Experiment: Brucella 1x (C) complex media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS07660 and HMPREF1058_RS07655 are separated by 139 nucleotides HMPREF1058_RS07655 and HMPREF1058_RS07650 are separated by 108 nucleotides HMPREF1058_RS07650 and HMPREF1058_RS07645 are separated by 209 nucleotides
HMPREF1058_RS07660: HMPREF1058_RS07660 - IS1182 family transposase, at 168,057 to 169,712
_RS07660
HMPREF1058_RS07655: HMPREF1058_RS07655 - hypothetical protein, at 169,852 to 170,034
_RS07655
HMPREF1058_RS07650: HMPREF1058_RS07650 - MarR family transcriptional regulator, at 170,143 to 170,589
_RS07650
HMPREF1058_RS07645: HMPREF1058_RS07645 - 30S ribosomal protein S6, at 170,799 to 171,143
_RS07645
Position (kb) 169
170
171 Strain fitness (log2 ratio) -1
0
1 at 169.847 kb on - strand at 169.848 kb on + strand at 169.882 kb on - strand, within HMPREF1058_RS07655 at 170.011 kb on + strand, within HMPREF1058_RS07655 at 170.052 kb on - strand at 170.052 kb on - strand at 170.063 kb on - strand at 170.087 kb on - strand at 170.165 kb on - strand at 170.165 kb on - strand at 170.174 kb on - strand at 170.177 kb on - strand at 170.296 kb on + strand, within HMPREF1058_RS07650 at 170.391 kb on + strand, within HMPREF1058_RS07650 at 170.403 kb on + strand, within HMPREF1058_RS07650 at 170.408 kb on - strand, within HMPREF1058_RS07650 at 170.408 kb on - strand, within HMPREF1058_RS07650 at 170.542 kb on + strand, within HMPREF1058_RS07650 at 170.554 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Brucella 1x (C) complex media remove 169,847 - -0.0 169,848 + -0.1 169,882 - HMPREF1058_RS07655 0.16 -0.9 170,011 + HMPREF1058_RS07655 0.87 -1.0 170,052 - -0.0 170,052 - -1.7 170,063 - -1.1 170,087 - +0.1 170,165 - +0.1 170,165 - +0.4 170,174 - +0.7 170,177 - -0.2 170,296 + HMPREF1058_RS07650 0.34 +0.1 170,391 + HMPREF1058_RS07650 0.55 -0.2 170,403 + HMPREF1058_RS07650 0.58 +0.7 170,408 - HMPREF1058_RS07650 0.59 -0.6 170,408 - HMPREF1058_RS07650 0.59 +0.6 170,542 + HMPREF1058_RS07650 0.89 +0.3 170,554 + +0.3
Or see this region's nucleotide sequence