553,152 + HMPREF1058_RS16955 0.44 -0.1 553,182 + HMPREF1058_RS16955 0.51 +2.4 553,205 + HMPREF1058_RS16955 0.56 -0.4 553,223 + HMPREF1058_RS16955 0.60 -1.0 553,223 + HMPREF1058_RS16955 0.60 -0.4 553,224 - HMPREF1058_RS16955 0.60 -0.8 553,224 - HMPREF1058_RS16955 0.60 -0.3 553,286 - HMPREF1058_RS16955 0.74 -0.8 553,322 + HMPREF1058_RS16955 0.82 -0.4 553,385 + -0.6 553,411 - -1.0 553,488 + +0.1 553,489 - -0.7 553,489 - -0.6 553,492 + -3.2 553,493 - +0.0 553,493 - -0.3 553,497 + -1.6 553,497 + -0.5 553,497 + -1.7 553,498 - -0.4 553,556 - -2.6 553,645 + HMPREF1058_RS16950 0.19 -0.4 553,647 + HMPREF1058_RS16950 0.19 -1.2 553,647 + HMPREF1058_RS16950 0.19 -0.5 553,648 - HMPREF1058_RS16950 0.19 -0.9 553,736 + HMPREF1058_RS16950 0.28 -1.4 553,736 + HMPREF1058_RS16950 0.28 -0.0 553,739 - HMPREF1058_RS16950 0.29 -0.7 553,758 + HMPREF1058_RS16950 0.31 +0.4 553,759 - HMPREF1058_RS16950 0.31 -1.3 553,772 - HMPREF1058_RS16950 0.32 -0.6 553,772 - HMPREF1058_RS16950 0.32 -2.0 553,801 + HMPREF1058_RS16950 0.35 -1.9 553,809 - HMPREF1058_RS16950 0.36 +0.0 553,851 + HMPREF1058_RS16950 0.41 -1.1 553,857 - HMPREF1058_RS16950 0.41 -2.3 553,857 - HMPREF1058_RS16950 0.41 -1.1 553,893 + HMPREF1058_RS16950 0.45 +2.4 553,951 + HMPREF1058_RS16950 0.52 -0.7 554,049 + HMPREF1058_RS16950 0.62 -0.9 554,099 + HMPREF1058_RS16950 0.67 -0.6 554,099 + HMPREF1058_RS16950 0.67 -2.6 554,111 - HMPREF1058_RS16950 0.69 -1.5 554,111 - HMPREF1058_RS16950 0.69 +0.5 554,113 + HMPREF1058_RS16950 0.69 -2.3 554,114 - HMPREF1058_RS16950 0.69 +0.5 554,118 - HMPREF1058_RS16950 0.69 +1.4 554,142 + HMPREF1058_RS16950 0.72 -1.4 554,145 - HMPREF1058_RS16950 0.72 -0.4 554,262 + HMPREF1058_RS16950 0.85 -0.8 554,319 + -0.8 554,352 + -1.1 554,400 - -0.3 554,404 + -1.2 554,417 + -0.8 554,418 - -1.4 554,445 - +0.4 554,461 - +1.0 554,535 + HMPREF1058_RS16945 0.18 -0.5 554,535 + HMPREF1058_RS16945 0.18 +0.1 554,535 + HMPREF1058_RS16945 0.18 -0.3 554,548 - HMPREF1058_RS16945 0.20 -0.6 554,548 - HMPREF1058_RS16945 0.20 +1.3 554,623 - HMPREF1058_RS16945 0.34 -1.3 554,670 + HMPREF1058_RS16945 0.43 -2.7 554,777 + HMPREF1058_RS16945 0.62 -0.9 554,777 + HMPREF1058_RS16945 0.62 -1.0 554,845 + HMPREF1058_RS16945 0.74 -0.7 554,846 - HMPREF1058_RS16945 0.74 +1.8 554,847 + HMPREF1058_RS16945 0.75 +0.2 554,848 - HMPREF1058_RS16945 0.75 -1.9 554,865 - HMPREF1058_RS16945 0.78 +0.2 554,883 - HMPREF1058_RS16945 0.81 -1.1 554,914 + HMPREF1058_RS16945 0.87 +0.0 555,129 + HMPREF1058_RS16940 0.26 -0.7 555,130 - HMPREF1058_RS16940 0.26 +0.2 555,173 + HMPREF1058_RS16940 0.38 -2.4 555,178 - HMPREF1058_RS16940 0.39 +0.0 555,190 - HMPREF1058_RS16940 0.42 +0.0 555,205 + HMPREF1058_RS16940 0.46 -0.4 555,205 + HMPREF1058_RS16940 0.46 -0.6 555,205 + HMPREF1058_RS16940 0.46 +2.1 555,206 - HMPREF1058_RS16940 0.46 +1.7 555,206 - HMPREF1058_RS16940 0.46 +0.2 555,207 + HMPREF1058_RS16940 0.47 -1.4 555,207 + HMPREF1058_RS16940 0.47 +0.4 555,207 + HMPREF1058_RS16940 0.47 -1.6 555,208 - HMPREF1058_RS16940 0.47 -0.6 555,208 - HMPREF1058_RS16940 0.47 +1.0 555,208 - HMPREF1058_RS16940 0.47 +1.9 555,216 + HMPREF1058_RS16940 0.49 -1.2 555,254 + HMPREF1058_RS16940 0.59 +0.1 555,254 + HMPREF1058_RS16940 0.59 -1.1 555,254 + HMPREF1058_RS16940 0.59 -0.1 555,255 - HMPREF1058_RS16940 0.59 -0.5 555,255 - HMPREF1058_RS16940 0.59 -1.1 555,255 - +0.6 555,319 + HMPREF1058_RS16940 0.76 -1.3 555,320 - HMPREF1058_RS16940 0.76 -1.3 555,321 + HMPREF1058_RS16940 0.77 -1.5 555,360 + HMPREF1058_RS16940 0.87 +0.6 555,396 + +0.1 555,401 - -0.2
Or see this region's nucleotide sequence