Experiment: Brucella 1x (C) complex media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS10370 and HMPREF1058_RS10365 overlap by 4 nucleotides HMPREF1058_RS10365 and HMPREF1058_RS10360 overlap by 1 nucleotides HMPREF1058_RS10360 and HMPREF1058_RS10355 are separated by 3 nucleotides HMPREF1058_RS10355 and HMPREF1058_RS10350 are separated by 3 nucleotides HMPREF1058_RS10350 and HMPREF1058_RS10345 are separated by 12 nucleotides
HMPREF1058_RS10370: HMPREF1058_RS10370 - hypothetical protein, at 686,687 to 687,094
_RS10370
HMPREF1058_RS10365: HMPREF1058_RS10365 - hypothetical protein, at 687,091 to 687,525
_RS10365
HMPREF1058_RS10360: HMPREF1058_RS10360 - hypothetical protein, at 687,525 to 687,836
_RS10360
HMPREF1058_RS10355: HMPREF1058_RS10355 - hypothetical protein, at 687,840 to 688,166
_RS10355
HMPREF1058_RS10350: HMPREF1058_RS10350 - hypothetical protein, at 688,170 to 688,517
_RS10350
HMPREF1058_RS10345: HMPREF1058_RS10345 - hypothetical protein, at 688,530 to 689,759
_RS10345
Position (kb) 687
688
689 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 686.872 kb on + strand, within HMPREF1058_RS10370 at 686.902 kb on + strand, within HMPREF1058_RS10370 at 686.902 kb on + strand, within HMPREF1058_RS10370 at 686.906 kb on + strand, within HMPREF1058_RS10370 at 686.963 kb on + strand, within HMPREF1058_RS10370 at 686.963 kb on + strand, within HMPREF1058_RS10370 at 686.963 kb on + strand, within HMPREF1058_RS10370 at 686.966 kb on - strand, within HMPREF1058_RS10370 at 687.171 kb on + strand, within HMPREF1058_RS10365 at 687.171 kb on + strand, within HMPREF1058_RS10365 at 687.187 kb on + strand, within HMPREF1058_RS10365 at 687.187 kb on + strand, within HMPREF1058_RS10365 at 687.188 kb on - strand, within HMPREF1058_RS10365 at 687.191 kb on + strand at 687.191 kb on + strand, within HMPREF1058_RS10365 at 687.213 kb on + strand, within HMPREF1058_RS10365 at 687.214 kb on - strand, within HMPREF1058_RS10365 at 687.217 kb on + strand, within HMPREF1058_RS10365 at 687.217 kb on + strand, within HMPREF1058_RS10365 at 687.231 kb on + strand, within HMPREF1058_RS10365 at 687.318 kb on + strand, within HMPREF1058_RS10365 at 687.381 kb on + strand, within HMPREF1058_RS10365 at 687.432 kb on + strand, within HMPREF1058_RS10365 at 687.433 kb on - strand, within HMPREF1058_RS10365 at 687.444 kb on + strand, within HMPREF1058_RS10365 at 687.445 kb on - strand, within HMPREF1058_RS10365 at 687.445 kb on - strand, within HMPREF1058_RS10365 at 687.489 kb on + strand at 687.540 kb on + strand at 687.605 kb on + strand, within HMPREF1058_RS10360 at 687.614 kb on + strand, within HMPREF1058_RS10360 at 687.664 kb on + strand, within HMPREF1058_RS10360 at 687.695 kb on - strand, within HMPREF1058_RS10360 at 687.695 kb on - strand, within HMPREF1058_RS10360 at 687.759 kb on - strand, within HMPREF1058_RS10360 at 687.809 kb on + strand at 687.810 kb on - strand at 687.816 kb on + strand at 687.841 kb on + strand at 687.842 kb on - strand at 687.893 kb on + strand, within HMPREF1058_RS10355 at 687.893 kb on + strand, within HMPREF1058_RS10355 at 687.897 kb on + strand, within HMPREF1058_RS10355 at 687.898 kb on - strand, within HMPREF1058_RS10355 at 688.065 kb on + strand, within HMPREF1058_RS10355 at 688.065 kb on + strand, within HMPREF1058_RS10355 at 688.065 kb on + strand, within HMPREF1058_RS10355 at 688.065 kb on + strand, within HMPREF1058_RS10355 at 688.066 kb on - strand, within HMPREF1058_RS10355 at 688.179 kb on - strand at 688.182 kb on + strand at 688.507 kb on - strand at 688.599 kb on + strand at 688.697 kb on - strand, within HMPREF1058_RS10345 at 688.777 kb on - strand, within HMPREF1058_RS10345 at 688.847 kb on + strand, within HMPREF1058_RS10345 at 688.879 kb on - strand, within HMPREF1058_RS10345 at 688.982 kb on + strand, within HMPREF1058_RS10345 at 689.136 kb on - strand, within HMPREF1058_RS10345
Per-strain Table
Position Strand Gene LocusTag Fraction Brucella 1x (C) complex media remove 686,872 + HMPREF1058_RS10370 0.45 -0.7 686,902 + HMPREF1058_RS10370 0.53 -0.8 686,902 + HMPREF1058_RS10370 0.53 +0.2 686,906 + HMPREF1058_RS10370 0.54 -1.4 686,963 + HMPREF1058_RS10370 0.68 +0.3 686,963 + HMPREF1058_RS10370 0.68 -0.6 686,963 + HMPREF1058_RS10370 0.68 +0.1 686,966 - HMPREF1058_RS10370 0.68 -2.9 687,171 + HMPREF1058_RS10365 0.18 +0.3 687,171 + HMPREF1058_RS10365 0.18 +0.5 687,187 + HMPREF1058_RS10365 0.22 +0.3 687,187 + HMPREF1058_RS10365 0.22 +0.4 687,188 - HMPREF1058_RS10365 0.22 -3.4 687,191 + -0.7 687,191 + HMPREF1058_RS10365 0.23 +0.1 687,213 + HMPREF1058_RS10365 0.28 -0.9 687,214 - HMPREF1058_RS10365 0.28 -2.9 687,217 + HMPREF1058_RS10365 0.29 +0.2 687,217 + HMPREF1058_RS10365 0.29 +0.1 687,231 + HMPREF1058_RS10365 0.32 -0.0 687,318 + HMPREF1058_RS10365 0.52 -1.4 687,381 + HMPREF1058_RS10365 0.67 -0.2 687,432 + HMPREF1058_RS10365 0.78 +0.6 687,433 - HMPREF1058_RS10365 0.79 -0.5 687,444 + HMPREF1058_RS10365 0.81 -0.7 687,445 - HMPREF1058_RS10365 0.81 -3.2 687,445 - HMPREF1058_RS10365 0.81 -1.4 687,489 + -2.0 687,540 + -1.3 687,605 + HMPREF1058_RS10360 0.26 +0.5 687,614 + HMPREF1058_RS10360 0.29 -1.0 687,664 + HMPREF1058_RS10360 0.45 +0.6 687,695 - HMPREF1058_RS10360 0.54 +0.8 687,695 - HMPREF1058_RS10360 0.54 -1.2 687,759 - HMPREF1058_RS10360 0.75 -1.6 687,809 + -1.3 687,810 - -1.4 687,816 + +0.3 687,841 + -0.7 687,842 - -3.4 687,893 + HMPREF1058_RS10355 0.16 -0.1 687,893 + HMPREF1058_RS10355 0.16 -0.4 687,897 + HMPREF1058_RS10355 0.17 -0.2 687,898 - HMPREF1058_RS10355 0.18 -3.3 688,065 + HMPREF1058_RS10355 0.69 -0.2 688,065 + HMPREF1058_RS10355 0.69 -0.2 688,065 + HMPREF1058_RS10355 0.69 +0.1 688,065 + HMPREF1058_RS10355 0.69 -0.9 688,066 - HMPREF1058_RS10355 0.69 -2.2 688,179 - -1.4 688,182 + +0.2 688,507 - -1.0 688,599 + -0.0 688,697 - HMPREF1058_RS10345 0.14 -1.6 688,777 - HMPREF1058_RS10345 0.20 -2.5 688,847 + HMPREF1058_RS10345 0.26 -0.5 688,879 - HMPREF1058_RS10345 0.28 -0.8 688,982 + HMPREF1058_RS10345 0.37 -0.1 689,136 - HMPREF1058_RS10345 0.49 -0.0
Or see this region's nucleotide sequence