Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS02855

Experiment: Yacontrol (Yacon root syrup) 10 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Yacontrol (Yacon root syrup) 10 mg/mL (C)
69,351	+				-0.5
69,363	-				+0.8
69,384	+				-2.3
69,387	+				-0.2
69,388	-				+1.2
69,388	-				-0.3
69,421	+				-1.8
69,421	+				-0.3
69,421	+				+0.3
69,456	+		HMPREF1058_RS02860	0.13	-0.4
69,457	-		HMPREF1058_RS02860	0.13	-0.5
69,477	-		HMPREF1058_RS02860	0.17	+1.9
69,492	-		HMPREF1058_RS02860	0.20	-1.4
69,616	-		HMPREF1058_RS02860	0.44	+1.3
69,617	+		HMPREF1058_RS02860	0.44	+0.5
69,622	-		HMPREF1058_RS02860	0.45	+0.1
69,631	-		HMPREF1058_RS02860	0.47	-0.3
69,646	+		HMPREF1058_RS02860	0.50	-0.7
69,648	+		HMPREF1058_RS02860	0.50	+0.5
69,649	-		HMPREF1058_RS02860	0.51	+0.6
69,655	+		HMPREF1058_RS02860	0.52	-0.5
69,739	+		HMPREF1058_RS02860	0.68	+0.7
69,739	+		HMPREF1058_RS02860	0.68	-0.0
69,742	-		HMPREF1058_RS02860	0.69	+0.3
69,744	-		HMPREF1058_RS02860	0.69	+0.8
69,754	+		HMPREF1058_RS02860	0.71	-0.3
69,784	+		HMPREF1058_RS02860	0.77	+1.3
69,784	+		HMPREF1058_RS02860	0.77	-0.0
69,784	+		HMPREF1058_RS02860	0.77	+0.6
69,784	+		HMPREF1058_RS02860	0.77	-0.6
69,796	+		HMPREF1058_RS02860	0.79	-0.5
70,129	-				-0.0
70,178	+				+1.8
70,182	+				-1.1
70,222	+				+0.2
70,222	+				+0.1
70,269	-				+0.1
70,292	+				+0.7
70,337	+				-0.4
70,352	+				-0.3
70,391	+				-0.6
70,391	+				-0.9
70,392	-				+1.6
70,392	-				-0.5
70,432	+				-0.8
70,432	+				-0.8
70,435	+				-0.4
70,507	+		HMPREF1058_RS02855	0.14	-0.9
70,507	+		HMPREF1058_RS02855	0.14	-1.2
70,555	+		HMPREF1058_RS02855	0.17	-0.1
70,580	+		HMPREF1058_RS02855	0.19	-0.7
70,582	+		HMPREF1058_RS02855	0.19	-0.6
70,588	+		HMPREF1058_RS02855	0.20	-1.4
70,620	-		HMPREF1058_RS02855	0.22	+1.1
70,816	+		HMPREF1058_RS02855	0.37	-0.8
70,817	-		HMPREF1058_RS02855	0.37	-0.5
70,897	+		HMPREF1058_RS02855	0.44	-1.6
70,961	+		HMPREF1058_RS02855	0.48	-0.3
70,962	-		HMPREF1058_RS02855	0.49	-0.2
70,990	-		HMPREF1058_RS02855	0.51	+0.1
71,050	+		HMPREF1058_RS02855	0.55	-0.8
71,138	+		HMPREF1058_RS02855	0.62	-1.0
71,225	+		HMPREF1058_RS02855	0.69	+0.0
71,225	+		HMPREF1058_RS02855	0.69	-1.0
71,225	+		HMPREF1058_RS02855	0.69	-0.5
71,275	-				-1.6
71,301	+		HMPREF1058_RS02855	0.74	+0.3
71,347	+		HMPREF1058_RS02855	0.78	+0.2
71,387	-		HMPREF1058_RS02855	0.81	-0.5
71,407	+		HMPREF1058_RS02855	0.83	-0.4
71,521	-				+0.0
71,665	-				-0.2
71,669	+				-0.0
71,671	+				-1.1
71,671	+				+0.4
71,672	-				+0.6
71,683	+				-0.7
71,707	+				+0.9
71,767	-				-1.3
71,839	-				+0.3
71,850	-				-2.6
71,863	-				+0.0
71,866	-				-1.2
71,867	+				+0.1
71,874	-				-0.2
71,877	+				-0.8
72,008	+				+0.3
72,142	+		HMPREF1058_RS0119985	0.18	-0.1
72,143	-		HMPREF1058_RS0119985	0.18	+0.1
72,148	+		HMPREF1058_RS0119985	0.20	+0.3
72,176	-		HMPREF1058_RS0119985	0.28	-0.4
72,232	+				-1.1
72,358	-		HMPREF1058_RS0119985	0.82	-0.3
72,369	-		HMPREF1058_RS0119985	0.85	+0.2
72,377	+		HMPREF1058_RS0119985	0.88	+0.1
72,409	-				+1.3
72,409	-				+0.1
72,413	+				-0.1
72,482	+				-0.4
72,517	-				-0.1
72,620	-				+0.1
72,620	-				+0.3