Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS12775

Experiment: Brucella 1x (C) complex media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS12780 and HMPREF1058_RS12775 are separated by 5 nucleotidesHMPREF1058_RS12775 and HMPREF1058_RS12770 are separated by 106 nucleotidesHMPREF1058_RS12770 and HMPREF1058_RS12765 are separated by 7 nucleotides HMPREF1058_RS12780: HMPREF1058_RS12780 - M20 family metallo-hydrolase, at 34,300 to 35,364 _RS12780 HMPREF1058_RS12775: HMPREF1058_RS12775 - hypothetical protein, at 35,370 to 35,699 _RS12775 HMPREF1058_RS12770: HMPREF1058_RS12770 - polysaccharide biosynthesis protein, at 35,806 to 36,648 _RS12770 HMPREF1058_RS12765: HMPREF1058_RS12765 - NUDIX domain-containing protein, at 36,656 to 37,546 _RS12765 Position (kb) 35 36Strain fitness (log2 ratio) -2 -1 0 1 2 3at 34.411 kb on + strand, within HMPREF1058_RS12780at 34.411 kb on + strand, within HMPREF1058_RS12780at 34.411 kb on + strand, within HMPREF1058_RS12780at 34.411 kb on + strandat 34.411 kb on + strand, within HMPREF1058_RS12780at 34.412 kb on - strand, within HMPREF1058_RS12780at 34.429 kb on - strand, within HMPREF1058_RS12780at 34.623 kb on - strand, within HMPREF1058_RS12780at 34.623 kb on - strand, within HMPREF1058_RS12780at 34.625 kb on + strand, within HMPREF1058_RS12780at 34.632 kb on - strand, within HMPREF1058_RS12780at 34.657 kb on - strand, within HMPREF1058_RS12780at 34.672 kb on + strand, within HMPREF1058_RS12780at 34.727 kb on + strand, within HMPREF1058_RS12780at 34.727 kb on + strand, within HMPREF1058_RS12780at 34.748 kb on + strand, within HMPREF1058_RS12780at 34.884 kb on + strand, within HMPREF1058_RS12780at 34.983 kb on - strand, within HMPREF1058_RS12780at 35.017 kb on - strand, within HMPREF1058_RS12780at 35.056 kb on + strand, within HMPREF1058_RS12780at 35.057 kb on - strand, within HMPREF1058_RS12780at 35.184 kb on - strand, within HMPREF1058_RS12780at 35.208 kb on + strand, within HMPREF1058_RS12780at 35.209 kb on - strand, within HMPREF1058_RS12780at 35.293 kb on + strandat 35.295 kb on + strandat 35.332 kb on + strandat 35.333 kb on - strandat 35.333 kb on - strandat 35.372 kb on - strandat 35.394 kb on - strandat 35.418 kb on + strand, within HMPREF1058_RS12775at 35.477 kb on + strand, within HMPREF1058_RS12775at 35.478 kb on - strand, within HMPREF1058_RS12775at 35.585 kb on + strand, within HMPREF1058_RS12775at 35.671 kb on + strandat 35.671 kb on + strandat 35.671 kb on + strandat 35.672 kb on - strandat 35.676 kb on - strandat 35.700 kb on - strandat 35.722 kb on + strandat 35.741 kb on - strandat 35.781 kb on - strandat 35.785 kb on - strandat 35.788 kb on + strandat 35.789 kb on - strandat 35.812 kb on - strandat 35.822 kb on - strandat 35.832 kb on + strandat 36.050 kb on - strand, within HMPREF1058_RS12770at 36.069 kb on + strand, within HMPREF1058_RS12770at 36.100 kb on + strand, within HMPREF1058_RS12770at 36.156 kb on + strand, within HMPREF1058_RS12770at 36.166 kb on + strand, within HMPREF1058_RS12770at 36.189 kb on + strand, within HMPREF1058_RS12770at 36.189 kb on + strand, within HMPREF1058_RS12770at 36.190 kb on - strand, within HMPREF1058_RS12770at 36.190 kb on - strand, within HMPREF1058_RS12770at 36.190 kb on - strand, within HMPREF1058_RS12770at 36.253 kb on - strand, within HMPREF1058_RS12770at 36.309 kb on + strand, within HMPREF1058_RS12770at 36.316 kb on + strand, within HMPREF1058_RS12770at 36.366 kb on + strand, within HMPREF1058_RS12770at 36.418 kb on - strand, within HMPREF1058_RS12770at 36.477 kb on - strand, within HMPREF1058_RS12770at 36.570 kb on + strandat 36.570 kb on + strandat 36.694 kb on - strandat 36.694 kb on - strandat 36.694 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Brucella 1x (C) complex media
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34,411 + HMPREF1058_RS12780 0.10 +0.1
34,411 + HMPREF1058_RS12780 0.10 +0.1
34,411 + HMPREF1058_RS12780 0.10 -0.4
34,411 + -0.5
34,411 + HMPREF1058_RS12780 0.10 -0.0
34,412 - HMPREF1058_RS12780 0.11 -0.6
34,429 - HMPREF1058_RS12780 0.12 +0.2
34,623 - HMPREF1058_RS12780 0.30 +1.5
34,623 - HMPREF1058_RS12780 0.30 -0.3
34,625 + HMPREF1058_RS12780 0.31 -0.1
34,632 - HMPREF1058_RS12780 0.31 -1.6
34,657 - HMPREF1058_RS12780 0.34 -0.1
34,672 + HMPREF1058_RS12780 0.35 -0.8
34,727 + HMPREF1058_RS12780 0.40 -1.8
34,727 + HMPREF1058_RS12780 0.40 +0.4
34,748 + HMPREF1058_RS12780 0.42 -0.6
34,884 + HMPREF1058_RS12780 0.55 -0.7
34,983 - HMPREF1058_RS12780 0.64 -0.1
35,017 - HMPREF1058_RS12780 0.67 +0.8
35,056 + HMPREF1058_RS12780 0.71 -0.2
35,057 - HMPREF1058_RS12780 0.71 -0.2
35,184 - HMPREF1058_RS12780 0.83 -1.1
35,208 + HMPREF1058_RS12780 0.85 -0.1
35,209 - HMPREF1058_RS12780 0.85 +0.8
35,293 + +0.5
35,295 + -0.6
35,332 + +3.2
35,333 - +0.3
35,333 - -0.5
35,372 - -0.5
35,394 - +0.6
35,418 + HMPREF1058_RS12775 0.15 -1.6
35,477 + HMPREF1058_RS12775 0.32 -0.9
35,478 - HMPREF1058_RS12775 0.33 -0.3
35,585 + HMPREF1058_RS12775 0.65 -1.3
35,671 + +0.2
35,671 + +0.3
35,671 + -0.8
35,672 - -0.3
35,676 - +0.7
35,700 - +0.7
35,722 + -0.2
35,741 - +0.8
35,781 - -0.5
35,785 - +1.1
35,788 + +0.2
35,789 - +0.7
35,812 - +2.5
35,822 - -0.0
35,832 + +0.2
36,050 - HMPREF1058_RS12770 0.29 -0.3
36,069 + HMPREF1058_RS12770 0.31 -1.2
36,100 + HMPREF1058_RS12770 0.35 -1.0
36,156 + HMPREF1058_RS12770 0.42 +0.0
36,166 + HMPREF1058_RS12770 0.43 +0.5
36,189 + HMPREF1058_RS12770 0.45 -0.1
36,189 + HMPREF1058_RS12770 0.45 +0.0
36,190 - HMPREF1058_RS12770 0.46 -0.9
36,190 - HMPREF1058_RS12770 0.46 +1.4
36,190 - HMPREF1058_RS12770 0.46 -0.4
36,253 - HMPREF1058_RS12770 0.53 +0.1
36,309 + HMPREF1058_RS12770 0.60 -1.1
36,316 + HMPREF1058_RS12770 0.60 -0.2
36,366 + HMPREF1058_RS12770 0.66 -1.5
36,418 - HMPREF1058_RS12770 0.73 +0.0
36,477 - HMPREF1058_RS12770 0.80 -0.6
36,570 + -0.1
36,570 + +0.1
36,694 - +0.3
36,694 - -0.5
36,694 - +1.0

Or see this region's nucleotide sequence