Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS16350

Experiment: NLDM_defined low iron; midlog

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NLDM_defined low iron; midlog
3,596,589	+				+0.7
3,596,589	+				-0.1
3,596,589	+				-1.9
3,596,589	+				+0.1
3,596,589	+				+0.7
3,596,590	-				-0.4
3,596,590	-				+0.6
3,596,590	-				+1.2
3,596,590	-				-0.1
3,596,590	-				-0.2
3,596,616	+				+0.9
3,596,616	+				+1.8
3,596,616	+				-0.3
3,596,617	-				+1.0
3,596,714	+		LRK54_RS16345	0.17	+0.9
3,596,715	-		LRK54_RS16345	0.18	+0.4
3,596,715	-		LRK54_RS16345	0.18	-0.7
3,596,736	+		LRK54_RS16345	0.20	+1.0
3,596,736	+		LRK54_RS16345	0.20	+0.9
3,596,736	+		LRK54_RS16345	0.20	-0.6
3,596,736	+		LRK54_RS16345	0.20	+0.1
3,596,736	+		LRK54_RS16345	0.20	+0.9
3,596,736	+		LRK54_RS16345	0.20	+0.4
3,596,736	+		LRK54_RS16345	0.20	-0.3
3,596,737	-		LRK54_RS16345	0.21	-0.3
3,596,737	-		LRK54_RS16345	0.21	-1.4
3,596,737	-		LRK54_RS16345	0.21	+0.4
3,596,737	-		LRK54_RS16345	0.21	+0.6
3,596,737	-		LRK54_RS16345	0.21	-2.3
3,596,737	-		LRK54_RS16345	0.21	+1.4
3,596,737	-		LRK54_RS16345	0.21	+0.2
3,596,737	-		LRK54_RS16345	0.21	+0.4
3,596,737	-		LRK54_RS16345	0.21	+0.4
3,596,737	-		LRK54_RS16345	0.21	+1.0
3,596,881	+		LRK54_RS16345	0.40	+0.4
3,596,881	+		LRK54_RS16345	0.40	+1.1
3,596,881	+		LRK54_RS16345	0.40	-0.7
3,596,881	+		LRK54_RS16345	0.40	-0.2
3,596,881	+		LRK54_RS16345	0.40	-1.9
3,596,881	+		LRK54_RS16345	0.40	-0.6
3,596,882	-		LRK54_RS16345	0.40	+1.4
3,596,882	-		LRK54_RS16345	0.40	-0.3
3,596,882	-		LRK54_RS16345	0.40	+0.1
3,596,904	+		LRK54_RS16345	0.43	+0.6
3,596,904	+		LRK54_RS16345	0.43	+1.6
3,596,904	+		LRK54_RS16345	0.43	-0.6
3,596,904	+		LRK54_RS16345	0.43	+0.3
3,596,904	+		LRK54_RS16345	0.43	+0.9
3,596,904	+		LRK54_RS16345	0.43	-0.7
3,596,904	+		LRK54_RS16345	0.43	+0.9
3,596,904	+		LRK54_RS16345	0.43	-2.5
3,596,904	+		LRK54_RS16345	0.43	-0.1
3,596,904	+		LRK54_RS16345	0.43	-0.0
3,596,904	+		LRK54_RS16345	0.43	-2.1
3,596,904	+		LRK54_RS16345	0.43	-2.1
3,596,904	+		LRK54_RS16345	0.43	-1.5
3,596,904	+		LRK54_RS16345	0.43	+0.1
3,596,904	+		LRK54_RS16345	0.43	-1.1
3,596,904	+		LRK54_RS16345	0.43	+0.2
3,596,904	+		LRK54_RS16345	0.43	-0.2
3,596,904	+		LRK54_RS16345	0.43	-0.6
3,596,904	+		LRK54_RS16345	0.43	-0.3
3,596,905	-		LRK54_RS16345	0.43	+0.4
3,596,905	-		LRK54_RS16345	0.43	+0.7
3,596,905	-		LRK54_RS16345	0.43	-0.3
3,596,905	-		LRK54_RS16345	0.43	+0.4
3,596,905	-		LRK54_RS16345	0.43	+0.6
3,596,905	-		LRK54_RS16345	0.43	-2.0
3,596,905	-		LRK54_RS16345	0.43	-0.3
3,596,905	-		LRK54_RS16345	0.43	-0.2
3,596,905	-		LRK54_RS16345	0.43	+0.7
3,596,905	-		LRK54_RS16345	0.43	+1.2
3,596,905	-		LRK54_RS16345	0.43	+0.3
3,596,905	-		LRK54_RS16345	0.43	+0.4
3,596,905	-		LRK54_RS16345	0.43	-0.3
3,596,905	-		LRK54_RS16345	0.43	+0.0
3,596,905	-		LRK54_RS16345	0.43	+0.7
3,596,905	-		LRK54_RS16345	0.43	+0.2
3,596,905	-		LRK54_RS16345	0.43	+0.3
3,597,023	+		LRK54_RS16345	0.59	-0.9
3,597,023	+		LRK54_RS16345	0.59	-0.1
3,597,023	+		LRK54_RS16345	0.59	-0.7
3,597,023	+		LRK54_RS16345	0.59	+0.7
3,597,023	+		LRK54_RS16345	0.59	+0.1
3,597,023	+		LRK54_RS16345	0.59	+0.1
3,597,023	+		LRK54_RS16345	0.59	+0.3
3,597,024	-		LRK54_RS16345	0.59	+1.1
3,597,024	-		LRK54_RS16345	0.59	+1.4
3,597,024	-		LRK54_RS16345	0.59	+0.6
3,597,024	-		LRK54_RS16345	0.59	-0.2
3,597,024	-		LRK54_RS16345	0.59	-0.9
3,597,024	-		LRK54_RS16345	0.59	+0.4
3,597,024	-		LRK54_RS16345	0.59	+0.2
3,597,217	+		LRK54_RS16345	0.85	-0.2
3,597,217	+		LRK54_RS16345	0.85	+0.7
3,597,217	+		LRK54_RS16345	0.85	-0.0
3,597,217	+		LRK54_RS16345	0.85	-0.4
3,597,218	-		LRK54_RS16345	0.85	+0.0
3,597,218	-		LRK54_RS16345	0.85	-1.2
3,597,375	+				-0.5
3,597,375	+				+0.3
3,597,375	+				+1.4
3,597,375	+				+2.2
3,597,375	+				+0.5
3,597,375	+				-0.2
3,597,375	+				+0.0
3,597,375	+				+1.1
3,597,375	+				-0.1
3,597,376	-				-0.7
3,597,376	-				+0.7
3,597,405	+				-0.9
3,597,405	+				-0.8
3,597,405	+				+1.3
3,597,405	+				+0.1
3,597,405	+				-0.0
3,597,405	+				+0.4
3,597,405	+				-1.8
3,597,405	+				+1.2
3,597,405	+				-1.1
3,597,405	+				-1.6
3,597,405	+				+1.2
3,597,405	+				-0.5
3,597,406	-				-1.9
3,597,406	-				-0.6
3,597,406	-				-2.1
3,597,406	-				-0.9
3,597,406	-				-1.6
3,597,406	-				-0.7
3,597,406	-				+0.1
3,597,406	-				+0.3
3,597,406	-				-0.5
3,597,406	-				+1.8
3,597,406	-				+1.0
3,597,406	-				+0.1
3,597,406	-				+0.4
3,597,406	-				+0.1
3,597,406	-				-0.1
3,597,466	+				+0.5
3,597,466	+				+0.9
3,597,467	-				-1.6
3,597,467	-				+0.1
3,597,476	+				+1.9
3,597,476	+				+2.4
3,597,476	+				+0.3
3,597,476	+				+0.0
3,597,524	+				-1.0
3,597,524	+				+0.3
3,597,524	+				-1.2
3,597,524	+				+0.6
3,597,524	+				+0.3
3,597,524	+				+0.9
3,597,525	-				-1.6
3,597,525	-				+0.6
3,597,547	+				+1.8
3,597,547	+				+0.2
3,597,548	-				+2.0
3,597,679	+		LRK54_RS16350	0.26	-0.6
3,597,679	+		LRK54_RS16350	0.26	+0.2
3,597,680	-		LRK54_RS16350	0.26	-2.5
3,597,680	-		LRK54_RS16350	0.26	-1.5
3,597,680	-		LRK54_RS16350	0.26	+0.4
3,597,680	-		LRK54_RS16350	0.26	-0.8
3,597,834	+		LRK54_RS16350	0.69	-0.5
3,597,931	+				-0.1
3,597,931	+				-0.1
3,597,931	+				+0.9
3,597,931	+				-0.5
3,597,932	-				+0.1
3,597,932	-				-1.2
3,597,932	-				+0.6
3,597,932	-				-1.4
3,598,043	+				+0.9
3,598,068	+				-1.4
3,598,139	+				-1.2
3,598,139	+				+0.9
3,598,139	+				-0.7
3,598,140	-				-1.4
3,598,248	+				+1.2
3,598,248	+				+0.7
3,598,248	+				+0.7
3,598,249	-				-0.9
3,598,249	-				-1.4
3,598,249	-				+0.3
3,598,288	+		LRK54_RS16355	0.11	+1.1
3,598,288	+		LRK54_RS16355	0.11	-0.9
3,598,288	+		LRK54_RS16355	0.11	+0.1
3,598,289	-		LRK54_RS16355	0.11	+1.1
3,598,289	-		LRK54_RS16355	0.11	-0.4
3,598,296	+		LRK54_RS16355	0.12	+0.4
3,598,296	+		LRK54_RS16355	0.12	+0.2
3,598,296	+		LRK54_RS16355	0.12	-0.9
3,598,296	+		LRK54_RS16355	0.12	+0.7
3,598,296	+		LRK54_RS16355	0.12	+0.3
3,598,296	+		LRK54_RS16355	0.12	-0.7
3,598,296	+		LRK54_RS16355	0.12	+0.4
3,598,297	-		LRK54_RS16355	0.13	-0.4
3,598,297	-		LRK54_RS16355	0.13	+1.1
3,598,297	-		LRK54_RS16355	0.13	+2.4
3,598,297	-		LRK54_RS16355	0.13	-0.7
3,598,297	-		LRK54_RS16355	0.13	+0.5
3,598,297	-		LRK54_RS16355	0.13	-0.3
3,598,297	-		LRK54_RS16355	0.13	-0.6
3,598,297	-		LRK54_RS16355	0.13	-0.8
3,598,297	-		LRK54_RS16355	0.13	+0.4
3,598,297	-		LRK54_RS16355	0.13	-1.6
3,598,693	+		LRK54_RS16355	0.69	-0.4
3,598,693	+		LRK54_RS16355	0.69	+0.7
3,598,693	+		LRK54_RS16355	0.69	+0.6
3,598,693	+		LRK54_RS16355	0.69	-0.6
3,598,836	+		LRK54_RS16355	0.89	+3.0
3,598,836	+		LRK54_RS16355	0.89	+0.1
3,598,836	+		LRK54_RS16355	0.89	+1.2
3,598,836	+		LRK54_RS16355	0.89	+0.8
3,598,837	-		LRK54_RS16355	0.89	-0.1
3,598,908	+				-0.1
3,598,908	+				+0.1
3,598,908	+				+0.3
3,598,908	+				+0.4
3,598,908	+				-1.0
3,598,908	+				+0.4
3,598,908	+				-0.5
3,598,908	+				+0.6
3,598,908	+				+0.2
3,598,908	+				-0.6
3,598,909	-				+0.4
3,598,909	-				+1.4
3,598,909	-				-0.6
3,598,909	-				+1.6
3,598,909	-				-0.5
3,598,909	-				-0.5
3,598,909	-				-0.3