Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS05510

Experiment: NLDM_defined low iron; midlog

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NLDM_defined low iron; midlog
1,187,664	-		LRK54_RS05500	0.25	+1.5
1,187,726	-		LRK54_RS05500	0.39	-0.4
1,188,149	+				+0.5
1,188,149	+				+2.8
1,188,149	+				+0.9
1,188,150	-				-0.8
1,188,150	-				+1.4
1,188,302	+		LRK54_RS05505	0.46	+3.5
1,188,302	+		LRK54_RS05505	0.46	+0.7
1,188,302	+		LRK54_RS05505	0.46	-0.5
1,188,302	+		LRK54_RS05505	0.46	-0.1
1,188,302	+		LRK54_RS05505	0.46	-0.5
1,188,302	+		LRK54_RS05505	0.46	-0.2
1,188,302	+		LRK54_RS05505	0.46	-0.7
1,188,302	+		LRK54_RS05505	0.46	-0.6
1,188,302	+		LRK54_RS05505	0.46	-0.3
1,188,302	+		LRK54_RS05505	0.46	-1.1
1,188,302	+		LRK54_RS05505	0.46	-3.4
1,188,302	+		LRK54_RS05505	0.46	-0.5
1,188,302	+		LRK54_RS05505	0.46	+2.2
1,188,302	+		LRK54_RS05505	0.46	-0.5
1,188,302	+		LRK54_RS05505	0.46	+0.9
1,188,303	-		LRK54_RS05505	0.47	-1.5
1,188,303	-		LRK54_RS05505	0.47	-2.6
1,188,303	-		LRK54_RS05505	0.47	-2.1
1,188,303	-		LRK54_RS05505	0.47	-0.1
1,188,303	-		LRK54_RS05505	0.47	+1.0
1,188,303	-		LRK54_RS05505	0.47	-3.1
1,188,303	-		LRK54_RS05505	0.47	-1.8
1,188,303	-		LRK54_RS05505	0.47	-1.5
1,188,303	-		LRK54_RS05505	0.47	-1.0
1,188,303	-		LRK54_RS05505	0.47	-2.1
1,188,303	-		LRK54_RS05505	0.47	-1.2
1,188,303	-		LRK54_RS05505	0.47	+0.1
1,188,303	-		LRK54_RS05505	0.47	-0.7
1,188,303	-		LRK54_RS05505	0.47	-1.5
1,188,303	-		LRK54_RS05505	0.47	+0.7
1,188,303	-		LRK54_RS05505	0.47	-1.5
1,188,303	-		LRK54_RS05505	0.47	-0.3
1,188,303	-		LRK54_RS05505	0.47	-1.6
1,188,389	+		LRK54_RS05505	0.68	-1.3
1,188,389	+		LRK54_RS05505	0.68	-1.9
1,188,389	+		LRK54_RS05505	0.68	+0.1
1,188,389	+		LRK54_RS05505	0.68	-0.1
1,188,390	-		LRK54_RS05505	0.69	-1.7
1,188,390	-		LRK54_RS05505	0.69	-0.5
1,188,390	-		LRK54_RS05505	0.69	-1.6
1,188,390	-		LRK54_RS05505	0.69	-1.6
1,188,390	-		LRK54_RS05505	0.69	+0.4
1,188,390	-		LRK54_RS05505	0.69	+0.3
1,188,547	-				-1.6
1,188,561	+				-0.2
1,188,561	+				-0.2
1,188,562	-				-0.4
1,188,562	-				+0.4
1,188,562	-				-0.2
1,188,645	+				-0.9
1,188,645	+				+0.4
1,188,645	+				-0.2
1,188,646	-				-1.2
1,188,646	-				-2.2
1,188,716	+		LRK54_RS05510	0.10	-1.4
1,188,716	+		LRK54_RS05510	0.10	-0.2
1,188,716	+		LRK54_RS05510	0.10	-1.2
1,188,716	+		LRK54_RS05510	0.10	-0.2
1,188,716	+		LRK54_RS05510	0.10	-0.9
1,188,717	-		LRK54_RS05510	0.10	-1.1
1,188,717	-		LRK54_RS05510	0.10	-3.3
1,188,984	+		LRK54_RS05510	0.34	+2.5
1,188,984	+		LRK54_RS05510	0.34	-0.8
1,188,984	+		LRK54_RS05510	0.34	-0.2
1,188,984	+		LRK54_RS05510	0.34	+0.2
1,188,985	-		LRK54_RS05510	0.35	-1.4
1,188,985	-		LRK54_RS05510	0.35	-1.3
1,189,125	+		LRK54_RS05510	0.47	-2.0
1,189,125	+		LRK54_RS05510	0.47	+1.5
1,189,125	+		LRK54_RS05510	0.47	+1.5
1,189,126	-		LRK54_RS05510	0.47	-2.1
1,189,126	-		LRK54_RS05510	0.47	-0.1
1,189,398	+		LRK54_RS05510	0.72	+0.2
1,189,398	+		LRK54_RS05510	0.72	+0.5
1,189,398	+		LRK54_RS05510	0.72	-1.3
1,189,398	+		LRK54_RS05510	0.72	+1.5
1,189,398	+		LRK54_RS05510	0.72	-1.1
1,189,398	+		LRK54_RS05510	0.72	-1.1
1,189,398	+		LRK54_RS05510	0.72	-0.1
1,189,398	+		LRK54_RS05510	0.72	-0.7
1,189,399	-		LRK54_RS05510	0.72	+0.1
1,189,399	-		LRK54_RS05510	0.72	-1.8
1,189,399	-		LRK54_RS05510	0.72	-3.1
1,189,399	-		LRK54_RS05510	0.72	-1.7
1,189,399	-		LRK54_RS05510	0.72	+0.5
1,189,399	-		LRK54_RS05510	0.72	-1.2
1,189,399	-		LRK54_RS05510	0.72	-0.8
1,189,399	-		LRK54_RS05510	0.72	-2.3
1,189,399	-		LRK54_RS05510	0.72	+1.5
1,189,399	-		LRK54_RS05510	0.72	-0.2
1,189,399	-		LRK54_RS05510	0.72	-1.6
1,189,399	-		LRK54_RS05510	0.72	-1.5
1,189,399	-		LRK54_RS05510	0.72	+0.5
1,189,399	-		LRK54_RS05510	0.72	+0.2
1,189,399	-		LRK54_RS05510	0.72	-1.0
1,189,399	-		LRK54_RS05510	0.72	-2.0
1,189,399	-		LRK54_RS05510	0.72	-1.1
1,189,399	-		LRK54_RS05510	0.72	+1.5
1,189,401	+		LRK54_RS05510	0.72	-0.9
1,189,401	+		LRK54_RS05510	0.72	-2.6
1,189,401	+		LRK54_RS05510	0.72	-0.1
1,189,401	+		LRK54_RS05510	0.72	-4.1
1,189,401	+		LRK54_RS05510	0.72	-0.9
1,189,401	+		LRK54_RS05510	0.72	-0.1
1,189,401	+		LRK54_RS05510	0.72	+1.2
1,189,401	+		LRK54_RS05510	0.72	-0.1
1,189,401	+		LRK54_RS05510	0.72	+1.4
1,189,401	+		LRK54_RS05510	0.72	-1.5
1,189,401	+		LRK54_RS05510	0.72	+0.5
1,189,401	+		LRK54_RS05510	0.72	-0.1
1,189,402	-		LRK54_RS05510	0.72	+0.4
1,189,402	-		LRK54_RS05510	0.72	-0.5
1,189,402	-		LRK54_RS05510	0.72	+1.9
1,189,402	-		LRK54_RS05510	0.72	-0.8
1,189,402	-		LRK54_RS05510	0.72	+0.5
1,189,402	-		LRK54_RS05510	0.72	-1.1
1,189,402	-		LRK54_RS05510	0.72	-0.3
1,189,402	-		LRK54_RS05510	0.72	-1.7
1,189,402	-		LRK54_RS05510	0.72	-1.5
1,189,402	-		LRK54_RS05510	0.72	-1.3
1,189,452	+		LRK54_RS05510	0.77	-0.5
1,189,452	+		LRK54_RS05510	0.77	-0.0
1,189,452	+		LRK54_RS05510	0.77	-0.6
1,189,452	+		LRK54_RS05510	0.77	-1.5
1,189,452	+		LRK54_RS05510	0.77	-1.5
1,189,452	+		LRK54_RS05510	0.77	+0.5
1,189,452	+		LRK54_RS05510	0.77	-0.1
1,189,452	+		LRK54_RS05510	0.77	+0.1
1,189,453	-				-2.1
1,189,453	-		LRK54_RS05510	0.77	-1.1
1,189,453	-		LRK54_RS05510	0.77	-1.5
1,189,453	-		LRK54_RS05510	0.77	-2.7
1,189,453	-		LRK54_RS05510	0.77	-1.2
1,189,453	-		LRK54_RS05510	0.77	-0.4
1,189,453	-		LRK54_RS05510	0.77	-1.1
1,189,453	-		LRK54_RS05510	0.77	+0.2
1,189,453	-		LRK54_RS05510	0.77	-2.1
1,189,453	-		LRK54_RS05510	0.77	-0.2
1,189,453	-		LRK54_RS05510	0.77	-0.4
1,189,453	-		LRK54_RS05510	0.77	-1.6
1,189,453	-		LRK54_RS05510	0.77	-0.4
1,189,617	+				+3.8
1,189,617	+				-2.8
1,189,617	+				-0.5
1,189,617	+				+1.5
1,189,617	+				-0.8
1,189,617	+				-1.4
1,189,617	+				+1.6
1,189,617	+				-1.5
1,189,618	-				-0.5
1,189,618	-				-1.8
1,189,618	-				-1.6
1,189,618	-				+0.5
1,189,618	-				-0.4
1,189,618	-				-2.5
1,189,618	-				-2.3
1,189,618	-				+1.5
1,189,618	-				-0.9
1,189,618	-				-2.8
1,189,618	-				+0.3
1,189,618	-				-0.2
1,189,688	+				-1.6
1,189,688	+				-0.2
1,189,688	+				+0.6
1,189,688	+				-1.9
1,189,688	+				+1.5
1,189,689	-				-1.3
1,189,689	-				-0.3
1,189,689	-				-0.5
1,189,689	-				+0.5
1,189,689	-				+0.6
1,189,740	-				+0.9
1,189,912	+				+0.1
1,189,912	+				+0.5
1,189,912	+				-1.8
1,189,912	+				+1.4
1,189,913	-				+1.5
1,189,913	-				-1.3
1,189,966	+				+1.2
1,189,967	-				-0.7
1,190,230	+		LRK54_RS05515	0.23	+0.8
1,190,230	+		LRK54_RS05515	0.23	+0.1
1,190,230	+		LRK54_RS05515	0.23	+0.1
1,190,230	+		LRK54_RS05515	0.23	+0.7
1,190,230	+		LRK54_RS05515	0.23	+0.1
1,190,230	+		LRK54_RS05515	0.23	+0.7
1,190,230	+		LRK54_RS05515	0.23	-0.6
1,190,230	+		LRK54_RS05515	0.23	-2.2
1,190,230	+		LRK54_RS05515	0.23	+0.6
1,190,230	+		LRK54_RS05515	0.23	-0.1
1,190,230	+		LRK54_RS05515	0.23	-0.8
1,190,230	+		LRK54_RS05515	0.23	+0.7
1,190,230	+		LRK54_RS05515	0.23	-2.1
1,190,230	+		LRK54_RS05515	0.23	+2.5
1,190,230	+		LRK54_RS05515	0.23	+0.1
1,190,230	+		LRK54_RS05515	0.23	-2.4
1,190,230	+		LRK54_RS05515	0.23	-1.5
1,190,231	-		LRK54_RS05515	0.23	+0.3
1,190,231	-		LRK54_RS05515	0.23	+1.5
1,190,231	-		LRK54_RS05515	0.23	+0.7
1,190,231	-		LRK54_RS05515	0.23	+0.2
1,190,231	-		LRK54_RS05515	0.23	+0.9
1,190,231	-		LRK54_RS05515	0.23	-0.4
1,190,231	-		LRK54_RS05515	0.23	+0.4
1,190,231	-		LRK54_RS05515	0.23	+0.8
1,190,231	-		LRK54_RS05515	0.23	+0.3
1,190,231	-		LRK54_RS05515	0.23	-1.2
1,190,231	-		LRK54_RS05515	0.23	+0.5
1,190,231	-		LRK54_RS05515	0.23	-0.8
1,190,231	-		LRK54_RS05515	0.23	-1.6
1,190,231	-		LRK54_RS05515	0.23	+1.5
1,190,231	-		LRK54_RS05515	0.23	+0.5
1,190,231	-		LRK54_RS05515	0.23	+1.5
1,190,491	+		LRK54_RS05515	0.37	-0.1
1,190,491	+		LRK54_RS05515	0.37	-0.8
1,190,491	+		LRK54_RS05515	0.37	+0.2
1,190,491	+		LRK54_RS05515	0.37	-1.5
1,190,491	+		LRK54_RS05515	0.37	-0.3
1,190,491	+		LRK54_RS05515	0.37	-0.1
1,190,492	-		LRK54_RS05515	0.37	-0.9
1,190,492	-		LRK54_RS05515	0.37	-1.7
1,190,492	-		LRK54_RS05515	0.37	+0.2
1,190,492	-		LRK54_RS05515	0.37	-0.1
1,190,492	-		LRK54_RS05515	0.37	-0.3
1,190,492	-		LRK54_RS05515	0.37	-0.7
1,190,492	-		LRK54_RS05515	0.37	-0.3
1,190,492	-		LRK54_RS05515	0.37	-1.0
1,190,492	-		LRK54_RS05515	0.37	+1.5
1,190,492	-		LRK54_RS05515	0.37	-0.8
1,190,492	-		LRK54_RS05515	0.37	-1.5
1,190,492	-		LRK54_RS05515	0.37	-1.4
1,190,492	-		LRK54_RS05515	0.37	+0.8
1,190,492	-		LRK54_RS05515	0.37	+1.5
1,190,492	-		LRK54_RS05515	0.37	+0.3
1,190,492	-		LRK54_RS05515	0.37	-1.5
1,190,533	+		LRK54_RS05515	0.39	-1.6
1,190,534	-		LRK54_RS05515	0.39	+0.2
1,190,534	-		LRK54_RS05515	0.39	-0.1
1,190,534	-		LRK54_RS05515	0.39	-1.0
1,190,653	+		LRK54_RS05515	0.45	-0.8
1,190,653	+		LRK54_RS05515	0.45	-0.8
1,190,653	+		LRK54_RS05515	0.45	-0.6
1,190,653	+		LRK54_RS05515	0.45	-0.3
1,190,653	+		LRK54_RS05515	0.45	-0.5
1,190,653	+		LRK54_RS05515	0.45	-0.4
1,190,653	+		LRK54_RS05515	0.45	-0.5
1,190,653	+		LRK54_RS05515	0.45	-0.5
1,190,653	+		LRK54_RS05515	0.45	-0.5
1,190,653	+		LRK54_RS05515	0.45	+0.6
1,190,653	+		LRK54_RS05515	0.45	-0.1
1,190,653	+		LRK54_RS05515	0.45	-1.3
1,190,654	-		LRK54_RS05515	0.45	-0.4
1,190,654	-		LRK54_RS05515	0.45	+0.2
1,190,654	-		LRK54_RS05515	0.45	-1.0
1,190,654	-		LRK54_RS05515	0.45	-0.6
1,190,654	-		LRK54_RS05515	0.45	-0.8
1,190,654	-		LRK54_RS05515	0.45	-0.9
1,190,654	-		LRK54_RS05515	0.45	-0.1
1,190,654	-		LRK54_RS05515	0.45	-0.5