Experiment: Brucella 1x (C) complex media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS10360 and HMPREF1058_RS10355 are separated by 3 nucleotides HMPREF1058_RS10355 and HMPREF1058_RS10350 are separated by 3 nucleotides HMPREF1058_RS10350 and HMPREF1058_RS10345 are separated by 12 nucleotides HMPREF1058_RS10345 and HMPREF1058_RS10340 are separated by 13 nucleotides HMPREF1058_RS10340 and HMPREF1058_RS10335 are separated by 11 nucleotides
HMPREF1058_RS10360: HMPREF1058_RS10360 - hypothetical protein, at 687,525 to 687,836
_RS10360
HMPREF1058_RS10355: HMPREF1058_RS10355 - hypothetical protein, at 687,840 to 688,166
_RS10355
HMPREF1058_RS10350: HMPREF1058_RS10350 - hypothetical protein, at 688,170 to 688,517
_RS10350
HMPREF1058_RS10345: HMPREF1058_RS10345 - hypothetical protein, at 688,530 to 689,759
_RS10345
HMPREF1058_RS10340: HMPREF1058_RS10340 - hypothetical protein, at 689,773 to 690,420
_RS10340
HMPREF1058_RS10335: HMPREF1058_RS10335 - hypothetical protein, at 690,432 to 691,019
_RS10335
Position (kb) 688
689
690 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 687.540 kb on + strand at 687.605 kb on + strand, within HMPREF1058_RS10360 at 687.614 kb on + strand, within HMPREF1058_RS10360 at 687.664 kb on + strand, within HMPREF1058_RS10360 at 687.695 kb on - strand, within HMPREF1058_RS10360 at 687.695 kb on - strand, within HMPREF1058_RS10360 at 687.759 kb on - strand, within HMPREF1058_RS10360 at 687.809 kb on + strand at 687.810 kb on - strand at 687.816 kb on + strand at 687.841 kb on + strand at 687.842 kb on - strand at 687.893 kb on + strand, within HMPREF1058_RS10355 at 687.893 kb on + strand, within HMPREF1058_RS10355 at 687.897 kb on + strand, within HMPREF1058_RS10355 at 687.898 kb on - strand, within HMPREF1058_RS10355 at 688.065 kb on + strand, within HMPREF1058_RS10355 at 688.065 kb on + strand, within HMPREF1058_RS10355 at 688.065 kb on + strand, within HMPREF1058_RS10355 at 688.065 kb on + strand, within HMPREF1058_RS10355 at 688.066 kb on - strand, within HMPREF1058_RS10355 at 688.179 kb on - strand at 688.182 kb on + strand at 688.507 kb on - strand at 688.599 kb on + strand at 688.697 kb on - strand, within HMPREF1058_RS10345 at 688.777 kb on - strand, within HMPREF1058_RS10345 at 688.847 kb on + strand, within HMPREF1058_RS10345 at 688.879 kb on - strand, within HMPREF1058_RS10345 at 688.982 kb on + strand, within HMPREF1058_RS10345 at 689.136 kb on - strand, within HMPREF1058_RS10345 at 689.408 kb on + strand, within HMPREF1058_RS10345 at 689.447 kb on + strand, within HMPREF1058_RS10345 at 689.456 kb on + strand, within HMPREF1058_RS10345 at 689.457 kb on - strand, within HMPREF1058_RS10345 at 689.457 kb on - strand, within HMPREF1058_RS10345 at 689.563 kb on + strand, within HMPREF1058_RS10345 at 689.564 kb on - strand, within HMPREF1058_RS10345 at 689.577 kb on - strand, within HMPREF1058_RS10345 at 689.577 kb on - strand, within HMPREF1058_RS10345 at 689.751 kb on - strand at 689.751 kb on - strand at 689.762 kb on - strand at 689.879 kb on + strand, within HMPREF1058_RS10340 at 689.879 kb on + strand, within HMPREF1058_RS10340 at 689.879 kb on + strand, within HMPREF1058_RS10340 at 689.898 kb on + strand, within HMPREF1058_RS10340 at 690.052 kb on + strand, within HMPREF1058_RS10340 at 690.052 kb on + strand, within HMPREF1058_RS10340 at 690.096 kb on + strand, within HMPREF1058_RS10340 at 690.140 kb on - strand, within HMPREF1058_RS10340 at 690.198 kb on + strand, within HMPREF1058_RS10340 at 690.304 kb on - strand, within HMPREF1058_RS10340 at 690.541 kb on - strand, within HMPREF1058_RS10335 at 690.565 kb on + strand, within HMPREF1058_RS10335 at 690.566 kb on - strand, within HMPREF1058_RS10335
Per-strain Table
Position Strand Gene LocusTag Fraction Brucella 1x (C) complex media remove 687,540 + -1.3 687,605 + HMPREF1058_RS10360 0.26 +0.5 687,614 + HMPREF1058_RS10360 0.29 -1.0 687,664 + HMPREF1058_RS10360 0.45 +0.6 687,695 - HMPREF1058_RS10360 0.54 +0.8 687,695 - HMPREF1058_RS10360 0.54 -1.2 687,759 - HMPREF1058_RS10360 0.75 -1.6 687,809 + -1.3 687,810 - -1.4 687,816 + +0.3 687,841 + -0.7 687,842 - -3.4 687,893 + HMPREF1058_RS10355 0.16 -0.1 687,893 + HMPREF1058_RS10355 0.16 -0.4 687,897 + HMPREF1058_RS10355 0.17 -0.2 687,898 - HMPREF1058_RS10355 0.18 -3.3 688,065 + HMPREF1058_RS10355 0.69 -0.2 688,065 + HMPREF1058_RS10355 0.69 -0.2 688,065 + HMPREF1058_RS10355 0.69 +0.1 688,065 + HMPREF1058_RS10355 0.69 -0.9 688,066 - HMPREF1058_RS10355 0.69 -2.2 688,179 - -1.4 688,182 + +0.2 688,507 - -1.0 688,599 + -0.0 688,697 - HMPREF1058_RS10345 0.14 -1.6 688,777 - HMPREF1058_RS10345 0.20 -2.5 688,847 + HMPREF1058_RS10345 0.26 -0.5 688,879 - HMPREF1058_RS10345 0.28 -0.8 688,982 + HMPREF1058_RS10345 0.37 -0.1 689,136 - HMPREF1058_RS10345 0.49 -0.0 689,408 + HMPREF1058_RS10345 0.71 -0.4 689,447 + HMPREF1058_RS10345 0.75 +0.1 689,456 + HMPREF1058_RS10345 0.75 +0.3 689,457 - HMPREF1058_RS10345 0.75 -2.7 689,457 - HMPREF1058_RS10345 0.75 +0.2 689,563 + HMPREF1058_RS10345 0.84 -0.3 689,564 - HMPREF1058_RS10345 0.84 -0.7 689,577 - HMPREF1058_RS10345 0.85 -1.4 689,577 - HMPREF1058_RS10345 0.85 +0.6 689,751 - -1.3 689,751 - -1.3 689,762 - -0.0 689,879 + HMPREF1058_RS10340 0.16 +0.0 689,879 + HMPREF1058_RS10340 0.16 -0.2 689,879 + HMPREF1058_RS10340 0.16 -2.1 689,898 + HMPREF1058_RS10340 0.19 -0.2 690,052 + HMPREF1058_RS10340 0.43 -0.6 690,052 + HMPREF1058_RS10340 0.43 -0.0 690,096 + HMPREF1058_RS10340 0.50 -0.0 690,140 - HMPREF1058_RS10340 0.57 -0.9 690,198 + HMPREF1058_RS10340 0.66 -0.2 690,304 - HMPREF1058_RS10340 0.82 -1.4 690,541 - HMPREF1058_RS10335 0.19 -0.9 690,565 + HMPREF1058_RS10335 0.23 -0.2 690,566 - HMPREF1058_RS10335 0.23 -1.9
Or see this region's nucleotide sequence