Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS11815

Experiment: Brucella 1x (C) complex media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS11820 and HMPREF1058_RS11815 overlap by 1 nucleotidesHMPREF1058_RS11815 and HMPREF1058_RS11810 are separated by 3 nucleotides HMPREF1058_RS11820: HMPREF1058_RS11820 - 4Fe-4S binding protein, at 276,402 to 277,181 _RS11820 HMPREF1058_RS11815: HMPREF1058_RS11815 - tRNA 2-thiouridine(34) synthase MnmA, at 277,181 to 278,308 _RS11815 HMPREF1058_RS11810: HMPREF1058_RS11810 - aminopeptidase N, at 278,312 to 280,834 _RS11810 Position (kb) 277 278 279Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 276.354 kb on - strandat 276.354 kb on - strandat 276.357 kb on + strandat 276.361 kb on + strandat 276.362 kb on - strandat 276.362 kb on - strandat 276.390 kb on - strandat 276.411 kb on + strandat 276.449 kb on + strandat 276.449 kb on + strandat 276.449 kb on + strandat 276.449 kb on + strandat 276.450 kb on - strandat 276.450 kb on - strandat 276.491 kb on + strand, within HMPREF1058_RS11820at 276.511 kb on + strand, within HMPREF1058_RS11820at 276.511 kb on + strand, within HMPREF1058_RS11820at 276.512 kb on - strand, within HMPREF1058_RS11820at 276.512 kb on - strand, within HMPREF1058_RS11820at 276.537 kb on - strand, within HMPREF1058_RS11820at 276.561 kb on - strand, within HMPREF1058_RS11820at 276.585 kb on + strand, within HMPREF1058_RS11820at 276.667 kb on + strand, within HMPREF1058_RS11820at 276.667 kb on + strand, within HMPREF1058_RS11820at 276.668 kb on - strand, within HMPREF1058_RS11820at 276.720 kb on - strand, within HMPREF1058_RS11820at 276.774 kb on + strand, within HMPREF1058_RS11820at 276.788 kb on + strand, within HMPREF1058_RS11820at 276.913 kb on + strand, within HMPREF1058_RS11820at 276.913 kb on + strand, within HMPREF1058_RS11820at 276.913 kb on + strand, within HMPREF1058_RS11820at 276.914 kb on - strand, within HMPREF1058_RS11820at 276.914 kb on - strand, within HMPREF1058_RS11820at 276.997 kb on + strand, within HMPREF1058_RS11820at 277.039 kb on + strand, within HMPREF1058_RS11820at 277.081 kb on + strand, within HMPREF1058_RS11820at 277.135 kb on + strandat 277.177 kb on + strandat 277.178 kb on - strandat 277.178 kb on - strandat 277.209 kb on + strandat 277.268 kb on + strandat 277.350 kb on + strand, within HMPREF1058_RS11815at 277.387 kb on - strand, within HMPREF1058_RS11815at 277.387 kb on - strand, within HMPREF1058_RS11815at 277.398 kb on + strand, within HMPREF1058_RS11815at 277.430 kb on - strand, within HMPREF1058_RS11815at 277.446 kb on + strand, within HMPREF1058_RS11815at 277.455 kb on - strand, within HMPREF1058_RS11815at 277.553 kb on - strand, within HMPREF1058_RS11815at 277.603 kb on + strand, within HMPREF1058_RS11815at 277.606 kb on - strand, within HMPREF1058_RS11815at 277.606 kb on - strand, within HMPREF1058_RS11815at 277.606 kb on - strand, within HMPREF1058_RS11815at 277.606 kb on - strand, within HMPREF1058_RS11815at 277.648 kb on - strand, within HMPREF1058_RS11815at 277.725 kb on - strand, within HMPREF1058_RS11815at 277.788 kb on + strand, within HMPREF1058_RS11815at 277.788 kb on + strand, within HMPREF1058_RS11815at 277.789 kb on - strand, within HMPREF1058_RS11815at 277.867 kb on + strand, within HMPREF1058_RS11815at 277.911 kb on - strand, within HMPREF1058_RS11815at 277.912 kb on + strand, within HMPREF1058_RS11815at 277.913 kb on - strand, within HMPREF1058_RS11815at 277.913 kb on - strand, within HMPREF1058_RS11815at 277.913 kb on - strand, within HMPREF1058_RS11815at 277.917 kb on + strand, within HMPREF1058_RS11815at 277.917 kb on + strand, within HMPREF1058_RS11815at 277.961 kb on + strand, within HMPREF1058_RS11815at 277.961 kb on + strand, within HMPREF1058_RS11815at 277.961 kb on + strand, within HMPREF1058_RS11815at 277.962 kb on - strand, within HMPREF1058_RS11815at 277.966 kb on - strand, within HMPREF1058_RS11815at 277.966 kb on - strand, within HMPREF1058_RS11815at 278.030 kb on + strand, within HMPREF1058_RS11815at 278.030 kb on + strand, within HMPREF1058_RS11815at 278.032 kb on + strand, within HMPREF1058_RS11815at 278.033 kb on - strand, within HMPREF1058_RS11815at 278.033 kb on - strand, within HMPREF1058_RS11815at 278.040 kb on + strand, within HMPREF1058_RS11815at 278.040 kb on + strand, within HMPREF1058_RS11815at 278.048 kb on + strand, within HMPREF1058_RS11815at 278.049 kb on - strand, within HMPREF1058_RS11815at 278.073 kb on + strand, within HMPREF1058_RS11815at 278.160 kb on + strand, within HMPREF1058_RS11815at 278.300 kb on - strandat 278.321 kb on + strandat 278.321 kb on + strandat 278.324 kb on - strandat 278.353 kb on - strandat 278.356 kb on - strandat 278.356 kb on - strandat 278.356 kb on - strandat 278.358 kb on + strandat 278.358 kb on + strandat 278.359 kb on - strandat 278.460 kb on - strandat 278.467 kb on - strandat 278.467 kb on - strandat 278.469 kb on - strandat 278.552 kb on - strandat 278.661 kb on + strand, within HMPREF1058_RS11810at 278.664 kb on + strand, within HMPREF1058_RS11810at 278.681 kb on - strand, within HMPREF1058_RS11810at 278.748 kb on + strand, within HMPREF1058_RS11810at 278.830 kb on - strand, within HMPREF1058_RS11810at 278.830 kb on - strand, within HMPREF1058_RS11810at 278.830 kb on - strand, within HMPREF1058_RS11810at 278.830 kb on - strand, within HMPREF1058_RS11810at 278.861 kb on + strand, within HMPREF1058_RS11810at 278.861 kb on + strand, within HMPREF1058_RS11810at 278.861 kb on + strand, within HMPREF1058_RS11810at 278.861 kb on + strand, within HMPREF1058_RS11810at 278.862 kb on - strand, within HMPREF1058_RS11810at 278.862 kb on - strand, within HMPREF1058_RS11810at 278.863 kb on + strand, within HMPREF1058_RS11810at 278.864 kb on - strand, within HMPREF1058_RS11810at 278.867 kb on - strand, within HMPREF1058_RS11810at 278.961 kb on + strand, within HMPREF1058_RS11810at 278.961 kb on + strand, within HMPREF1058_RS11810at 278.976 kb on - strand, within HMPREF1058_RS11810at 278.978 kb on - strand, within HMPREF1058_RS11810at 278.979 kb on + strand, within HMPREF1058_RS11810at 278.980 kb on - strand, within HMPREF1058_RS11810at 279.043 kb on - strand, within HMPREF1058_RS11810at 279.043 kb on - strand, within HMPREF1058_RS11810at 279.046 kb on + strand, within HMPREF1058_RS11810at 279.094 kb on + strand, within HMPREF1058_RS11810at 279.094 kb on + strand, within HMPREF1058_RS11810at 279.094 kb on + strand, within HMPREF1058_RS11810at 279.130 kb on + strand, within HMPREF1058_RS11810at 279.134 kb on - strand, within HMPREF1058_RS11810at 279.161 kb on - strand, within HMPREF1058_RS11810at 279.184 kb on - strand, within HMPREF1058_RS11810at 279.185 kb on + strand, within HMPREF1058_RS11810at 279.185 kb on + strand, within HMPREF1058_RS11810at 279.186 kb on - strand, within HMPREF1058_RS11810at 279.188 kb on - strand, within HMPREF1058_RS11810at 279.291 kb on + strand, within HMPREF1058_RS11810

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Per-strain Table

Position Strand Gene LocusTag Fraction Brucella 1x (C) complex media
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276,354 - -2.2
276,354 - -0.6
276,357 + -0.0
276,361 + -0.2
276,362 - +0.8
276,362 - -0.4
276,390 - -1.4
276,411 + -1.0
276,449 + +0.8
276,449 + +1.5
276,449 + -0.2
276,449 + +0.6
276,450 - -2.1
276,450 - -0.8
276,491 + HMPREF1058_RS11820 0.11 -0.6
276,511 + HMPREF1058_RS11820 0.14 -0.2
276,511 + HMPREF1058_RS11820 0.14 -0.6
276,512 - HMPREF1058_RS11820 0.14 +0.5
276,512 - HMPREF1058_RS11820 0.14 -0.9
276,537 - HMPREF1058_RS11820 0.17 -0.5
276,561 - HMPREF1058_RS11820 0.20 -0.5
276,585 + HMPREF1058_RS11820 0.23 +0.2
276,667 + HMPREF1058_RS11820 0.34 -1.7
276,667 + HMPREF1058_RS11820 0.34 -0.8
276,668 - HMPREF1058_RS11820 0.34 +0.2
276,720 - HMPREF1058_RS11820 0.41 +0.4
276,774 + HMPREF1058_RS11820 0.48 +0.1
276,788 + HMPREF1058_RS11820 0.49 -0.3
276,913 + HMPREF1058_RS11820 0.66 -0.7
276,913 + HMPREF1058_RS11820 0.66 +0.3
276,913 + HMPREF1058_RS11820 0.66 -0.2
276,914 - HMPREF1058_RS11820 0.66 -1.4
276,914 - HMPREF1058_RS11820 0.66 +1.0
276,997 + HMPREF1058_RS11820 0.76 +0.6
277,039 + HMPREF1058_RS11820 0.82 -0.2
277,081 + HMPREF1058_RS11820 0.87 -0.1
277,135 + -0.1
277,177 + -1.3
277,178 - +0.2
277,178 - -2.1
277,209 + -1.2
277,268 + -0.4
277,350 + HMPREF1058_RS11815 0.15 -1.1
277,387 - HMPREF1058_RS11815 0.18 -1.1
277,387 - HMPREF1058_RS11815 0.18 -1.3
277,398 + HMPREF1058_RS11815 0.19 +0.2
277,430 - HMPREF1058_RS11815 0.22 +0.3
277,446 + HMPREF1058_RS11815 0.23 +0.3
277,455 - HMPREF1058_RS11815 0.24 -0.8
277,553 - HMPREF1058_RS11815 0.33 -0.6
277,603 + HMPREF1058_RS11815 0.37 -1.1
277,606 - HMPREF1058_RS11815 0.38 -1.2
277,606 - HMPREF1058_RS11815 0.38 -1.4
277,606 - HMPREF1058_RS11815 0.38 +0.2
277,606 - HMPREF1058_RS11815 0.38 -0.8
277,648 - HMPREF1058_RS11815 0.41 -0.5
277,725 - HMPREF1058_RS11815 0.48 -1.7
277,788 + HMPREF1058_RS11815 0.54 -0.9
277,788 + HMPREF1058_RS11815 0.54 +1.0
277,789 - HMPREF1058_RS11815 0.54 -0.4
277,867 + HMPREF1058_RS11815 0.61 -0.4
277,911 - HMPREF1058_RS11815 0.65 +0.8
277,912 + HMPREF1058_RS11815 0.65 -0.3
277,913 - HMPREF1058_RS11815 0.65 -0.2
277,913 - HMPREF1058_RS11815 0.65 -2.1
277,913 - HMPREF1058_RS11815 0.65 +0.8
277,917 + HMPREF1058_RS11815 0.65 -0.2
277,917 + HMPREF1058_RS11815 0.65 +0.8
277,961 + HMPREF1058_RS11815 0.69 -0.9
277,961 + HMPREF1058_RS11815 0.69 -0.5
277,961 + HMPREF1058_RS11815 0.69 -0.3
277,962 - HMPREF1058_RS11815 0.69 -1.4
277,966 - HMPREF1058_RS11815 0.70 -1.5
277,966 - HMPREF1058_RS11815 0.70 -0.7
278,030 + HMPREF1058_RS11815 0.75 -0.2
278,030 + HMPREF1058_RS11815 0.75 -0.8
278,032 + HMPREF1058_RS11815 0.75 -1.2
278,033 - HMPREF1058_RS11815 0.76 -0.2
278,033 - HMPREF1058_RS11815 0.76 -2.5
278,040 + HMPREF1058_RS11815 0.76 +1.8
278,040 + HMPREF1058_RS11815 0.76 -1.9
278,048 + HMPREF1058_RS11815 0.77 -0.4
278,049 - HMPREF1058_RS11815 0.77 -2.6
278,073 + HMPREF1058_RS11815 0.79 +0.3
278,160 + HMPREF1058_RS11815 0.87 -4.4
278,300 - +0.2
278,321 + +0.3
278,321 + +1.0
278,324 - -2.1
278,353 - -0.4
278,356 - +0.3
278,356 - -0.4
278,356 - +1.5
278,358 + +0.0
278,358 + -0.1
278,359 - +0.0
278,460 - -0.3
278,467 - -0.4
278,467 - +1.2
278,469 - -0.6
278,552 - +0.4
278,661 + HMPREF1058_RS11810 0.14 +1.3
278,664 + HMPREF1058_RS11810 0.14 -0.6
278,681 - HMPREF1058_RS11810 0.15 -0.0
278,748 + HMPREF1058_RS11810 0.17 -0.6
278,830 - HMPREF1058_RS11810 0.21 -0.7
278,830 - HMPREF1058_RS11810 0.21 +1.0
278,830 - HMPREF1058_RS11810 0.21 +0.7
278,830 - HMPREF1058_RS11810 0.21 +1.1
278,861 + HMPREF1058_RS11810 0.22 +0.0
278,861 + HMPREF1058_RS11810 0.22 +0.8
278,861 + HMPREF1058_RS11810 0.22 +0.4
278,861 + HMPREF1058_RS11810 0.22 -0.4
278,862 - HMPREF1058_RS11810 0.22 +0.9
278,862 - HMPREF1058_RS11810 0.22 +0.2
278,863 + HMPREF1058_RS11810 0.22 +0.7
278,864 - HMPREF1058_RS11810 0.22 +0.7
278,867 - HMPREF1058_RS11810 0.22 -0.4
278,961 + HMPREF1058_RS11810 0.26 -0.3
278,961 + HMPREF1058_RS11810 0.26 +0.8
278,976 - HMPREF1058_RS11810 0.26 -0.7
278,978 - HMPREF1058_RS11810 0.26 +1.1
278,979 + HMPREF1058_RS11810 0.26 +0.2
278,980 - HMPREF1058_RS11810 0.26 -0.4
279,043 - HMPREF1058_RS11810 0.29 +0.1
279,043 - HMPREF1058_RS11810 0.29 -0.1
279,046 + HMPREF1058_RS11810 0.29 -0.3
279,094 + HMPREF1058_RS11810 0.31 -0.8
279,094 + HMPREF1058_RS11810 0.31 +1.1
279,094 + HMPREF1058_RS11810 0.31 -1.8
279,130 + HMPREF1058_RS11810 0.32 +1.2
279,134 - HMPREF1058_RS11810 0.33 -0.0
279,161 - HMPREF1058_RS11810 0.34 -0.9
279,184 - HMPREF1058_RS11810 0.35 -0.0
279,185 + HMPREF1058_RS11810 0.35 -0.2
279,185 + HMPREF1058_RS11810 0.35 +0.1
279,186 - HMPREF1058_RS11810 0.35 +0.4
279,188 - HMPREF1058_RS11810 0.35 +2.0
279,291 + HMPREF1058_RS11810 0.39 -0.4

Or see this region's nucleotide sequence