Experiment: Brucella 1x (C) complex media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS18530 and HMPREF1058_RS18525 are separated by 162 nucleotides HMPREF1058_RS18525 and HMPREF1058_RS21580 overlap by 35 nucleotides HMPREF1058_RS21580 and HMPREF1058_RS18520 are separated by 159 nucleotides
HMPREF1058_RS18530: HMPREF1058_RS18530 - ATP-binding protein, at 132,829 to 134,397
_RS18530
HMPREF1058_RS18525: HMPREF1058_RS18525 - hypothetical protein, at 134,560 to 134,757
_RS18525
HMPREF1058_RS21580: HMPREF1058_RS21580 - hypothetical protein, at 134,723 to 134,872
_RS21580
HMPREF1058_RS18520: HMPREF1058_RS18520 - hypothetical protein, at 135,032 to 135,688
_RS18520
Position (kb) 134
135 Strain fitness (log2 ratio) -1
0
1 at 134.473 kb on - strand at 134.516 kb on + strand at 134.516 kb on + strand at 134.517 kb on - strand at 134.517 kb on - strand at 134.575 kb on + strand at 134.672 kb on + strand, within HMPREF1058_RS18525 at 134.684 kb on - strand, within HMPREF1058_RS18525 at 134.773 kb on + strand, within HMPREF1058_RS21580 at 134.822 kb on + strand, within HMPREF1058_RS21580 at 134.886 kb on - strand at 134.894 kb on - strand at 134.910 kb on - strand at 134.910 kb on - strand at 134.910 kb on - strand at 134.952 kb on + strand at 134.955 kb on - strand at 134.966 kb on + strand at 134.966 kb on + strand at 135.017 kb on - strand at 135.269 kb on + strand, within HMPREF1058_RS18520 at 135.348 kb on + strand, within HMPREF1058_RS18520 at 135.349 kb on - strand, within HMPREF1058_RS18520 at 135.349 kb on - strand, within HMPREF1058_RS18520 at 135.539 kb on + strand, within HMPREF1058_RS18520 at 135.654 kb on - strand at 135.696 kb on - strand at 135.731 kb on + strand at 135.757 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Brucella 1x (C) complex media remove 134,473 - -0.7 134,516 + +1.0 134,516 + -1.4 134,517 - +0.3 134,517 - -0.9 134,575 + -0.7 134,672 + HMPREF1058_RS18525 0.57 -1.4 134,684 - HMPREF1058_RS18525 0.63 -0.6 134,773 + HMPREF1058_RS21580 0.33 -1.5 134,822 + HMPREF1058_RS21580 0.66 -0.5 134,886 - -0.1 134,894 - -0.4 134,910 - -0.5 134,910 - +0.3 134,910 - +1.5 134,952 + +0.2 134,955 - -0.3 134,966 + -0.1 134,966 + -0.0 135,017 - -0.1 135,269 + HMPREF1058_RS18520 0.36 -0.0 135,348 + HMPREF1058_RS18520 0.48 -0.3 135,349 - HMPREF1058_RS18520 0.48 +0.1 135,349 - HMPREF1058_RS18520 0.48 +0.0 135,539 + HMPREF1058_RS18520 0.77 +0.1 135,654 - -0.2 135,696 - +0.7 135,731 + -0.6 135,757 + -0.4
Or see this region's nucleotide sequence