Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS16150

Experiment: Brucella 1x (C) complex media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS16155 and HMPREF1058_RS16150 overlap by 4 nucleotidesHMPREF1058_RS16150 and HMPREF1058_RS16145 are separated by 228 nucleotides HMPREF1058_RS16155: HMPREF1058_RS16155 - polysaccharide pyruvyl transferase family protein, at 742,741 to 743,916 _RS16155 HMPREF1058_RS16150: HMPREF1058_RS16150 - glycosyltransferase, at 743,913 to 744,956 _RS16150 HMPREF1058_RS16145: HMPREF1058_RS16145 - glycosyl transferase family 32, at 745,185 to 745,952 _RS16145 Position (kb) 743 744 745Strain fitness (log2 ratio) -2 -1 0 1 2at 742.983 kb on - strand, within HMPREF1058_RS16155at 743.112 kb on + strand, within HMPREF1058_RS16155at 743.112 kb on + strand, within HMPREF1058_RS16155at 743.114 kb on + strand, within HMPREF1058_RS16155at 743.114 kb on + strand, within HMPREF1058_RS16155at 743.115 kb on - strand, within HMPREF1058_RS16155at 743.115 kb on - strand, within HMPREF1058_RS16155at 743.115 kb on - strand, within HMPREF1058_RS16155at 743.207 kb on - strand, within HMPREF1058_RS16155at 743.226 kb on + strand, within HMPREF1058_RS16155at 743.330 kb on + strand, within HMPREF1058_RS16155at 743.452 kb on + strand, within HMPREF1058_RS16155at 743.453 kb on - strand, within HMPREF1058_RS16155at 743.453 kb on - strand, within HMPREF1058_RS16155at 743.464 kb on - strandat 743.488 kb on - strand, within HMPREF1058_RS16155at 743.488 kb on - strand, within HMPREF1058_RS16155at 743.493 kb on - strand, within HMPREF1058_RS16155at 743.552 kb on + strand, within HMPREF1058_RS16155at 743.553 kb on - strand, within HMPREF1058_RS16155at 743.566 kb on - strand, within HMPREF1058_RS16155at 743.566 kb on - strand, within HMPREF1058_RS16155at 743.594 kb on + strand, within HMPREF1058_RS16155at 743.595 kb on - strand, within HMPREF1058_RS16155at 743.647 kb on + strand, within HMPREF1058_RS16155at 743.654 kb on - strand, within HMPREF1058_RS16155at 743.689 kb on - strand, within HMPREF1058_RS16155at 743.691 kb on - strand, within HMPREF1058_RS16155at 743.691 kb on - strand, within HMPREF1058_RS16155at 743.705 kb on - strand, within HMPREF1058_RS16155at 743.714 kb on - strand, within HMPREF1058_RS16155at 743.755 kb on - strand, within HMPREF1058_RS16155at 743.755 kb on - strand, within HMPREF1058_RS16155at 743.756 kb on + strand, within HMPREF1058_RS16155at 743.797 kb on - strand, within HMPREF1058_RS16155at 743.819 kb on - strandat 743.853 kb on - strandat 743.865 kb on + strandat 743.949 kb on + strandat 744.029 kb on - strand, within HMPREF1058_RS16150at 744.055 kb on - strand, within HMPREF1058_RS16150at 744.237 kb on + strand, within HMPREF1058_RS16150at 744.251 kb on + strand, within HMPREF1058_RS16150at 744.251 kb on + strand, within HMPREF1058_RS16150at 744.252 kb on - strand, within HMPREF1058_RS16150at 744.253 kb on + strand, within HMPREF1058_RS16150at 744.299 kb on - strand, within HMPREF1058_RS16150at 744.337 kb on + strand, within HMPREF1058_RS16150at 744.369 kb on + strand, within HMPREF1058_RS16150at 744.401 kb on + strand, within HMPREF1058_RS16150at 744.402 kb on - strand, within HMPREF1058_RS16150at 744.408 kb on + strand, within HMPREF1058_RS16150at 744.409 kb on - strand, within HMPREF1058_RS16150at 744.425 kb on - strand, within HMPREF1058_RS16150at 744.434 kb on + strand, within HMPREF1058_RS16150at 744.451 kb on + strand, within HMPREF1058_RS16150at 744.451 kb on + strand, within HMPREF1058_RS16150at 744.486 kb on + strand, within HMPREF1058_RS16150at 744.486 kb on + strand, within HMPREF1058_RS16150at 744.486 kb on + strand, within HMPREF1058_RS16150at 744.491 kb on + strand, within HMPREF1058_RS16150at 744.491 kb on + strand, within HMPREF1058_RS16150at 744.499 kb on - strand, within HMPREF1058_RS16150at 744.562 kb on - strand, within HMPREF1058_RS16150at 744.584 kb on - strand, within HMPREF1058_RS16150at 744.604 kb on - strand, within HMPREF1058_RS16150at 744.604 kb on - strand, within HMPREF1058_RS16150at 744.604 kb on - strand, within HMPREF1058_RS16150at 744.604 kb on - strand, within HMPREF1058_RS16150at 744.649 kb on + strand, within HMPREF1058_RS16150at 744.649 kb on + strand, within HMPREF1058_RS16150at 744.650 kb on - strand, within HMPREF1058_RS16150at 744.791 kb on - strand, within HMPREF1058_RS16150at 744.841 kb on - strand, within HMPREF1058_RS16150at 744.859 kb on - strandat 744.882 kb on + strandat 744.882 kb on + strandat 744.882 kb on + strandat 744.883 kb on - strandat 744.890 kb on + strandat 744.891 kb on - strandat 744.913 kb on + strandat 744.976 kb on - strandat 744.980 kb on - strandat 744.986 kb on + strandat 745.050 kb on + strandat 745.051 kb on - strandat 745.057 kb on - strandat 745.068 kb on + strandat 745.125 kb on + strandat 745.125 kb on + strandat 745.175 kb on + strandat 745.238 kb on + strandat 745.288 kb on + strand, within HMPREF1058_RS16145at 745.328 kb on - strand, within HMPREF1058_RS16145at 745.328 kb on - strand, within HMPREF1058_RS16145at 745.350 kb on + strand, within HMPREF1058_RS16145at 745.449 kb on - strand, within HMPREF1058_RS16145at 745.476 kb on + strand, within HMPREF1058_RS16145at 745.477 kb on - strand, within HMPREF1058_RS16145at 745.579 kb on - strand, within HMPREF1058_RS16145at 745.640 kb on - strand, within HMPREF1058_RS16145at 745.640 kb on - strand, within HMPREF1058_RS16145at 745.679 kb on + strand, within HMPREF1058_RS16145at 745.742 kb on - strand, within HMPREF1058_RS16145at 745.752 kb on - strand, within HMPREF1058_RS16145at 745.753 kb on + strand, within HMPREF1058_RS16145at 745.865 kb on - strandat 745.883 kb on + strandat 745.885 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Brucella 1x (C) complex media
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742,983 - HMPREF1058_RS16155 0.21 +1.2
743,112 + HMPREF1058_RS16155 0.32 +0.3
743,112 + HMPREF1058_RS16155 0.32 +0.3
743,114 + HMPREF1058_RS16155 0.32 +0.7
743,114 + HMPREF1058_RS16155 0.32 -0.4
743,115 - HMPREF1058_RS16155 0.32 +0.3
743,115 - HMPREF1058_RS16155 0.32 +0.7
743,115 - HMPREF1058_RS16155 0.32 +1.3
743,207 - HMPREF1058_RS16155 0.40 -0.7
743,226 + HMPREF1058_RS16155 0.41 -0.1
743,330 + HMPREF1058_RS16155 0.50 -2.7
743,452 + HMPREF1058_RS16155 0.60 +0.4
743,453 - HMPREF1058_RS16155 0.61 -0.9
743,453 - HMPREF1058_RS16155 0.61 -0.7
743,464 - +0.7
743,488 - HMPREF1058_RS16155 0.64 +0.2
743,488 - HMPREF1058_RS16155 0.64 +0.5
743,493 - HMPREF1058_RS16155 0.64 +0.1
743,552 + HMPREF1058_RS16155 0.69 -0.2
743,553 - HMPREF1058_RS16155 0.69 -0.2
743,566 - HMPREF1058_RS16155 0.70 -1.9
743,566 - HMPREF1058_RS16155 0.70 -1.4
743,594 + HMPREF1058_RS16155 0.73 -2.4
743,595 - HMPREF1058_RS16155 0.73 +0.3
743,647 + HMPREF1058_RS16155 0.77 -0.6
743,654 - HMPREF1058_RS16155 0.78 +1.1
743,689 - HMPREF1058_RS16155 0.81 -0.1
743,691 - HMPREF1058_RS16155 0.81 +0.1
743,691 - HMPREF1058_RS16155 0.81 -0.4
743,705 - HMPREF1058_RS16155 0.82 -0.3
743,714 - HMPREF1058_RS16155 0.83 -0.6
743,755 - HMPREF1058_RS16155 0.86 -1.1
743,755 - HMPREF1058_RS16155 0.86 -1.1
743,756 + HMPREF1058_RS16155 0.86 +1.7
743,797 - HMPREF1058_RS16155 0.90 -1.1
743,819 - -0.5
743,853 - -0.8
743,865 + -0.0
743,949 + -0.5
744,029 - HMPREF1058_RS16150 0.11 -0.3
744,055 - HMPREF1058_RS16150 0.14 -1.2
744,237 + HMPREF1058_RS16150 0.31 -1.6
744,251 + HMPREF1058_RS16150 0.32 -0.1
744,251 + HMPREF1058_RS16150 0.32 +0.3
744,252 - HMPREF1058_RS16150 0.32 -0.3
744,253 + HMPREF1058_RS16150 0.33 -0.8
744,299 - HMPREF1058_RS16150 0.37 -0.8
744,337 + HMPREF1058_RS16150 0.41 -0.2
744,369 + HMPREF1058_RS16150 0.44 +0.3
744,401 + HMPREF1058_RS16150 0.47 -1.2
744,402 - HMPREF1058_RS16150 0.47 -0.2
744,408 + HMPREF1058_RS16150 0.47 -0.7
744,409 - HMPREF1058_RS16150 0.48 -1.3
744,425 - HMPREF1058_RS16150 0.49 -1.7
744,434 + HMPREF1058_RS16150 0.50 -2.4
744,451 + HMPREF1058_RS16150 0.52 +0.7
744,451 + HMPREF1058_RS16150 0.52 -1.6
744,486 + HMPREF1058_RS16150 0.55 -0.8
744,486 + HMPREF1058_RS16150 0.55 -0.6
744,486 + HMPREF1058_RS16150 0.55 -0.4
744,491 + HMPREF1058_RS16150 0.55 +0.6
744,491 + HMPREF1058_RS16150 0.55 -0.5
744,499 - HMPREF1058_RS16150 0.56 -2.0
744,562 - HMPREF1058_RS16150 0.62 -0.3
744,584 - HMPREF1058_RS16150 0.64 -1.3
744,604 - HMPREF1058_RS16150 0.66 +0.2
744,604 - HMPREF1058_RS16150 0.66 -2.4
744,604 - HMPREF1058_RS16150 0.66 -0.3
744,604 - HMPREF1058_RS16150 0.66 -1.5
744,649 + HMPREF1058_RS16150 0.70 +1.0
744,649 + HMPREF1058_RS16150 0.70 +0.2
744,650 - HMPREF1058_RS16150 0.71 +1.0
744,791 - HMPREF1058_RS16150 0.84 -1.2
744,841 - HMPREF1058_RS16150 0.89 +0.1
744,859 - +0.7
744,882 + -0.3
744,882 + -0.1
744,882 + +1.2
744,883 - -1.7
744,890 + -1.2
744,891 - -1.3
744,913 + +0.5
744,976 - -1.1
744,980 - -1.1
744,986 + +0.7
745,050 + +0.0
745,051 - -1.5
745,057 - -0.2
745,068 + -0.1
745,125 + +0.0
745,125 + -0.7
745,175 + -1.6
745,238 + -0.2
745,288 + HMPREF1058_RS16145 0.13 +1.0
745,328 - HMPREF1058_RS16145 0.19 -0.8
745,328 - HMPREF1058_RS16145 0.19 +1.0
745,350 + HMPREF1058_RS16145 0.21 +1.4
745,449 - HMPREF1058_RS16145 0.34 -0.3
745,476 + HMPREF1058_RS16145 0.38 -1.1
745,477 - HMPREF1058_RS16145 0.38 +0.1
745,579 - HMPREF1058_RS16145 0.51 +2.7
745,640 - HMPREF1058_RS16145 0.59 -0.4
745,640 - HMPREF1058_RS16145 0.59 -0.2
745,679 + HMPREF1058_RS16145 0.64 -0.2
745,742 - HMPREF1058_RS16145 0.73 -0.1
745,752 - HMPREF1058_RS16145 0.74 -0.8
745,753 + HMPREF1058_RS16145 0.74 -1.5
745,865 - -1.1
745,883 + +1.7
745,885 + +0.7

Or see this region's nucleotide sequence