Experiment: Brucella 1x (C) complex media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS09705 and HMPREF1058_RS09700 are separated by 81 nucleotides HMPREF1058_RS09700 and HMPREF1058_RS21625 are separated by 286 nucleotides HMPREF1058_RS21625 and HMPREF1058_RS09695 are separated by 1 nucleotides
HMPREF1058_RS09705: HMPREF1058_RS09705 - lipopolysaccharide biosynthesis protein, at 814,365 to 815,801
_RS09705
HMPREF1058_RS09700: HMPREF1058_RS09700 - methionine--tRNA ligase, at 815,883 to 817,925
_RS09700
HMPREF1058_RS21625: HMPREF1058_RS21625 - hypothetical protein, at 818,212 to 818,379
_RS21625
HMPREF1058_RS09695: HMPREF1058_RS09695 - YifB family Mg chelatase-like AAA ATPase, at 818,381 to 819,919
_RS09695
Position (kb) 815
816
817
818 Strain fitness (log2 ratio) -1
0
1 at 815.808 kb on - strand at 815.880 kb on - strand at 815.908 kb on - strand at 816.145 kb on - strand, within HMPREF1058_RS09700 at 816.169 kb on - strand, within HMPREF1058_RS09700 at 816.169 kb on - strand, within HMPREF1058_RS09700 at 816.277 kb on - strand, within HMPREF1058_RS09700 at 818.040 kb on + strand at 818.051 kb on - strand at 818.051 kb on - strand at 818.088 kb on - strand at 818.102 kb on + strand at 818.127 kb on - strand at 818.217 kb on + strand at 818.225 kb on - strand at 818.226 kb on + strand at 818.315 kb on - strand, within HMPREF1058_RS21625 at 818.347 kb on + strand, within HMPREF1058_RS21625 at 818.378 kb on - strand at 818.378 kb on - strand at 818.416 kb on - strand at 818.447 kb on - strand at 818.493 kb on - strand at 818.493 kb on - strand at 818.497 kb on + strand at 818.619 kb on + strand, within HMPREF1058_RS09695 at 818.744 kb on + strand, within HMPREF1058_RS09695 at 818.744 kb on + strand, within HMPREF1058_RS09695 at 818.848 kb on + strand, within HMPREF1058_RS09695 at 818.850 kb on + strand, within HMPREF1058_RS09695 at 818.851 kb on - strand, within HMPREF1058_RS09695 at 818.917 kb on - strand, within HMPREF1058_RS09695
Per-strain Table
Position Strand Gene LocusTag Fraction Brucella 1x (C) complex media remove 815,808 - +0.5 815,880 - +0.5 815,908 - +0.4 816,145 - HMPREF1058_RS09700 0.13 -1.2 816,169 - HMPREF1058_RS09700 0.14 -0.8 816,169 - HMPREF1058_RS09700 0.14 +0.1 816,277 - HMPREF1058_RS09700 0.19 -1.0 818,040 + -0.6 818,051 - +0.5 818,051 - -0.2 818,088 - -0.2 818,102 + +0.8 818,127 - -0.2 818,217 + -0.2 818,225 - +0.4 818,226 + -0.6 818,315 - HMPREF1058_RS21625 0.61 -0.4 818,347 + HMPREF1058_RS21625 0.80 +0.6 818,378 - -0.8 818,378 - -1.5 818,416 - -0.1 818,447 - -0.2 818,493 - +0.0 818,493 - +0.4 818,497 + -0.4 818,619 + HMPREF1058_RS09695 0.15 +0.2 818,744 + HMPREF1058_RS09695 0.24 -0.1 818,744 + HMPREF1058_RS09695 0.24 -0.8 818,848 + HMPREF1058_RS09695 0.30 -0.2 818,850 + HMPREF1058_RS09695 0.30 +0.0 818,851 - HMPREF1058_RS09695 0.31 -0.2 818,917 - HMPREF1058_RS09695 0.35 -0.3
Or see this region's nucleotide sequence