Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS21565

Experiment: Brucella 1x (C) complex media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS19220 and HMPREF1058_RS19215 are separated by 125 nucleotidesHMPREF1058_RS19215 and HMPREF1058_RS21565 are separated by 81 nucleotidesHMPREF1058_RS21565 and HMPREF1058_RS19210 are separated by 4 nucleotidesHMPREF1058_RS19210 and HMPREF1058_RS19205 overlap by 4 nucleotidesHMPREF1058_RS19205 and HMPREF1058_RS19200 overlap by 10 nucleotides HMPREF1058_RS19220: HMPREF1058_RS19220 - tape measure protein, at 1 to 1,134 _RS19220 HMPREF1058_RS19215: HMPREF1058_RS19215 - hypothetical protein, at 1,260 to 1,973 _RS19215 HMPREF1058_RS21565: HMPREF1058_RS21565 - hypothetical protein, at 2,055 to 2,735 _RS21565 HMPREF1058_RS19210: HMPREF1058_RS19210 - hypothetical protein, at 2,740 to 3,141 _RS19210 HMPREF1058_RS19205: HMPREF1058_RS19205 - hypothetical protein, at 3,138 to 3,599 _RS19205 HMPREF1058_RS19200: HMPREF1058_RS19200 - hypothetical protein, at 3,590 to 3,913 _RS19200 Position (kb) 2 3Strain fitness (log2 ratio) -2 -1 0 1 2at 1.113 kb on + strandat 1.114 kb on - strandat 1.206 kb on + strandat 1.206 kb on + strandat 1.206 kb on + strandat 1.206 kb on + strandat 1.206 kb on + strandat 1.207 kb on - strandat 1.207 kb on - strandat 1.207 kb on - strandat 1.207 kb on - strandat 1.207 kb on - strandat 1.207 kb on - strandat 1.371 kb on + strand, within HMPREF1058_RS19215at 1.372 kb on - strandat 1.405 kb on - strand, within HMPREF1058_RS19215at 1.414 kb on + strand, within HMPREF1058_RS19215at 1.414 kb on + strand, within HMPREF1058_RS19215at 1.414 kb on + strand, within HMPREF1058_RS19215at 1.415 kb on - strand, within HMPREF1058_RS19215at 1.473 kb on + strand, within HMPREF1058_RS19215at 1.474 kb on - strand, within HMPREF1058_RS19215at 1.599 kb on - strand, within HMPREF1058_RS19215at 1.599 kb on - strand, within HMPREF1058_RS19215at 1.601 kb on + strand, within HMPREF1058_RS19215at 1.611 kb on - strand, within HMPREF1058_RS19215at 1.626 kb on + strand, within HMPREF1058_RS19215at 1.790 kb on - strand, within HMPREF1058_RS19215at 1.819 kb on - strand, within HMPREF1058_RS19215at 1.836 kb on + strand, within HMPREF1058_RS19215at 2.126 kb on + strand, within HMPREF1058_RS21565at 2.127 kb on - strand, within HMPREF1058_RS21565at 2.154 kb on - strand, within HMPREF1058_RS21565at 2.155 kb on + strand, within HMPREF1058_RS21565at 2.155 kb on + strand, within HMPREF1058_RS21565at 2.156 kb on - strand, within HMPREF1058_RS21565at 2.157 kb on + strand, within HMPREF1058_RS21565at 2.157 kb on + strand, within HMPREF1058_RS21565at 2.158 kb on - strand, within HMPREF1058_RS21565at 2.158 kb on - strand, within HMPREF1058_RS21565at 2.158 kb on - strand, within HMPREF1058_RS21565at 2.328 kb on - strand, within HMPREF1058_RS21565at 2.380 kb on + strand, within HMPREF1058_RS21565at 2.381 kb on - strand, within HMPREF1058_RS21565at 2.462 kb on - strand, within HMPREF1058_RS21565at 2.542 kb on + strand, within HMPREF1058_RS21565at 2.557 kb on + strand, within HMPREF1058_RS21565at 2.709 kb on - strandat 2.712 kb on - strandat 2.759 kb on + strandat 2.760 kb on - strandat 2.764 kb on + strandat 2.769 kb on + strandat 3.010 kb on + strand, within HMPREF1058_RS19210at 3.010 kb on + strand, within HMPREF1058_RS19210at 3.011 kb on - strand, within HMPREF1058_RS19210at 3.012 kb on + strand, within HMPREF1058_RS19210at 3.104 kb on + strandat 3.104 kb on + strandat 3.108 kb on + strandat 3.109 kb on - strandat 3.109 kb on - strandat 3.164 kb on + strandat 3.217 kb on - strand, within HMPREF1058_RS19205at 3.271 kb on - strand, within HMPREF1058_RS19205at 3.317 kb on + strand, within HMPREF1058_RS19205at 3.357 kb on + strand, within HMPREF1058_RS19205at 3.376 kb on + strand, within HMPREF1058_RS19205at 3.522 kb on + strand, within HMPREF1058_RS19205at 3.600 kb on - strandat 3.611 kb on + strandat 3.611 kb on + strandat 3.695 kb on - strand, within HMPREF1058_RS19200at 3.735 kb on + strand, within HMPREF1058_RS19200

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Per-strain Table

Position Strand Gene LocusTag Fraction Brucella 1x (C) complex media
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1,113 + -0.7
1,114 - -0.2
1,206 + +1.1
1,206 + +1.9
1,206 + +0.7
1,206 + +0.2
1,206 + -1.6
1,207 - +0.1
1,207 - -0.4
1,207 - +0.5
1,207 - +0.8
1,207 - +0.5
1,207 - -0.6
1,371 + HMPREF1058_RS19215 0.16 -0.1
1,372 - -0.3
1,405 - HMPREF1058_RS19215 0.20 +0.5
1,414 + HMPREF1058_RS19215 0.22 +0.1
1,414 + HMPREF1058_RS19215 0.22 -2.1
1,414 + HMPREF1058_RS19215 0.22 -0.0
1,415 - HMPREF1058_RS19215 0.22 +0.3
1,473 + HMPREF1058_RS19215 0.30 +0.3
1,474 - HMPREF1058_RS19215 0.30 -0.0
1,599 - HMPREF1058_RS19215 0.47 +0.4
1,599 - HMPREF1058_RS19215 0.47 +0.7
1,601 + HMPREF1058_RS19215 0.48 +2.7
1,611 - HMPREF1058_RS19215 0.49 +0.5
1,626 + HMPREF1058_RS19215 0.51 +0.6
1,790 - HMPREF1058_RS19215 0.74 +0.5
1,819 - HMPREF1058_RS19215 0.78 +0.1
1,836 + HMPREF1058_RS19215 0.81 +0.2
2,126 + HMPREF1058_RS21565 0.10 -1.1
2,127 - HMPREF1058_RS21565 0.11 -0.9
2,154 - HMPREF1058_RS21565 0.15 -1.4
2,155 + HMPREF1058_RS21565 0.15 -1.5
2,155 + HMPREF1058_RS21565 0.15 -0.3
2,156 - HMPREF1058_RS21565 0.15 +0.8
2,157 + HMPREF1058_RS21565 0.15 -1.7
2,157 + HMPREF1058_RS21565 0.15 +0.4
2,158 - HMPREF1058_RS21565 0.15 -1.1
2,158 - HMPREF1058_RS21565 0.15 +0.9
2,158 - HMPREF1058_RS21565 0.15 -0.8
2,328 - HMPREF1058_RS21565 0.40 -0.3
2,380 + HMPREF1058_RS21565 0.48 -1.5
2,381 - HMPREF1058_RS21565 0.48 +0.7
2,462 - HMPREF1058_RS21565 0.60 -0.2
2,542 + HMPREF1058_RS21565 0.72 -0.6
2,557 + HMPREF1058_RS21565 0.74 +0.7
2,709 - -0.5
2,712 - -1.3
2,759 + +1.5
2,760 - +0.7
2,764 + -0.2
2,769 + -1.2
3,010 + HMPREF1058_RS19210 0.67 +0.5
3,010 + HMPREF1058_RS19210 0.67 -0.2
3,011 - HMPREF1058_RS19210 0.67 +0.5
3,012 + HMPREF1058_RS19210 0.68 +0.0
3,104 + -0.8
3,104 + +0.2
3,108 + -0.4
3,109 - -0.2
3,109 - +0.7
3,164 + +0.4
3,217 - HMPREF1058_RS19205 0.17 +0.7
3,271 - HMPREF1058_RS19205 0.29 -0.2
3,317 + HMPREF1058_RS19205 0.39 -0.1
3,357 + HMPREF1058_RS19205 0.47 -0.9
3,376 + HMPREF1058_RS19205 0.52 +0.5
3,522 + HMPREF1058_RS19205 0.83 -0.2
3,600 - -1.3
3,611 + -1.0
3,611 + +0.3
3,695 - HMPREF1058_RS19200 0.32 +0.1
3,735 + HMPREF1058_RS19200 0.45 +0.5

Or see this region's nucleotide sequence