Experiment: Brucella 1x (C) complex media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS0119310 and HMPREF1058_RS18160 are separated by 107 nucleotides HMPREF1058_RS18160 and HMPREF1058_RS18155 are separated by 139 nucleotides HMPREF1058_RS18155 and HMPREF1058_RS18150 are separated by 9 nucleotides HMPREF1058_RS18150 and HMPREF1058_RS18145 are separated by 2 nucleotides
HMPREF1058_RS0119310: HMPREF1058_RS0119310 - DUF3987 domain-containing protein, at 244,138 to 245,163
_RS0119310
HMPREF1058_RS18160: HMPREF1058_RS18160 - hypothetical protein, at 245,271 to 245,513
_RS18160
HMPREF1058_RS18155: HMPREF1058_RS18155 - helix-turn-helix transcriptional regulator, at 245,653 to 246,315
_RS18155
HMPREF1058_RS18150: HMPREF1058_RS18150 - Fic family protein, at 246,325 to 247,065
_RS18150
HMPREF1058_RS18145: HMPREF1058_RS18145 - Fic family protein, at 247,068 to 247,829
_RS18145
Position (kb) 245
246
247 Strain fitness (log2 ratio) -2
-1
0
1
2 at 244.664 kb on + strand, within HMPREF1058_RS0119310 at 244.884 kb on + strand, within HMPREF1058_RS0119310 at 244.931 kb on + strand, within HMPREF1058_RS0119310 at 244.931 kb on + strand at 244.988 kb on - strand, within HMPREF1058_RS0119310 at 244.989 kb on + strand, within HMPREF1058_RS0119310 at 244.990 kb on - strand, within HMPREF1058_RS0119310 at 245.011 kb on + strand, within HMPREF1058_RS0119310 at 245.012 kb on - strand, within HMPREF1058_RS0119310 at 245.014 kb on - strand, within HMPREF1058_RS0119310 at 245.039 kb on + strand, within HMPREF1058_RS0119310 at 245.139 kb on + strand at 245.139 kb on + strand at 245.140 kb on - strand at 245.140 kb on - strand at 245.407 kb on + strand, within HMPREF1058_RS18160 at 245.407 kb on + strand, within HMPREF1058_RS18160 at 245.408 kb on - strand, within HMPREF1058_RS18160 at 245.408 kb on - strand, within HMPREF1058_RS18160 at 245.644 kb on + strand at 245.672 kb on + strand at 245.699 kb on + strand at 245.898 kb on + strand, within HMPREF1058_RS18155 at 246.081 kb on + strand, within HMPREF1058_RS18155 at 246.138 kb on + strand, within HMPREF1058_RS18155 at 246.142 kb on + strand, within HMPREF1058_RS18155 at 246.214 kb on - strand, within HMPREF1058_RS18155 at 246.214 kb on - strand, within HMPREF1058_RS18155 at 246.291 kb on + strand at 246.294 kb on + strand at 246.324 kb on + strand at 246.325 kb on - strand at 246.429 kb on - strand, within HMPREF1058_RS18150 at 246.437 kb on + strand, within HMPREF1058_RS18150 at 246.437 kb on + strand, within HMPREF1058_RS18150 at 246.448 kb on + strand, within HMPREF1058_RS18150 at 246.449 kb on - strand, within HMPREF1058_RS18150 at 246.449 kb on - strand, within HMPREF1058_RS18150 at 246.472 kb on - strand, within HMPREF1058_RS18150 at 246.478 kb on - strand, within HMPREF1058_RS18150 at 246.481 kb on + strand, within HMPREF1058_RS18150 at 246.481 kb on + strand, within HMPREF1058_RS18150 at 246.482 kb on - strand, within HMPREF1058_RS18150 at 246.532 kb on + strand, within HMPREF1058_RS18150 at 246.532 kb on + strand, within HMPREF1058_RS18150 at 246.621 kb on - strand, within HMPREF1058_RS18150 at 246.732 kb on + strand, within HMPREF1058_RS18150 at 246.732 kb on + strand, within HMPREF1058_RS18150 at 246.734 kb on + strand, within HMPREF1058_RS18150 at 246.756 kb on + strand, within HMPREF1058_RS18150 at 246.780 kb on - strand, within HMPREF1058_RS18150 at 246.800 kb on - strand, within HMPREF1058_RS18150 at 246.843 kb on - strand, within HMPREF1058_RS18150 at 246.922 kb on - strand, within HMPREF1058_RS18150 at 246.956 kb on + strand, within HMPREF1058_RS18150 at 246.957 kb on - strand, within HMPREF1058_RS18150 at 246.957 kb on - strand, within HMPREF1058_RS18150 at 246.964 kb on + strand, within HMPREF1058_RS18150 at 246.977 kb on + strand, within HMPREF1058_RS18150 at 247.041 kb on - strand at 247.058 kb on + strand at 247.058 kb on + strand at 247.063 kb on + strand at 247.063 kb on + strand at 247.064 kb on - strand at 247.067 kb on + strand at 247.067 kb on + strand at 247.067 kb on + strand at 247.079 kb on + strand at 247.202 kb on + strand, within HMPREF1058_RS18145 at 247.220 kb on + strand, within HMPREF1058_RS18145 at 247.231 kb on + strand, within HMPREF1058_RS18145 at 247.250 kb on - strand, within HMPREF1058_RS18145 at 247.265 kb on + strand, within HMPREF1058_RS18145 at 247.269 kb on - strand, within HMPREF1058_RS18145
Per-strain Table
Position Strand Gene LocusTag Fraction Brucella 1x (C) complex media remove 244,664 + HMPREF1058_RS0119310 0.51 +0.5 244,884 + HMPREF1058_RS0119310 0.73 +1.1 244,931 + HMPREF1058_RS0119310 0.77 +0.3 244,931 + +2.7 244,988 - HMPREF1058_RS0119310 0.83 -0.0 244,989 + HMPREF1058_RS0119310 0.83 +0.1 244,990 - HMPREF1058_RS0119310 0.83 +0.5 245,011 + HMPREF1058_RS0119310 0.85 -2.4 245,012 - HMPREF1058_RS0119310 0.85 -0.4 245,014 - HMPREF1058_RS0119310 0.85 +0.3 245,039 + HMPREF1058_RS0119310 0.88 +0.1 245,139 + -0.2 245,139 + -0.0 245,140 - -0.1 245,140 - -0.3 245,407 + HMPREF1058_RS18160 0.56 -0.3 245,407 + HMPREF1058_RS18160 0.56 -0.0 245,408 - HMPREF1058_RS18160 0.56 -0.0 245,408 - HMPREF1058_RS18160 0.56 -1.1 245,644 + -0.5 245,672 + +0.5 245,699 + -0.2 245,898 + HMPREF1058_RS18155 0.37 -0.8 246,081 + HMPREF1058_RS18155 0.65 -0.5 246,138 + HMPREF1058_RS18155 0.73 -1.2 246,142 + HMPREF1058_RS18155 0.74 +0.5 246,214 - HMPREF1058_RS18155 0.85 -0.3 246,214 - HMPREF1058_RS18155 0.85 -0.9 246,291 + -0.3 246,294 + +0.5 246,324 + +0.8 246,325 - +0.5 246,429 - HMPREF1058_RS18150 0.14 +0.5 246,437 + HMPREF1058_RS18150 0.15 +0.9 246,437 + HMPREF1058_RS18150 0.15 +0.7 246,448 + HMPREF1058_RS18150 0.17 +0.0 246,449 - HMPREF1058_RS18150 0.17 -1.8 246,449 - HMPREF1058_RS18150 0.17 +0.1 246,472 - HMPREF1058_RS18150 0.20 -0.3 246,478 - HMPREF1058_RS18150 0.21 -1.9 246,481 + HMPREF1058_RS18150 0.21 -0.4 246,481 + HMPREF1058_RS18150 0.21 -0.2 246,482 - HMPREF1058_RS18150 0.21 -1.4 246,532 + HMPREF1058_RS18150 0.28 +0.5 246,532 + HMPREF1058_RS18150 0.28 +0.2 246,621 - HMPREF1058_RS18150 0.40 -1.2 246,732 + HMPREF1058_RS18150 0.55 -0.4 246,732 + HMPREF1058_RS18150 0.55 -1.2 246,734 + HMPREF1058_RS18150 0.55 +0.5 246,756 + HMPREF1058_RS18150 0.58 -0.7 246,780 - HMPREF1058_RS18150 0.61 -0.4 246,800 - HMPREF1058_RS18150 0.64 -1.2 246,843 - HMPREF1058_RS18150 0.70 -0.2 246,922 - HMPREF1058_RS18150 0.81 +1.9 246,956 + HMPREF1058_RS18150 0.85 +0.7 246,957 - HMPREF1058_RS18150 0.85 -0.6 246,957 - HMPREF1058_RS18150 0.85 -0.9 246,964 + HMPREF1058_RS18150 0.86 -0.2 246,977 + HMPREF1058_RS18150 0.88 -0.4 247,041 - +1.7 247,058 + -0.3 247,058 + -0.3 247,063 + -0.6 247,063 + -0.3 247,064 - +0.9 247,067 + -0.3 247,067 + -1.5 247,067 + -0.2 247,079 + -1.0 247,202 + HMPREF1058_RS18145 0.18 -0.0 247,220 + HMPREF1058_RS18145 0.20 -0.0 247,231 + HMPREF1058_RS18145 0.21 +0.1 247,250 - HMPREF1058_RS18145 0.24 +0.1 247,265 + HMPREF1058_RS18145 0.26 +0.4 247,269 - HMPREF1058_RS18145 0.26 -0.9
Or see this region's nucleotide sequence