Experiment: Brucella 1x (C) complex media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS10340 and HMPREF1058_RS10335 are separated by 11 nucleotides HMPREF1058_RS10335 and HMPREF1058_RS10330 are separated by 378 nucleotides HMPREF1058_RS10330 and HMPREF1058_RS21615 are separated by 3 nucleotides HMPREF1058_RS21615 and HMPREF1058_RS10325 are separated by 41 nucleotides HMPREF1058_RS10325 and HMPREF1058_RS10315 are separated by 194 nucleotides
HMPREF1058_RS10340: HMPREF1058_RS10340 - hypothetical protein, at 689,773 to 690,420
_RS10340
HMPREF1058_RS10335: HMPREF1058_RS10335 - hypothetical protein, at 690,432 to 691,019
_RS10335
HMPREF1058_RS10330: HMPREF1058_RS10330 - hypothetical protein, at 691,398 to 691,763
_RS10330
HMPREF1058_RS21615: HMPREF1058_RS21615 - hypothetical protein, at 691,767 to 691,907
_RS21615
HMPREF1058_RS10325: HMPREF1058_RS10325 - hypothetical protein, at 691,949 to 692,188
_RS10325
HMPREF1058_RS10315: HMPREF1058_RS10315 - sigma-70 family RNA polymerase sigma factor, at 692,383 to 692,910
_RS10315
Position (kb) 691
692 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 690.541 kb on - strand, within HMPREF1058_RS10335 at 690.565 kb on + strand, within HMPREF1058_RS10335 at 690.566 kb on - strand, within HMPREF1058_RS10335 at 690.868 kb on - strand, within HMPREF1058_RS10335 at 690.955 kb on + strand, within HMPREF1058_RS10335 at 690.980 kb on + strand at 691.253 kb on - strand at 691.253 kb on - strand at 691.337 kb on - strand at 691.337 kb on - strand at 691.455 kb on - strand, within HMPREF1058_RS10330 at 691.482 kb on - strand, within HMPREF1058_RS10330 at 691.509 kb on - strand, within HMPREF1058_RS10330 at 691.599 kb on - strand, within HMPREF1058_RS10330 at 691.688 kb on - strand, within HMPREF1058_RS10330 at 691.688 kb on - strand, within HMPREF1058_RS10330 at 691.777 kb on - strand at 691.843 kb on - strand, within HMPREF1058_RS21615 at 691.889 kb on - strand, within HMPREF1058_RS21615 at 691.934 kb on - strand at 691.987 kb on + strand, within HMPREF1058_RS10325 at 691.987 kb on + strand, within HMPREF1058_RS10325 at 691.988 kb on - strand, within HMPREF1058_RS10325 at 691.988 kb on - strand, within HMPREF1058_RS10325 at 692.055 kb on + strand, within HMPREF1058_RS10325 at 692.056 kb on - strand, within HMPREF1058_RS10325 at 692.056 kb on - strand, within HMPREF1058_RS10325 at 692.059 kb on - strand, within HMPREF1058_RS10325 at 692.063 kb on - strand, within HMPREF1058_RS10325 at 692.063 kb on - strand, within HMPREF1058_RS10325 at 692.066 kb on + strand, within HMPREF1058_RS10325 at 692.129 kb on - strand, within HMPREF1058_RS10325 at 692.174 kb on + strand at 692.187 kb on - strand at 692.193 kb on - strand at 692.215 kb on - strand at 692.216 kb on + strand at 692.216 kb on + strand at 692.362 kb on + strand at 692.363 kb on - strand at 692.367 kb on - strand at 692.367 kb on - strand at 692.431 kb on - strand at 692.463 kb on - strand, within HMPREF1058_RS10315 at 692.489 kb on - strand, within HMPREF1058_RS10315 at 692.489 kb on - strand, within HMPREF1058_RS10315 at 692.489 kb on - strand, within HMPREF1058_RS10315 at 692.514 kb on - strand, within HMPREF1058_RS10315 at 692.518 kb on - strand, within HMPREF1058_RS10315 at 692.520 kb on - strand, within HMPREF1058_RS10315 at 692.589 kb on - strand, within HMPREF1058_RS10315 at 692.609 kb on - strand, within HMPREF1058_RS10315 at 692.640 kb on - strand, within HMPREF1058_RS10315 at 692.644 kb on - strand at 692.743 kb on - strand, within HMPREF1058_RS10315 at 692.748 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Brucella 1x (C) complex media remove 690,541 - HMPREF1058_RS10335 0.19 -0.9 690,565 + HMPREF1058_RS10335 0.23 -0.2 690,566 - HMPREF1058_RS10335 0.23 -1.9 690,868 - HMPREF1058_RS10335 0.74 -0.3 690,955 + HMPREF1058_RS10335 0.89 +0.3 690,980 + +0.5 691,253 - -0.5 691,253 - -3.8 691,337 - -1.9 691,337 - -3.7 691,455 - HMPREF1058_RS10330 0.16 -1.1 691,482 - HMPREF1058_RS10330 0.23 -1.8 691,509 - HMPREF1058_RS10330 0.30 -0.9 691,599 - HMPREF1058_RS10330 0.55 -0.3 691,688 - HMPREF1058_RS10330 0.79 +0.1 691,688 - HMPREF1058_RS10330 0.79 -0.2 691,777 - -0.8 691,843 - HMPREF1058_RS21615 0.54 -0.5 691,889 - HMPREF1058_RS21615 0.87 +0.0 691,934 - -0.9 691,987 + HMPREF1058_RS10325 0.16 -1.0 691,987 + HMPREF1058_RS10325 0.16 +0.2 691,988 - HMPREF1058_RS10325 0.16 -0.4 691,988 - HMPREF1058_RS10325 0.16 -0.9 692,055 + HMPREF1058_RS10325 0.44 -0.1 692,056 - HMPREF1058_RS10325 0.45 +0.2 692,056 - HMPREF1058_RS10325 0.45 -0.4 692,059 - HMPREF1058_RS10325 0.46 +0.7 692,063 - HMPREF1058_RS10325 0.47 +1.1 692,063 - HMPREF1058_RS10325 0.47 +0.2 692,066 + HMPREF1058_RS10325 0.49 +0.6 692,129 - HMPREF1058_RS10325 0.75 -0.5 692,174 + -0.0 692,187 - +1.3 692,193 - -0.3 692,215 - -0.6 692,216 + -1.0 692,216 + -0.6 692,362 + -1.5 692,363 - +0.4 692,367 - -0.7 692,367 - -0.1 692,431 - -0.3 692,463 - HMPREF1058_RS10315 0.15 -0.3 692,489 - HMPREF1058_RS10315 0.20 +0.4 692,489 - HMPREF1058_RS10315 0.20 +1.5 692,489 - HMPREF1058_RS10315 0.20 +1.6 692,514 - HMPREF1058_RS10315 0.25 -1.7 692,518 - HMPREF1058_RS10315 0.26 -0.3 692,520 - HMPREF1058_RS10315 0.26 +0.5 692,589 - HMPREF1058_RS10315 0.39 -0.2 692,609 - HMPREF1058_RS10315 0.43 +0.3 692,640 - HMPREF1058_RS10315 0.49 -0.1 692,644 - +1.1 692,743 - HMPREF1058_RS10315 0.68 +0.2 692,748 - -0.8
Or see this region's nucleotide sequence