Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS21310

Experiment: Brucella 1x (C) complex media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS15605 and HMPREF1058_RS21310 are separated by 6 nucleotidesHMPREF1058_RS21310 and HMPREF1058_RS15600 are separated by 18 nucleotidesHMPREF1058_RS15600 and HMPREF1058_RS15595 are separated by 13 nucleotides HMPREF1058_RS15605: HMPREF1058_RS15605 - 3-methyl-2-oxobutanoate dehydrogenase subunit VorB, at 876,937 to 878,019 _RS15605 HMPREF1058_RS21310: HMPREF1058_RS21310 - hypothetical protein, at 878,026 to 878,193 _RS21310 HMPREF1058_RS15600: HMPREF1058_RS15600 - 2-oxoglutarate oxidoreductase, at 878,212 to 878,976 _RS15600 HMPREF1058_RS15595: HMPREF1058_RS15595 - 2-oxoacid:acceptor oxidoreductase family protein, at 878,990 to 879,532 _RS15595 Position (kb) 878 879Strain fitness (log2 ratio) -3 -2 -1 0 1at 877.985 kb on + strandat 878.009 kb on + strandat 878.051 kb on + strand, within HMPREF1058_RS21310at 878.051 kb on + strand, within HMPREF1058_RS21310at 878.131 kb on + strand, within HMPREF1058_RS21310at 878.131 kb on + strand, within HMPREF1058_RS21310at 878.131 kb on + strand, within HMPREF1058_RS21310at 878.131 kb on + strand, within HMPREF1058_RS21310at 878.189 kb on + strandat 878.191 kb on + strandat 878.974 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Brucella 1x (C) complex media
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877,985 + -0.3
878,009 + -0.1
878,051 + HMPREF1058_RS21310 0.15 -0.4
878,051 + HMPREF1058_RS21310 0.15 -0.6
878,131 + HMPREF1058_RS21310 0.62 +0.1
878,131 + HMPREF1058_RS21310 0.62 -0.9
878,131 + HMPREF1058_RS21310 0.62 -2.8
878,131 + HMPREF1058_RS21310 0.62 +1.7
878,189 + +0.2
878,191 + -1.2
878,974 + -0.7

Or see this region's nucleotide sequence