Experiment: Brucella 1x (C) complex media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS11505 and HMPREF1058_RS11500 are separated by 91 nucleotides HMPREF1058_RS11500 and HMPREF1058_RS11495 are separated by 309 nucleotides HMPREF1058_RS11495 and HMPREF1058_RS11490 are separated by 201 nucleotides
HMPREF1058_RS11505: HMPREF1058_RS11505 - polyprenyl synthetase family protein, at 362,436 to 363,410
_RS11505
HMPREF1058_RS11500: HMPREF1058_RS11500 - DNA polymerase I, at 363,502 to 366,417
_RS11500
HMPREF1058_RS11495: HMPREF1058_RS11495 - DUF3836 domain-containing protein, at 366,727 to 367,113
_RS11495
HMPREF1058_RS11490: HMPREF1058_RS11490 - redox-regulated ATPase YchF, at 367,315 to 368,418
_RS11490
Position (kb) 363
364
365
366
367 Strain fitness (log2 ratio) -2
-1
0
1 at 363.441 kb on - strand at 364.802 kb on + strand, within HMPREF1058_RS11500 at 364.897 kb on + strand, within HMPREF1058_RS11500 at 364.976 kb on + strand, within HMPREF1058_RS11500 at 365.213 kb on + strand, within HMPREF1058_RS11500 at 365.242 kb on + strand, within HMPREF1058_RS11500 at 365.242 kb on + strand, within HMPREF1058_RS11500 at 365.243 kb on - strand, within HMPREF1058_RS11500 at 365.243 kb on - strand, within HMPREF1058_RS11500 at 365.244 kb on + strand, within HMPREF1058_RS11500 at 365.261 kb on + strand, within HMPREF1058_RS11500 at 365.262 kb on - strand, within HMPREF1058_RS11500 at 365.324 kb on + strand, within HMPREF1058_RS11500 at 365.449 kb on + strand, within HMPREF1058_RS11500 at 365.501 kb on + strand, within HMPREF1058_RS11500 at 365.549 kb on - strand, within HMPREF1058_RS11500 at 365.549 kb on - strand, within HMPREF1058_RS11500 at 365.549 kb on - strand, within HMPREF1058_RS11500 at 365.550 kb on + strand, within HMPREF1058_RS11500 at 365.550 kb on + strand, within HMPREF1058_RS11500 at 365.551 kb on - strand, within HMPREF1058_RS11500 at 365.551 kb on - strand, within HMPREF1058_RS11500 at 365.599 kb on - strand, within HMPREF1058_RS11500 at 365.796 kb on + strand, within HMPREF1058_RS11500 at 365.796 kb on + strand, within HMPREF1058_RS11500 at 365.854 kb on + strand, within HMPREF1058_RS11500 at 365.856 kb on + strand, within HMPREF1058_RS11500 at 365.862 kb on - strand, within HMPREF1058_RS11500 at 365.868 kb on - strand, within HMPREF1058_RS11500 at 365.877 kb on + strand, within HMPREF1058_RS11500 at 365.926 kb on + strand, within HMPREF1058_RS11500 at 365.958 kb on + strand, within HMPREF1058_RS11500 at 365.994 kb on - strand, within HMPREF1058_RS11500 at 366.033 kb on + strand, within HMPREF1058_RS11500 at 366.072 kb on + strand, within HMPREF1058_RS11500 at 366.083 kb on + strand, within HMPREF1058_RS11500 at 366.243 kb on + strand at 366.281 kb on + strand at 366.357 kb on + strand at 366.422 kb on + strand at 366.423 kb on - strand at 366.427 kb on - strand at 366.436 kb on - strand at 366.478 kb on + strand at 366.492 kb on + strand at 366.534 kb on + strand at 366.534 kb on + strand at 366.562 kb on + strand at 366.571 kb on + strand at 366.712 kb on + strand at 366.713 kb on - strand at 366.715 kb on + strand at 366.717 kb on + strand at 366.717 kb on + strand at 366.718 kb on - strand at 366.773 kb on + strand, within HMPREF1058_RS11495 at 366.777 kb on + strand, within HMPREF1058_RS11495 at 366.778 kb on - strand, within HMPREF1058_RS11495 at 366.842 kb on + strand, within HMPREF1058_RS11495 at 366.843 kb on - strand, within HMPREF1058_RS11495 at 366.851 kb on + strand, within HMPREF1058_RS11495 at 366.895 kb on - strand, within HMPREF1058_RS11495 at 366.897 kb on + strand, within HMPREF1058_RS11495 at 366.898 kb on - strand, within HMPREF1058_RS11495 at 366.898 kb on - strand, within HMPREF1058_RS11495 at 366.901 kb on + strand, within HMPREF1058_RS11495 at 366.904 kb on - strand, within HMPREF1058_RS11495 at 366.916 kb on + strand, within HMPREF1058_RS11495 at 366.916 kb on + strand, within HMPREF1058_RS11495 at 366.942 kb on + strand, within HMPREF1058_RS11495 at 367.011 kb on + strand, within HMPREF1058_RS11495 at 367.011 kb on + strand, within HMPREF1058_RS11495 at 367.012 kb on - strand, within HMPREF1058_RS11495 at 367.015 kb on + strand at 367.016 kb on - strand, within HMPREF1058_RS11495 at 367.023 kb on + strand, within HMPREF1058_RS11495 at 367.035 kb on + strand at 367.045 kb on + strand, within HMPREF1058_RS11495 at 367.076 kb on + strand at 367.077 kb on - strand at 367.077 kb on - strand at 367.101 kb on + strand at 367.102 kb on - strand at 367.111 kb on + strand at 367.111 kb on + strand at 367.111 kb on + strand at 367.111 kb on + strand at 367.111 kb on + strand at 367.123 kb on - strand at 367.123 kb on - strand at 367.214 kb on - strand at 367.216 kb on - strand at 367.290 kb on + strand at 367.291 kb on - strand at 367.309 kb on + strand at 367.332 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Brucella 1x (C) complex media remove 363,441 - -0.3 364,802 + HMPREF1058_RS11500 0.45 -1.5 364,897 + HMPREF1058_RS11500 0.48 +0.2 364,976 + HMPREF1058_RS11500 0.51 +1.0 365,213 + HMPREF1058_RS11500 0.59 -1.4 365,242 + HMPREF1058_RS11500 0.60 -1.5 365,242 + HMPREF1058_RS11500 0.60 -1.9 365,243 - HMPREF1058_RS11500 0.60 -2.4 365,243 - HMPREF1058_RS11500 0.60 -2.1 365,244 + HMPREF1058_RS11500 0.60 -0.5 365,261 + HMPREF1058_RS11500 0.60 -0.7 365,262 - HMPREF1058_RS11500 0.60 -1.3 365,324 + HMPREF1058_RS11500 0.62 +0.2 365,449 + HMPREF1058_RS11500 0.67 -0.3 365,501 + HMPREF1058_RS11500 0.69 -0.4 365,549 - HMPREF1058_RS11500 0.70 -0.2 365,549 - HMPREF1058_RS11500 0.70 -1.7 365,549 - HMPREF1058_RS11500 0.70 -0.4 365,550 + HMPREF1058_RS11500 0.70 -0.2 365,550 + HMPREF1058_RS11500 0.70 -0.8 365,551 - HMPREF1058_RS11500 0.70 -1.9 365,551 - HMPREF1058_RS11500 0.70 -0.7 365,599 - HMPREF1058_RS11500 0.72 -0.1 365,796 + HMPREF1058_RS11500 0.79 -0.5 365,796 + HMPREF1058_RS11500 0.79 -1.0 365,854 + HMPREF1058_RS11500 0.81 -0.1 365,856 + HMPREF1058_RS11500 0.81 -0.2 365,862 - HMPREF1058_RS11500 0.81 -1.4 365,868 - HMPREF1058_RS11500 0.81 -1.8 365,877 + HMPREF1058_RS11500 0.81 -1.4 365,926 + HMPREF1058_RS11500 0.83 -1.2 365,958 + HMPREF1058_RS11500 0.84 +0.8 365,994 - HMPREF1058_RS11500 0.85 -1.2 366,033 + HMPREF1058_RS11500 0.87 -1.9 366,072 + HMPREF1058_RS11500 0.88 -0.2 366,083 + HMPREF1058_RS11500 0.89 -0.3 366,243 + -0.8 366,281 + -2.0 366,357 + -2.3 366,422 + -0.3 366,423 - -1.0 366,427 - -0.5 366,436 - -1.3 366,478 + -0.0 366,492 + +1.0 366,534 + +0.1 366,534 + -0.7 366,562 + -0.5 366,571 + -0.1 366,712 + +0.6 366,713 - -0.2 366,715 + -0.2 366,717 + -0.7 366,717 + +0.5 366,718 - +0.5 366,773 + HMPREF1058_RS11495 0.12 -0.6 366,777 + HMPREF1058_RS11495 0.13 -2.3 366,778 - HMPREF1058_RS11495 0.13 -0.8 366,842 + HMPREF1058_RS11495 0.30 -0.2 366,843 - HMPREF1058_RS11495 0.30 +0.2 366,851 + HMPREF1058_RS11495 0.32 +0.0 366,895 - HMPREF1058_RS11495 0.43 -0.3 366,897 + HMPREF1058_RS11495 0.44 -0.3 366,898 - HMPREF1058_RS11495 0.44 +0.2 366,898 - HMPREF1058_RS11495 0.44 +0.6 366,901 + HMPREF1058_RS11495 0.45 +0.2 366,904 - HMPREF1058_RS11495 0.46 +0.0 366,916 + HMPREF1058_RS11495 0.49 -0.2 366,916 + HMPREF1058_RS11495 0.49 -0.4 366,942 + HMPREF1058_RS11495 0.56 +1.1 367,011 + HMPREF1058_RS11495 0.73 -0.2 367,011 + HMPREF1058_RS11495 0.73 +0.9 367,012 - HMPREF1058_RS11495 0.74 +0.2 367,015 + +0.4 367,016 - HMPREF1058_RS11495 0.75 -0.9 367,023 + HMPREF1058_RS11495 0.76 +0.9 367,035 + -1.4 367,045 + HMPREF1058_RS11495 0.82 -0.1 367,076 + +0.2 367,077 - +0.6 367,077 - +1.3 367,101 + +0.2 367,102 - -0.1 367,111 + -0.7 367,111 + +0.7 367,111 + -0.1 367,111 + +0.4 367,111 + -0.2 367,123 - -0.6 367,123 - +0.3 367,214 - -0.1 367,216 - +0.6 367,290 + -0.5 367,291 - -0.2 367,309 + -0.9 367,332 + -1.2
Or see this region's nucleotide sequence