Experiment: D-Glucose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS07055 and HMPREF1058_RS07050 are separated by 206 nucleotides HMPREF1058_RS07050 and HMPREF1058_RS07045 are separated by 23 nucleotides HMPREF1058_RS07045 and HMPREF1058_RS07040 are separated by 72 nucleotides
HMPREF1058_RS07055: HMPREF1058_RS07055 - hypothetical protein, at 326,287 to 327,525
_RS07055
HMPREF1058_RS07050: HMPREF1058_RS07050 - Holliday junction resolvase RuvX, at 327,732 to 328,151
_RS07050
HMPREF1058_RS07045: HMPREF1058_RS07045 - peptide deformylase, at 328,175 to 328,729
_RS07045
HMPREF1058_RS07040: HMPREF1058_RS07040 - tetratricopeptide repeat protein, at 328,802 to 330,811
_RS07040
Position (kb) 327
328
329 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 326.739 kb on + strand, within HMPREF1058_RS07055 at 326.749 kb on + strand, within HMPREF1058_RS07055 at 326.750 kb on - strand, within HMPREF1058_RS07055 at 326.752 kb on - strand, within HMPREF1058_RS07055 at 326.789 kb on - strand, within HMPREF1058_RS07055 at 326.824 kb on + strand, within HMPREF1058_RS07055 at 326.825 kb on - strand, within HMPREF1058_RS07055 at 326.826 kb on + strand, within HMPREF1058_RS07055 at 326.841 kb on - strand, within HMPREF1058_RS07055 at 326.844 kb on + strand, within HMPREF1058_RS07055 at 326.845 kb on - strand, within HMPREF1058_RS07055 at 326.847 kb on + strand, within HMPREF1058_RS07055 at 326.847 kb on + strand, within HMPREF1058_RS07055 at 326.847 kb on + strand, within HMPREF1058_RS07055 at 326.850 kb on - strand, within HMPREF1058_RS07055 at 326.878 kb on + strand, within HMPREF1058_RS07055 at 326.881 kb on - strand, within HMPREF1058_RS07055 at 326.881 kb on - strand, within HMPREF1058_RS07055 at 326.881 kb on - strand, within HMPREF1058_RS07055 at 326.881 kb on - strand, within HMPREF1058_RS07055 at 326.928 kb on - strand, within HMPREF1058_RS07055 at 326.975 kb on + strand, within HMPREF1058_RS07055 at 327.004 kb on + strand, within HMPREF1058_RS07055 at 327.005 kb on - strand, within HMPREF1058_RS07055 at 327.016 kb on + strand, within HMPREF1058_RS07055 at 327.039 kb on + strand, within HMPREF1058_RS07055 at 327.039 kb on + strand, within HMPREF1058_RS07055 at 327.041 kb on + strand, within HMPREF1058_RS07055 at 327.046 kb on + strand, within HMPREF1058_RS07055 at 327.058 kb on + strand, within HMPREF1058_RS07055 at 327.066 kb on + strand, within HMPREF1058_RS07055 at 327.066 kb on + strand, within HMPREF1058_RS07055 at 327.216 kb on + strand, within HMPREF1058_RS07055 at 327.217 kb on - strand, within HMPREF1058_RS07055 at 327.220 kb on - strand, within HMPREF1058_RS07055 at 327.220 kb on - strand, within HMPREF1058_RS07055 at 327.220 kb on - strand, within HMPREF1058_RS07055 at 327.221 kb on + strand, within HMPREF1058_RS07055 at 327.222 kb on - strand, within HMPREF1058_RS07055 at 327.222 kb on - strand, within HMPREF1058_RS07055 at 327.274 kb on + strand, within HMPREF1058_RS07055 at 327.280 kb on - strand, within HMPREF1058_RS07055 at 327.280 kb on - strand, within HMPREF1058_RS07055 at 327.280 kb on - strand, within HMPREF1058_RS07055 at 327.283 kb on + strand, within HMPREF1058_RS07055 at 327.284 kb on - strand, within HMPREF1058_RS07055 at 327.339 kb on - strand, within HMPREF1058_RS07055 at 327.339 kb on - strand, within HMPREF1058_RS07055 at 327.409 kb on + strand at 327.466 kb on - strand at 327.466 kb on - strand at 327.469 kb on + strand at 327.471 kb on + strand at 327.472 kb on - strand at 327.472 kb on - strand at 327.528 kb on + strand at 327.570 kb on - strand at 327.686 kb on + strand at 327.689 kb on - strand at 327.698 kb on - strand at 327.731 kb on + strand at 328.143 kb on + strand at 328.749 kb on + strand at 328.750 kb on - strand at 328.750 kb on - strand at 328.793 kb on - strand at 328.793 kb on - strand at 328.820 kb on + strand at 328.821 kb on - strand at 328.823 kb on - strand at 328.823 kb on - strand at 328.827 kb on + strand at 328.827 kb on + strand at 328.828 kb on - strand at 328.830 kb on + strand at 328.863 kb on + strand at 328.904 kb on + strand at 328.905 kb on - strand at 328.916 kb on + strand at 328.917 kb on - strand at 328.917 kb on - strand at 328.964 kb on + strand at 328.985 kb on + strand at 329.050 kb on + strand, within HMPREF1058_RS07040 at 329.073 kb on + strand, within HMPREF1058_RS07040 at 329.116 kb on + strand, within HMPREF1058_RS07040 at 329.133 kb on + strand, within HMPREF1058_RS07040 at 329.143 kb on + strand, within HMPREF1058_RS07040 at 329.144 kb on - strand, within HMPREF1058_RS07040 at 329.144 kb on - strand, within HMPREF1058_RS07040
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose 10 mM (C) remove 326,739 + HMPREF1058_RS07055 0.36 -2.0 326,749 + HMPREF1058_RS07055 0.37 -3.2 326,750 - HMPREF1058_RS07055 0.37 -0.5 326,752 - HMPREF1058_RS07055 0.38 +0.1 326,789 - HMPREF1058_RS07055 0.41 -1.7 326,824 + HMPREF1058_RS07055 0.43 -0.2 326,825 - HMPREF1058_RS07055 0.43 -1.4 326,826 + HMPREF1058_RS07055 0.44 -2.6 326,841 - HMPREF1058_RS07055 0.45 +2.1 326,844 + HMPREF1058_RS07055 0.45 -1.0 326,845 - HMPREF1058_RS07055 0.45 +1.3 326,847 + HMPREF1058_RS07055 0.45 -0.1 326,847 + HMPREF1058_RS07055 0.45 -0.7 326,847 + HMPREF1058_RS07055 0.45 -1.0 326,850 - HMPREF1058_RS07055 0.45 -1.3 326,878 + HMPREF1058_RS07055 0.48 +0.4 326,881 - HMPREF1058_RS07055 0.48 -2.7 326,881 - HMPREF1058_RS07055 0.48 -1.3 326,881 - HMPREF1058_RS07055 0.48 -3.3 326,881 - HMPREF1058_RS07055 0.48 -0.4 326,928 - HMPREF1058_RS07055 0.52 -0.4 326,975 + HMPREF1058_RS07055 0.56 -0.5 327,004 + HMPREF1058_RS07055 0.58 -0.3 327,005 - HMPREF1058_RS07055 0.58 -0.7 327,016 + HMPREF1058_RS07055 0.59 -2.5 327,039 + HMPREF1058_RS07055 0.61 -2.2 327,039 + HMPREF1058_RS07055 0.61 -2.2 327,041 + HMPREF1058_RS07055 0.61 +0.5 327,046 + HMPREF1058_RS07055 0.61 -1.5 327,058 + HMPREF1058_RS07055 0.62 -2.1 327,066 + HMPREF1058_RS07055 0.63 -1.0 327,066 + HMPREF1058_RS07055 0.63 -0.5 327,216 + HMPREF1058_RS07055 0.75 -1.0 327,217 - HMPREF1058_RS07055 0.75 -2.5 327,220 - HMPREF1058_RS07055 0.75 +0.1 327,220 - HMPREF1058_RS07055 0.75 -0.9 327,220 - HMPREF1058_RS07055 0.75 -0.3 327,221 + HMPREF1058_RS07055 0.75 -2.6 327,222 - HMPREF1058_RS07055 0.75 -2.1 327,222 - HMPREF1058_RS07055 0.75 +0.2 327,274 + HMPREF1058_RS07055 0.80 -1.0 327,280 - HMPREF1058_RS07055 0.80 -1.7 327,280 - HMPREF1058_RS07055 0.80 -0.4 327,280 - HMPREF1058_RS07055 0.80 -0.7 327,283 + HMPREF1058_RS07055 0.80 -0.1 327,284 - HMPREF1058_RS07055 0.80 -0.8 327,339 - HMPREF1058_RS07055 0.85 +1.7 327,339 - HMPREF1058_RS07055 0.85 -0.1 327,409 + -2.3 327,466 - -0.7 327,466 - +0.0 327,469 + -1.8 327,471 + +0.4 327,472 - -0.5 327,472 - +0.0 327,528 + +0.8 327,570 - -1.0 327,686 + -1.3 327,689 - -3.1 327,698 - -1.1 327,731 + -0.7 328,143 + -1.0 328,749 + -0.0 328,750 - -4.2 328,750 - -1.5 328,793 - -4.5 328,793 - -2.9 328,820 + -4.7 328,821 - -4.6 328,823 - -6.0 328,823 - -4.9 328,827 + -4.4 328,827 + -2.3 328,828 - -3.4 328,830 + -3.7 328,863 + -4.9 328,904 + -1.4 328,905 - -4.8 328,916 + -3.8 328,917 - -3.7 328,917 - -4.8 328,964 + -3.0 328,985 + -1.7 329,050 + HMPREF1058_RS07040 0.12 -3.7 329,073 + HMPREF1058_RS07040 0.13 -2.6 329,116 + HMPREF1058_RS07040 0.16 -2.6 329,133 + HMPREF1058_RS07040 0.16 +0.5 329,143 + HMPREF1058_RS07040 0.17 -3.0 329,144 - HMPREF1058_RS07040 0.17 -3.4 329,144 - HMPREF1058_RS07040 0.17 -1.5
Or see this region's nucleotide sequence