Experiment: Brucella 1x (C) complex media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS16850 and HMPREF1058_RS16845 are separated by 105 nucleotides HMPREF1058_RS16845 and HMPREF1058_RS16840 are separated by 630 nucleotides
HMPREF1058_RS16850: HMPREF1058_RS16850 - HlyC/CorC family transporter, at 578,767 to 580,026
_RS16850
HMPREF1058_RS16845: HMPREF1058_RS16845 - SurA N-terminal domain-containing protein, at 580,132 to 582,264
_RS16845
HMPREF1058_RS16840: HMPREF1058_RS16840 - energy transducer TonB, at 582,895 to 583,980
_RS16840
Position (kb) 580
581
582
583 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 579.222 kb on + strand, within HMPREF1058_RS16850 at 579.224 kb on + strand, within HMPREF1058_RS16850 at 579.227 kb on + strand, within HMPREF1058_RS16850 at 579.232 kb on + strand at 579.233 kb on - strand, within HMPREF1058_RS16850 at 579.317 kb on + strand, within HMPREF1058_RS16850 at 579.318 kb on - strand, within HMPREF1058_RS16850 at 579.408 kb on + strand, within HMPREF1058_RS16850 at 579.409 kb on - strand, within HMPREF1058_RS16850 at 579.456 kb on - strand, within HMPREF1058_RS16850 at 579.465 kb on - strand, within HMPREF1058_RS16850 at 579.508 kb on + strand, within HMPREF1058_RS16850 at 579.509 kb on - strand, within HMPREF1058_RS16850 at 579.533 kb on + strand, within HMPREF1058_RS16850 at 579.534 kb on - strand, within HMPREF1058_RS16850 at 579.534 kb on - strand, within HMPREF1058_RS16850 at 579.538 kb on + strand, within HMPREF1058_RS16850 at 579.538 kb on + strand, within HMPREF1058_RS16850 at 579.539 kb on - strand, within HMPREF1058_RS16850 at 579.540 kb on + strand, within HMPREF1058_RS16850 at 579.674 kb on + strand, within HMPREF1058_RS16850 at 579.675 kb on - strand, within HMPREF1058_RS16850 at 579.675 kb on - strand, within HMPREF1058_RS16850 at 579.696 kb on + strand, within HMPREF1058_RS16850 at 579.775 kb on + strand, within HMPREF1058_RS16850 at 579.780 kb on - strand, within HMPREF1058_RS16850 at 579.805 kb on + strand, within HMPREF1058_RS16850 at 579.805 kb on + strand, within HMPREF1058_RS16850 at 579.806 kb on - strand, within HMPREF1058_RS16850 at 579.880 kb on + strand, within HMPREF1058_RS16850 at 580.004 kb on + strand at 580.048 kb on + strand at 580.049 kb on - strand at 580.071 kb on + strand at 580.409 kb on + strand, within HMPREF1058_RS16845 at 580.421 kb on + strand, within HMPREF1058_RS16845 at 580.558 kb on - strand, within HMPREF1058_RS16845 at 580.628 kb on - strand, within HMPREF1058_RS16845 at 580.628 kb on - strand, within HMPREF1058_RS16845 at 580.861 kb on + strand, within HMPREF1058_RS16845 at 580.862 kb on - strand, within HMPREF1058_RS16845 at 580.915 kb on + strand, within HMPREF1058_RS16845 at 580.926 kb on - strand, within HMPREF1058_RS16845 at 580.926 kb on - strand, within HMPREF1058_RS16845 at 581.080 kb on + strand, within HMPREF1058_RS16845 at 581.093 kb on + strand, within HMPREF1058_RS16845 at 581.094 kb on - strand, within HMPREF1058_RS16845 at 581.131 kb on + strand, within HMPREF1058_RS16845 at 581.141 kb on - strand, within HMPREF1058_RS16845 at 581.143 kb on + strand, within HMPREF1058_RS16845 at 581.166 kb on + strand, within HMPREF1058_RS16845 at 581.231 kb on + strand, within HMPREF1058_RS16845 at 581.234 kb on - strand, within HMPREF1058_RS16845 at 581.369 kb on - strand, within HMPREF1058_RS16845 at 581.385 kb on - strand, within HMPREF1058_RS16845 at 581.405 kb on - strand, within HMPREF1058_RS16845 at 581.512 kb on + strand, within HMPREF1058_RS16845 at 581.514 kb on + strand, within HMPREF1058_RS16845 at 581.572 kb on + strand, within HMPREF1058_RS16845 at 581.839 kb on - strand, within HMPREF1058_RS16845 at 581.903 kb on + strand, within HMPREF1058_RS16845 at 581.903 kb on + strand, within HMPREF1058_RS16845 at 581.980 kb on - strand, within HMPREF1058_RS16845 at 582.002 kb on - strand, within HMPREF1058_RS16845 at 582.035 kb on + strand, within HMPREF1058_RS16845 at 582.043 kb on + strand, within HMPREF1058_RS16845 at 582.071 kb on + strand at 582.103 kb on + strand at 582.120 kb on + strand at 582.177 kb on + strand at 582.199 kb on - strand at 582.256 kb on + strand at 582.269 kb on + strand at 582.272 kb on + strand at 582.273 kb on - strand at 582.274 kb on + strand at 582.274 kb on + strand at 582.276 kb on + strand at 582.276 kb on + strand at 582.283 kb on - strand at 582.284 kb on + strand at 582.395 kb on - strand at 582.503 kb on + strand at 582.505 kb on + strand at 582.505 kb on + strand at 582.505 kb on + strand at 582.512 kb on + strand at 582.517 kb on + strand at 582.518 kb on - strand at 582.565 kb on + strand at 582.575 kb on - strand at 582.639 kb on - strand at 582.639 kb on - strand at 582.640 kb on + strand at 582.660 kb on + strand at 582.697 kb on - strand at 582.726 kb on - strand at 582.830 kb on - strand at 582.879 kb on + strand at 582.886 kb on - strand at 582.886 kb on - strand at 582.887 kb on + strand at 582.887 kb on + strand at 582.888 kb on - strand at 582.888 kb on - strand at 582.888 kb on - strand at 582.888 kb on - strand at 582.889 kb on + strand at 582.889 kb on + strand at 582.892 kb on - strand at 582.935 kb on + strand at 582.968 kb on + strand at 582.998 kb on - strand at 583.079 kb on - strand, within HMPREF1058_RS16840 at 583.079 kb on - strand, within HMPREF1058_RS16840 at 583.079 kb on - strand, within HMPREF1058_RS16840 at 583.079 kb on - strand, within HMPREF1058_RS16840 at 583.162 kb on - strand, within HMPREF1058_RS16840 at 583.206 kb on + strand, within HMPREF1058_RS16840 at 583.207 kb on - strand, within HMPREF1058_RS16840 at 583.207 kb on - strand, within HMPREF1058_RS16840 at 583.207 kb on - strand, within HMPREF1058_RS16840 at 583.256 kb on + strand, within HMPREF1058_RS16840 at 583.261 kb on + strand, within HMPREF1058_RS16840
Per-strain Table
Position Strand Gene LocusTag Fraction Brucella 1x (C) complex media remove 579,222 + HMPREF1058_RS16850 0.36 +1.0 579,224 + HMPREF1058_RS16850 0.36 +0.7 579,227 + HMPREF1058_RS16850 0.37 -0.4 579,232 + -0.8 579,233 - HMPREF1058_RS16850 0.37 +0.1 579,317 + HMPREF1058_RS16850 0.44 +0.2 579,318 - HMPREF1058_RS16850 0.44 +0.7 579,408 + HMPREF1058_RS16850 0.51 -0.6 579,409 - HMPREF1058_RS16850 0.51 +0.4 579,456 - HMPREF1058_RS16850 0.55 -0.8 579,465 - HMPREF1058_RS16850 0.55 -0.6 579,508 + HMPREF1058_RS16850 0.59 +0.2 579,509 - HMPREF1058_RS16850 0.59 +0.3 579,533 + HMPREF1058_RS16850 0.61 +1.0 579,534 - HMPREF1058_RS16850 0.61 +0.2 579,534 - HMPREF1058_RS16850 0.61 +2.1 579,538 + HMPREF1058_RS16850 0.61 +1.6 579,538 + HMPREF1058_RS16850 0.61 +0.2 579,539 - HMPREF1058_RS16850 0.61 -0.0 579,540 + HMPREF1058_RS16850 0.61 -0.6 579,674 + HMPREF1058_RS16850 0.72 +0.2 579,675 - HMPREF1058_RS16850 0.72 -0.3 579,675 - HMPREF1058_RS16850 0.72 -0.7 579,696 + HMPREF1058_RS16850 0.74 +1.3 579,775 + HMPREF1058_RS16850 0.80 +0.4 579,780 - HMPREF1058_RS16850 0.80 -0.8 579,805 + HMPREF1058_RS16850 0.82 -0.7 579,805 + HMPREF1058_RS16850 0.82 -0.7 579,806 - HMPREF1058_RS16850 0.82 +0.0 579,880 + HMPREF1058_RS16850 0.88 +0.6 580,004 + +0.6 580,048 + -1.7 580,049 - -0.1 580,071 + +0.4 580,409 + HMPREF1058_RS16845 0.13 -0.4 580,421 + HMPREF1058_RS16845 0.14 +0.2 580,558 - HMPREF1058_RS16845 0.20 +0.7 580,628 - HMPREF1058_RS16845 0.23 -0.6 580,628 - HMPREF1058_RS16845 0.23 -1.1 580,861 + HMPREF1058_RS16845 0.34 +0.2 580,862 - HMPREF1058_RS16845 0.34 -0.8 580,915 + HMPREF1058_RS16845 0.37 -0.4 580,926 - HMPREF1058_RS16845 0.37 -2.6 580,926 - HMPREF1058_RS16845 0.37 -2.8 581,080 + HMPREF1058_RS16845 0.44 +0.0 581,093 + HMPREF1058_RS16845 0.45 +0.7 581,094 - HMPREF1058_RS16845 0.45 +1.7 581,131 + HMPREF1058_RS16845 0.47 -0.6 581,141 - HMPREF1058_RS16845 0.47 +0.2 581,143 + HMPREF1058_RS16845 0.47 +0.3 581,166 + HMPREF1058_RS16845 0.48 -0.3 581,231 + HMPREF1058_RS16845 0.52 -1.2 581,234 - HMPREF1058_RS16845 0.52 +1.7 581,369 - HMPREF1058_RS16845 0.58 +0.2 581,385 - HMPREF1058_RS16845 0.59 -2.2 581,405 - HMPREF1058_RS16845 0.60 -1.6 581,512 + HMPREF1058_RS16845 0.65 -0.1 581,514 + HMPREF1058_RS16845 0.65 -1.2 581,572 + HMPREF1058_RS16845 0.68 -1.6 581,839 - HMPREF1058_RS16845 0.80 +1.7 581,903 + HMPREF1058_RS16845 0.83 +1.2 581,903 + HMPREF1058_RS16845 0.83 -1.3 581,980 - HMPREF1058_RS16845 0.87 +2.6 582,002 - HMPREF1058_RS16845 0.88 -0.3 582,035 + HMPREF1058_RS16845 0.89 -1.1 582,043 + HMPREF1058_RS16845 0.90 -1.2 582,071 + +0.2 582,103 + +0.3 582,120 + -1.4 582,177 + +0.5 582,199 - -1.1 582,256 + -1.0 582,269 + -3.3 582,272 + -0.3 582,273 - -0.5 582,274 + +0.8 582,274 + +0.8 582,276 + +0.7 582,276 + +0.2 582,283 - +0.1 582,284 + +0.2 582,395 - -0.3 582,503 + +0.4 582,505 + +0.3 582,505 + +0.3 582,505 + -0.4 582,512 + -0.6 582,517 + -0.0 582,518 - +0.7 582,565 + +1.7 582,575 - +1.7 582,639 - +0.0 582,639 - -0.3 582,640 + +1.1 582,660 + +0.9 582,697 - -0.1 582,726 - +0.0 582,830 - +0.3 582,879 + -0.8 582,886 - -0.6 582,886 - -0.1 582,887 + +0.2 582,887 + -0.2 582,888 - +0.8 582,888 - -0.3 582,888 - +0.7 582,888 - -0.1 582,889 + +0.2 582,889 + -0.7 582,892 - +0.3 582,935 + -1.0 582,968 + -0.4 582,998 - +0.7 583,079 - HMPREF1058_RS16840 0.17 +1.7 583,079 - HMPREF1058_RS16840 0.17 -0.6 583,079 - HMPREF1058_RS16840 0.17 -1.6 583,079 - HMPREF1058_RS16840 0.17 -0.1 583,162 - HMPREF1058_RS16840 0.25 +0.6 583,206 + HMPREF1058_RS16840 0.29 -0.1 583,207 - HMPREF1058_RS16840 0.29 +0.3 583,207 - HMPREF1058_RS16840 0.29 +0.5 583,207 - HMPREF1058_RS16840 0.29 +0.4 583,256 + HMPREF1058_RS16840 0.33 +0.1 583,261 + HMPREF1058_RS16840 0.34 -0.7
Or see this region's nucleotide sequence