Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS04940

Experiment: NLDM_defined low iron; midlog

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NLDM_defined low iron; midlog
1,045,685	+				+0.4
1,045,685	+				+1.5
1,045,686	-				-1.5
1,045,686	-				+0.1
1,045,716	+				-0.5
1,045,794	+		LRK54_RS04935	0.12	+0.3
1,045,794	+		LRK54_RS04935	0.12	+0.1
1,045,794	+		LRK54_RS04935	0.12	+0.1
1,045,794	+		LRK54_RS04935	0.12	-1.5
1,045,794	+		LRK54_RS04935	0.12	-1.6
1,045,794	+		LRK54_RS04935	0.12	-1.1
1,045,795	-		LRK54_RS04935	0.13	-0.1
1,045,795	-		LRK54_RS04935	0.13	+0.1
1,045,795	-		LRK54_RS04935	0.13	-0.6
1,045,878	+		LRK54_RS04935	0.26	-0.3
1,045,878	+		LRK54_RS04935	0.26	-0.4
1,045,878	+		LRK54_RS04935	0.26	-0.9
1,045,878	+		LRK54_RS04935	0.26	-2.1
1,045,878	+		LRK54_RS04935	0.26	-0.5
1,045,878	+		LRK54_RS04935	0.26	-0.5
1,045,879	-		LRK54_RS04935	0.26	-2.5
1,045,879	-		LRK54_RS04935	0.26	-1.8
1,045,879	-		LRK54_RS04935	0.26	+0.9
1,045,879	-		LRK54_RS04935	0.26	+0.1
1,045,879	-		LRK54_RS04935	0.26	-0.6
1,045,971	+		LRK54_RS04935	0.40	-0.8
1,045,971	+		LRK54_RS04935	0.40	+0.2
1,045,971	+		LRK54_RS04935	0.40	+0.1
1,045,971	+		LRK54_RS04935	0.40	+0.9
1,045,971	+		LRK54_RS04935	0.40	-0.3
1,045,972	-		LRK54_RS04935	0.41	-0.1
1,046,055	+		LRK54_RS04935	0.54	-0.2
1,046,056	-		LRK54_RS04935	0.54	-1.5
1,046,061	+		LRK54_RS04935	0.55	+0.5
1,046,061	+		LRK54_RS04935	0.55	-1.6
1,046,061	+		LRK54_RS04935	0.55	+0.3
1,046,061	+		LRK54_RS04935	0.55	+0.2
1,046,061	+		LRK54_RS04935	0.55	-1.1
1,046,061	+		LRK54_RS04935	0.55	+1.5
1,046,061	+		LRK54_RS04935	0.55	+0.1
1,046,061	+		LRK54_RS04935	0.55	-0.1
1,046,061	+		LRK54_RS04935	0.55	-0.4
1,046,061	+		LRK54_RS04935	0.55	-0.1
1,046,061	+		LRK54_RS04935	0.55	-0.5
1,046,061	+		LRK54_RS04935	0.55	-0.3
1,046,061	+		LRK54_RS04935	0.55	-1.3
1,046,062	-		LRK54_RS04935	0.55	+0.9
1,046,062	-		LRK54_RS04935	0.55	-0.3
1,046,062	-		LRK54_RS04935	0.55	-0.2
1,046,062	-		LRK54_RS04935	0.55	+0.5
1,046,062	-		LRK54_RS04935	0.55	+0.3
1,046,062	-		LRK54_RS04935	0.55	+1.5
1,046,062	-		LRK54_RS04935	0.55	+0.0
1,046,062	-		LRK54_RS04935	0.55	-0.9
1,046,062	-		LRK54_RS04935	0.55	-1.2
1,046,178	+		LRK54_RS04935	0.73	-1.8
1,046,178	+		LRK54_RS04935	0.73	-0.3
1,046,178	+		LRK54_RS04935	0.73	-0.3
1,046,178	+		LRK54_RS04935	0.73	+0.7
1,046,178	+		LRK54_RS04935	0.73	-0.6
1,046,178	+		LRK54_RS04935	0.73	-1.5
1,046,178	+		LRK54_RS04935	0.73	-1.3
1,046,178	+		LRK54_RS04935	0.73	+0.3
1,046,178	+		LRK54_RS04935	0.73	+0.1
1,046,178	+		LRK54_RS04935	0.73	-1.1
1,046,178	+		LRK54_RS04935	0.73	+1.0
1,046,178	+		LRK54_RS04935	0.73	+0.4
1,046,178	+		LRK54_RS04935	0.73	-0.1
1,046,179	-		LRK54_RS04935	0.73	-0.1
1,046,179	-		LRK54_RS04935	0.73	-0.4
1,046,179	-		LRK54_RS04935	0.73	-0.6
1,046,179	-		LRK54_RS04935	0.73	+0.3
1,046,179	-		LRK54_RS04935	0.73	+1.5
1,046,179	-		LRK54_RS04935	0.73	-1.1
1,046,179	-		LRK54_RS04935	0.73	-1.1
1,046,179	-		LRK54_RS04935	0.73	+0.2
1,046,179	-		LRK54_RS04935	0.73	-0.4
1,046,179	-		LRK54_RS04935	0.73	-0.9
1,046,179	-		LRK54_RS04935	0.73	+0.2
1,046,179	-		LRK54_RS04935	0.73	-0.2
1,046,179	-		LRK54_RS04935	0.73	+1.2
1,046,179	-		LRK54_RS04935	0.73	-1.3
1,046,179	-		LRK54_RS04935	0.73	+0.5
1,046,179	-		LRK54_RS04935	0.73	-0.9
1,046,179	-		LRK54_RS04935	0.73	-0.5
1,046,179	-		LRK54_RS04935	0.73	-1.5
1,046,190	+		LRK54_RS04935	0.75	-1.5
1,046,190	+		LRK54_RS04935	0.75	-0.3
1,046,190	+		LRK54_RS04935	0.75	-0.4
1,046,190	+		LRK54_RS04935	0.75	-0.7
1,046,217	+		LRK54_RS04935	0.79	+0.9
1,046,218	-		LRK54_RS04935	0.79	+1.7
1,046,218	-		LRK54_RS04935	0.79	-0.9
1,046,218	-		LRK54_RS04935	0.79	+0.5
1,046,406	+				+0.1
1,046,406	+				-1.5
1,046,406	+				-0.5
1,046,407	-				-0.4
1,046,407	-				-0.7
1,046,407	-				+0.6
1,046,407	-				-1.5
1,046,407	-				+0.5
1,046,586	+		LRK54_RS04940	0.46	-0.6
1,046,586	+		LRK54_RS04940	0.46	-1.0
1,046,586	+		LRK54_RS04940	0.46	-0.8
1,046,587	-		LRK54_RS04940	0.46	+0.2
1,046,736	+				+2.2
1,046,736	+				-0.3
1,046,736	+				+0.3
1,046,736	+				-1.7
1,046,736	+				-0.5
1,046,736	+				+0.5
1,046,736	+				-0.5
1,046,737	-				-0.4
1,046,737	-				-0.4
1,046,737	-				-0.5
1,046,737	-				+1.5
1,046,737	-				-0.7
1,046,821	+				+0.2
1,046,821	+				-0.7
1,046,821	+				+2.3
1,046,821	+				+0.6
1,046,821	+				+0.1
1,046,821	+				+0.7
1,046,821	+				-0.1
1,046,821	+				-1.7
1,046,821	+				-0.2
1,046,822	-				-0.8
1,046,822	-				+0.5
1,046,822	-				-0.1
1,046,856	+				+2.9
1,046,856	+				-1.1
1,046,856	+				-0.5
1,046,856	+				-0.8
1,046,856	+				-0.1
1,046,856	+				+1.2
1,046,856	+				-0.7
1,046,856	+				+0.1
1,046,856	+				-1.5
1,046,856	+				+0.2
1,046,857	-				+0.5
1,046,857	-				+0.1
1,046,857	-				-0.9
1,046,857	-				+0.1
1,046,857	-				-0.3
1,046,857	-				-1.0
1,046,857	-				+0.7
1,046,859	+				-0.1
1,046,859	+				-0.5
1,046,859	+				-0.7
1,046,860	-				+0.9
1,046,860	-				-0.9
1,046,860	-				+0.9
1,046,949	+				+0.6
1,046,950	-				-0.4
1,046,957	+				+1.5
1,046,957	+				+0.5
1,046,958	+				+0.4
1,046,958	-				+0.2
1,046,958	-				+0.1
1,046,959	+				-1.2
1,046,959	+				-0.2
1,046,959	+				+0.0
1,046,959	+				-1.0
1,046,959	+				-1.3
1,046,959	+				+0.5
1,046,959	+				+0.7
1,046,959	+				+0.3
1,046,959	+				+1.5
1,046,959	+				-0.4
1,046,959	+				-0.8
1,046,959	+				+0.5
1,046,960	-				+0.8
1,046,960	-				-0.8
1,046,960	-				+0.5
1,046,960	-				-1.5
1,046,960	-				+1.7
1,046,960	-				+0.1
1,046,960	-				-1.0
1,046,960	-				-0.7
1,046,960	-				-0.0
1,046,960	-				+0.4
1,046,965	+				+0.1
1,046,966	-				-1.9
1,046,991	-				+1.2
1,046,991	-				+1.2
1,046,991	-				+0.1
1,047,542	+		LRK54_RS04945	0.21	-0.4
1,047,542	+		LRK54_RS04945	0.21	-1.1
1,047,543	-		LRK54_RS04945	0.21	+0.7
1,047,543	-		LRK54_RS04945	0.21	-1.4
1,047,543	-		LRK54_RS04945	0.21	+0.0
1,047,629	+		LRK54_RS04945	0.25	-0.1
1,047,629	+		LRK54_RS04945	0.25	-0.5
1,047,629	+		LRK54_RS04945	0.25	+1.5
1,047,630	-		LRK54_RS04945	0.25	-0.2
1,047,630	-		LRK54_RS04945	0.25	+0.7
1,047,735	-		LRK54_RS04945	0.29	+0.2
1,047,735	-		LRK54_RS04945	0.29	-0.4