Experiment: Brucella 1x (C) complex media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS20740 and HMPREF1058_RS09985 are separated by 11 nucleotides HMPREF1058_RS09985 and HMPREF1058_RS20745 are separated by 12 nucleotides HMPREF1058_RS20745 and HMPREF1058_RS09980 are separated by 15 nucleotides
HMPREF1058_RS20740: HMPREF1058_RS20740 - hypothetical protein, at 751,869 to 752,084
_RS20740
HMPREF1058_RS09985: HMPREF1058_RS09985 - hypothetical protein, at 752,096 to 752,317
_RS09985
HMPREF1058_RS20745: HMPREF1058_RS20745 - hypothetical protein, at 752,330 to 752,926
_RS20745
HMPREF1058_RS09980: HMPREF1058_RS09980 - PcfK-like family protein, at 752,942 to 753,364
_RS09980
Position (kb) 752
753 Strain fitness (log2 ratio) -2
-1
0
1 at 751.127 kb on + strand at 751.128 kb on - strand at 751.186 kb on - strand at 751.400 kb on + strand at 751.400 kb on + strand at 751.677 kb on - strand at 751.845 kb on - strand at 751.905 kb on + strand, within HMPREF1058_RS20740 at 752.139 kb on - strand, within HMPREF1058_RS09985 at 752.156 kb on - strand, within HMPREF1058_RS09985 at 752.165 kb on + strand, within HMPREF1058_RS09985 at 752.166 kb on - strand, within HMPREF1058_RS09985 at 752.285 kb on + strand, within HMPREF1058_RS09985 at 752.286 kb on - strand, within HMPREF1058_RS09985 at 752.351 kb on + strand at 752.351 kb on + strand at 752.368 kb on - strand at 752.403 kb on - strand, within HMPREF1058_RS20745 at 752.606 kb on + strand, within HMPREF1058_RS20745 at 752.655 kb on - strand, within HMPREF1058_RS20745 at 752.655 kb on - strand, within HMPREF1058_RS20745 at 753.049 kb on - strand, within HMPREF1058_RS09980 at 753.066 kb on - strand, within HMPREF1058_RS09980 at 753.166 kb on - strand, within HMPREF1058_RS09980 at 753.176 kb on - strand, within HMPREF1058_RS09980
Per-strain Table
Position Strand Gene LocusTag Fraction Brucella 1x (C) complex media remove 751,127 + -0.0 751,128 - -0.1 751,186 - +0.2 751,400 + -0.9 751,400 + -0.3 751,677 - -0.0 751,845 - +0.6 751,905 + HMPREF1058_RS20740 0.17 -2.6 752,139 - HMPREF1058_RS09985 0.19 +0.7 752,156 - HMPREF1058_RS09985 0.27 +0.1 752,165 + HMPREF1058_RS09985 0.31 -1.8 752,166 - HMPREF1058_RS09985 0.32 -0.8 752,285 + HMPREF1058_RS09985 0.85 -1.2 752,286 - HMPREF1058_RS09985 0.86 -1.4 752,351 + -1.3 752,351 + -1.5 752,368 - -0.1 752,403 - HMPREF1058_RS20745 0.12 +0.1 752,606 + HMPREF1058_RS20745 0.46 -1.2 752,655 - HMPREF1058_RS20745 0.54 -0.5 752,655 - HMPREF1058_RS20745 0.54 +0.0 753,049 - HMPREF1058_RS09980 0.25 +0.5 753,066 - HMPREF1058_RS09980 0.29 -0.2 753,166 - HMPREF1058_RS09980 0.53 -0.4 753,176 - HMPREF1058_RS09980 0.55 -0.2
Or see this region's nucleotide sequence