Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS07060

Experiment: Bioecolians 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS07065 and HMPREF1058_RS07060 are separated by 43 nucleotidesHMPREF1058_RS07060 and HMPREF1058_RS07055 are separated by 10 nucleotides HMPREF1058_RS07065: HMPREF1058_RS07065 - OmpA family protein, at 324,290 to 325,384 _RS07065 HMPREF1058_RS07060: HMPREF1058_RS07060 - DUF3869 domain-containing protein, at 325,428 to 326,276 _RS07060 HMPREF1058_RS07055: HMPREF1058_RS07055 - hypothetical protein, at 326,287 to 327,525 _RS07055 Position (kb) 325 326 327Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 324.495 kb on + strand, within HMPREF1058_RS07065at 324.540 kb on - strand, within HMPREF1058_RS07065at 324.544 kb on + strand, within HMPREF1058_RS07065at 324.550 kb on + strand, within HMPREF1058_RS07065at 324.551 kb on - strand, within HMPREF1058_RS07065at 324.592 kb on + strand, within HMPREF1058_RS07065at 324.639 kb on - strand, within HMPREF1058_RS07065at 324.687 kb on - strand, within HMPREF1058_RS07065at 324.732 kb on + strand, within HMPREF1058_RS07065at 324.732 kb on + strand, within HMPREF1058_RS07065at 324.737 kb on + strand, within HMPREF1058_RS07065at 324.738 kb on - strand, within HMPREF1058_RS07065at 324.761 kb on - strand, within HMPREF1058_RS07065at 324.844 kb on + strand, within HMPREF1058_RS07065at 324.845 kb on - strand, within HMPREF1058_RS07065at 324.845 kb on - strand, within HMPREF1058_RS07065at 324.890 kb on - strand, within HMPREF1058_RS07065at 324.919 kb on + strand, within HMPREF1058_RS07065at 324.919 kb on + strand, within HMPREF1058_RS07065at 324.954 kb on + strand, within HMPREF1058_RS07065at 324.955 kb on - strand, within HMPREF1058_RS07065at 324.955 kb on - strand, within HMPREF1058_RS07065at 324.958 kb on + strand, within HMPREF1058_RS07065at 325.001 kb on + strand, within HMPREF1058_RS07065at 325.064 kb on + strand, within HMPREF1058_RS07065at 325.064 kb on + strand, within HMPREF1058_RS07065at 325.092 kb on + strand, within HMPREF1058_RS07065at 325.093 kb on - strand, within HMPREF1058_RS07065at 325.128 kb on - strand, within HMPREF1058_RS07065at 325.133 kb on + strand, within HMPREF1058_RS07065at 325.145 kb on + strand, within HMPREF1058_RS07065at 325.186 kb on + strand, within HMPREF1058_RS07065at 325.253 kb on + strand, within HMPREF1058_RS07065at 325.253 kb on + strand, within HMPREF1058_RS07065at 325.266 kb on - strand, within HMPREF1058_RS07065at 325.301 kb on - strandat 325.301 kb on - strandat 325.341 kb on - strandat 325.405 kb on + strandat 325.442 kb on + strandat 325.443 kb on - strandat 325.542 kb on - strand, within HMPREF1058_RS07060at 325.547 kb on + strand, within HMPREF1058_RS07060at 325.639 kb on + strand, within HMPREF1058_RS07060at 325.656 kb on - strand, within HMPREF1058_RS07060at 325.681 kb on - strand, within HMPREF1058_RS07060at 325.681 kb on - strand, within HMPREF1058_RS07060at 325.689 kb on + strand, within HMPREF1058_RS07060at 325.734 kb on - strand, within HMPREF1058_RS07060at 325.777 kb on - strand, within HMPREF1058_RS07060at 325.804 kb on + strand, within HMPREF1058_RS07060at 325.819 kb on + strand, within HMPREF1058_RS07060at 325.820 kb on - strand, within HMPREF1058_RS07060at 325.863 kb on - strand, within HMPREF1058_RS07060at 325.873 kb on - strand, within HMPREF1058_RS07060at 325.926 kb on - strand, within HMPREF1058_RS07060at 325.928 kb on + strand, within HMPREF1058_RS07060at 325.974 kb on - strand, within HMPREF1058_RS07060at 326.003 kb on - strand, within HMPREF1058_RS07060at 326.014 kb on - strand, within HMPREF1058_RS07060at 326.016 kb on - strand, within HMPREF1058_RS07060at 326.034 kb on + strand, within HMPREF1058_RS07060at 326.035 kb on - strand, within HMPREF1058_RS07060at 326.098 kb on - strand, within HMPREF1058_RS07060at 326.221 kb on - strandat 326.223 kb on + strandat 326.240 kb on + strandat 326.334 kb on + strandat 326.335 kb on - strandat 326.368 kb on - strandat 326.369 kb on + strandat 326.370 kb on - strandat 326.382 kb on - strandat 326.406 kb on - strandat 326.445 kb on + strand, within HMPREF1058_RS07055at 326.448 kb on - strand, within HMPREF1058_RS07055at 326.448 kb on - strand, within HMPREF1058_RS07055at 326.448 kb on - strand, within HMPREF1058_RS07055at 326.452 kb on - strand, within HMPREF1058_RS07055at 326.452 kb on - strand, within HMPREF1058_RS07055at 326.452 kb on - strand, within HMPREF1058_RS07055at 326.452 kb on - strand, within HMPREF1058_RS07055at 326.506 kb on - strand, within HMPREF1058_RS07055at 326.567 kb on - strand, within HMPREF1058_RS07055at 326.599 kb on + strand, within HMPREF1058_RS07055at 326.599 kb on + strand, within HMPREF1058_RS07055at 326.603 kb on + strand, within HMPREF1058_RS07055at 326.604 kb on - strand, within HMPREF1058_RS07055at 326.694 kb on - strandat 326.722 kb on + strand, within HMPREF1058_RS07055at 326.723 kb on - strandat 326.723 kb on - strand, within HMPREF1058_RS07055at 326.723 kb on - strand, within HMPREF1058_RS07055at 326.723 kb on - strand, within HMPREF1058_RS07055at 326.728 kb on + strand, within HMPREF1058_RS07055at 326.728 kb on + strand, within HMPREF1058_RS07055at 326.728 kb on + strand, within HMPREF1058_RS07055at 326.729 kb on - strand, within HMPREF1058_RS07055at 326.739 kb on + strand, within HMPREF1058_RS07055at 326.749 kb on + strand, within HMPREF1058_RS07055at 326.750 kb on - strand, within HMPREF1058_RS07055at 326.752 kb on - strand, within HMPREF1058_RS07055at 326.789 kb on - strand, within HMPREF1058_RS07055at 326.824 kb on + strand, within HMPREF1058_RS07055at 326.825 kb on - strand, within HMPREF1058_RS07055at 326.826 kb on + strand, within HMPREF1058_RS07055at 326.841 kb on - strand, within HMPREF1058_RS07055at 326.844 kb on + strand, within HMPREF1058_RS07055at 326.845 kb on - strand, within HMPREF1058_RS07055at 326.847 kb on + strand, within HMPREF1058_RS07055at 326.847 kb on + strand, within HMPREF1058_RS07055at 326.847 kb on + strand, within HMPREF1058_RS07055at 326.850 kb on - strand, within HMPREF1058_RS07055at 326.878 kb on + strand, within HMPREF1058_RS07055at 326.881 kb on - strand, within HMPREF1058_RS07055at 326.881 kb on - strand, within HMPREF1058_RS07055at 326.881 kb on - strand, within HMPREF1058_RS07055at 326.881 kb on - strand, within HMPREF1058_RS07055at 326.928 kb on - strand, within HMPREF1058_RS07055at 326.975 kb on + strand, within HMPREF1058_RS07055at 327.004 kb on + strand, within HMPREF1058_RS07055at 327.005 kb on - strand, within HMPREF1058_RS07055at 327.016 kb on + strand, within HMPREF1058_RS07055at 327.039 kb on + strand, within HMPREF1058_RS07055at 327.039 kb on + strand, within HMPREF1058_RS07055at 327.041 kb on + strand, within HMPREF1058_RS07055at 327.046 kb on + strand, within HMPREF1058_RS07055at 327.058 kb on + strand, within HMPREF1058_RS07055at 327.066 kb on + strand, within HMPREF1058_RS07055at 327.066 kb on + strand, within HMPREF1058_RS07055at 327.216 kb on + strand, within HMPREF1058_RS07055at 327.217 kb on - strand, within HMPREF1058_RS07055at 327.220 kb on - strand, within HMPREF1058_RS07055at 327.220 kb on - strand, within HMPREF1058_RS07055at 327.220 kb on - strand, within HMPREF1058_RS07055at 327.221 kb on + strand, within HMPREF1058_RS07055at 327.222 kb on - strand, within HMPREF1058_RS07055at 327.222 kb on - strand, within HMPREF1058_RS07055at 327.274 kb on + strand, within HMPREF1058_RS07055

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Per-strain Table

Position Strand Gene LocusTag Fraction Bioecolians 10 mg/mL (C)
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324,495 + HMPREF1058_RS07065 0.19 -0.8
324,540 - HMPREF1058_RS07065 0.23 +1.4
324,544 + HMPREF1058_RS07065 0.23 -1.9
324,550 + HMPREF1058_RS07065 0.24 +0.0
324,551 - HMPREF1058_RS07065 0.24 -3.2
324,592 + HMPREF1058_RS07065 0.28 -2.4
324,639 - HMPREF1058_RS07065 0.32 -1.0
324,687 - HMPREF1058_RS07065 0.36 -4.3
324,732 + HMPREF1058_RS07065 0.40 -2.8
324,732 + HMPREF1058_RS07065 0.40 -1.3
324,737 + HMPREF1058_RS07065 0.41 +1.2
324,738 - HMPREF1058_RS07065 0.41 +0.4
324,761 - HMPREF1058_RS07065 0.43 -2.7
324,844 + HMPREF1058_RS07065 0.51 -1.5
324,845 - HMPREF1058_RS07065 0.51 -1.6
324,845 - HMPREF1058_RS07065 0.51 -0.6
324,890 - HMPREF1058_RS07065 0.55 -1.0
324,919 + HMPREF1058_RS07065 0.57 +0.4
324,919 + HMPREF1058_RS07065 0.57 +0.0
324,954 + HMPREF1058_RS07065 0.61 -2.9
324,955 - HMPREF1058_RS07065 0.61 -0.5
324,955 - HMPREF1058_RS07065 0.61 -1.5
324,958 + HMPREF1058_RS07065 0.61 +0.1
325,001 + HMPREF1058_RS07065 0.65 -1.4
325,064 + HMPREF1058_RS07065 0.71 -0.6
325,064 + HMPREF1058_RS07065 0.71 -1.2
325,092 + HMPREF1058_RS07065 0.73 -0.5
325,093 - HMPREF1058_RS07065 0.73 -2.2
325,128 - HMPREF1058_RS07065 0.77 -0.2
325,133 + HMPREF1058_RS07065 0.77 +1.0
325,145 + HMPREF1058_RS07065 0.78 -1.6
325,186 + HMPREF1058_RS07065 0.82 -1.0
325,253 + HMPREF1058_RS07065 0.88 -1.3
325,253 + HMPREF1058_RS07065 0.88 -1.4
325,266 - HMPREF1058_RS07065 0.89 -1.9
325,301 - -1.3
325,301 - -3.1
325,341 - -0.9
325,405 + -2.3
325,442 + -0.8
325,443 - +0.0
325,542 - HMPREF1058_RS07060 0.13 -0.0
325,547 + HMPREF1058_RS07060 0.14 -2.1
325,639 + HMPREF1058_RS07060 0.25 -0.9
325,656 - HMPREF1058_RS07060 0.27 -1.8
325,681 - HMPREF1058_RS07060 0.30 -2.0
325,681 - HMPREF1058_RS07060 0.30 -0.5
325,689 + HMPREF1058_RS07060 0.31 -2.4
325,734 - HMPREF1058_RS07060 0.36 +0.2
325,777 - HMPREF1058_RS07060 0.41 +0.5
325,804 + HMPREF1058_RS07060 0.44 -2.6
325,819 + HMPREF1058_RS07060 0.46 -0.3
325,820 - HMPREF1058_RS07060 0.46 -0.9
325,863 - HMPREF1058_RS07060 0.51 -0.3
325,873 - HMPREF1058_RS07060 0.52 -0.6
325,926 - HMPREF1058_RS07060 0.59 -0.0
325,928 + HMPREF1058_RS07060 0.59 +0.3
325,974 - HMPREF1058_RS07060 0.64 -3.7
326,003 - HMPREF1058_RS07060 0.68 -0.8
326,014 - HMPREF1058_RS07060 0.69 -1.9
326,016 - HMPREF1058_RS07060 0.69 -1.3
326,034 + HMPREF1058_RS07060 0.71 -1.2
326,035 - HMPREF1058_RS07060 0.71 +0.5
326,098 - HMPREF1058_RS07060 0.79 -2.3
326,221 - -3.3
326,223 + -2.1
326,240 + -0.3
326,334 + -0.5
326,335 - -1.6
326,368 - +0.4
326,369 + -1.2
326,370 - -3.3
326,382 - -0.6
326,406 - -0.5
326,445 + HMPREF1058_RS07055 0.13 -1.2
326,448 - HMPREF1058_RS07055 0.13 +0.1
326,448 - HMPREF1058_RS07055 0.13 -0.7
326,448 - HMPREF1058_RS07055 0.13 -1.6
326,452 - HMPREF1058_RS07055 0.13 -1.4
326,452 - HMPREF1058_RS07055 0.13 -0.4
326,452 - HMPREF1058_RS07055 0.13 +2.8
326,452 - HMPREF1058_RS07055 0.13 -1.4
326,506 - HMPREF1058_RS07055 0.18 +0.4
326,567 - HMPREF1058_RS07055 0.23 -1.3
326,599 + HMPREF1058_RS07055 0.25 -1.3
326,599 + HMPREF1058_RS07055 0.25 -1.0
326,603 + HMPREF1058_RS07055 0.26 -1.6
326,604 - HMPREF1058_RS07055 0.26 -1.9
326,694 - +0.5
326,722 + HMPREF1058_RS07055 0.35 +2.0
326,723 - -0.0
326,723 - HMPREF1058_RS07055 0.35 -2.4
326,723 - HMPREF1058_RS07055 0.35 -1.6
326,723 - HMPREF1058_RS07055 0.35 -2.2
326,728 + HMPREF1058_RS07055 0.36 -0.2
326,728 + HMPREF1058_RS07055 0.36 +0.2
326,728 + HMPREF1058_RS07055 0.36 -1.3
326,729 - HMPREF1058_RS07055 0.36 -1.0
326,739 + HMPREF1058_RS07055 0.36 -2.0
326,749 + HMPREF1058_RS07055 0.37 -1.6
326,750 - HMPREF1058_RS07055 0.37 +0.2
326,752 - HMPREF1058_RS07055 0.38 -0.9
326,789 - HMPREF1058_RS07055 0.41 +0.4
326,824 + HMPREF1058_RS07055 0.43 -2.2
326,825 - HMPREF1058_RS07055 0.43 -0.4
326,826 + HMPREF1058_RS07055 0.44 -1.5
326,841 - HMPREF1058_RS07055 0.45 -0.5
326,844 + HMPREF1058_RS07055 0.45 -0.9
326,845 - HMPREF1058_RS07055 0.45 -1.8
326,847 + HMPREF1058_RS07055 0.45 -0.0
326,847 + HMPREF1058_RS07055 0.45 +0.4
326,847 + HMPREF1058_RS07055 0.45 -0.9
326,850 - HMPREF1058_RS07055 0.45 +1.1
326,878 + HMPREF1058_RS07055 0.48 -1.2
326,881 - HMPREF1058_RS07055 0.48 +0.2
326,881 - HMPREF1058_RS07055 0.48 -2.2
326,881 - HMPREF1058_RS07055 0.48 -0.3
326,881 - HMPREF1058_RS07055 0.48 -2.1
326,928 - HMPREF1058_RS07055 0.52 -2.9
326,975 + HMPREF1058_RS07055 0.56 -0.5
327,004 + HMPREF1058_RS07055 0.58 -0.3
327,005 - HMPREF1058_RS07055 0.58 -0.6
327,016 + HMPREF1058_RS07055 0.59 -2.5
327,039 + HMPREF1058_RS07055 0.61 -2.1
327,039 + HMPREF1058_RS07055 0.61 -2.2
327,041 + HMPREF1058_RS07055 0.61 +0.5
327,046 + HMPREF1058_RS07055 0.61 -3.0
327,058 + HMPREF1058_RS07055 0.62 -1.0
327,066 + HMPREF1058_RS07055 0.63 -0.9
327,066 + HMPREF1058_RS07055 0.63 -2.0
327,216 + HMPREF1058_RS07055 0.75 -0.9
327,217 - HMPREF1058_RS07055 0.75 -1.5
327,220 - HMPREF1058_RS07055 0.75 -0.7
327,220 - HMPREF1058_RS07055 0.75 -2.8
327,220 - HMPREF1058_RS07055 0.75 -3.2
327,221 + HMPREF1058_RS07055 0.75 -2.6
327,222 - HMPREF1058_RS07055 0.75 -0.5
327,222 - HMPREF1058_RS07055 0.75 +0.2
327,274 + HMPREF1058_RS07055 0.80 -0.9

Or see this region's nucleotide sequence