Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS07570

Experiment: Brucella 1x (C) complex media

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHMPREF1058_RS07575 and HMPREF1058_RS07570 are separated by 19 nucleotidesHMPREF1058_RS07570 and HMPREF1058_RS07565 are separated by 156 nucleotides HMPREF1058_RS07575: HMPREF1058_RS07575 - MCE family protein, at 187,479 to 188,366 _RS07575 HMPREF1058_RS07570: HMPREF1058_RS07570 - N-acetylmuramoyl-L-alanine amidase, at 188,386 to 189,615 _RS07570 HMPREF1058_RS07565: HMPREF1058_RS07565 - transporter, at 189,772 to 190,731 _RS07565 Position (kb) 188 189 190Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 187.389 kb on - strandat 187.480 kb on + strandat 187.517 kb on - strandat 187.660 kb on - strand, within HMPREF1058_RS07575at 187.666 kb on + strandat 187.667 kb on - strand, within HMPREF1058_RS07575at 187.703 kb on - strand, within HMPREF1058_RS07575at 187.803 kb on + strand, within HMPREF1058_RS07575at 187.903 kb on - strand, within HMPREF1058_RS07575at 187.947 kb on + strand, within HMPREF1058_RS07575at 187.948 kb on - strandat 188.031 kb on - strand, within HMPREF1058_RS07575at 188.043 kb on + strand, within HMPREF1058_RS07575at 188.044 kb on - strand, within HMPREF1058_RS07575at 188.188 kb on - strand, within HMPREF1058_RS07575at 188.192 kb on + strand, within HMPREF1058_RS07575at 188.193 kb on - strand, within HMPREF1058_RS07575at 188.194 kb on + strand, within HMPREF1058_RS07575at 188.195 kb on - strandat 188.255 kb on - strand, within HMPREF1058_RS07575at 188.280 kb on - strandat 188.338 kb on - strandat 188.338 kb on - strandat 188.374 kb on - strandat 188.385 kb on - strandat 188.385 kb on - strandat 188.476 kb on - strandat 188.482 kb on - strandat 188.504 kb on - strandat 188.536 kb on - strand, within HMPREF1058_RS07570at 188.538 kb on - strand, within HMPREF1058_RS07570at 188.541 kb on + strand, within HMPREF1058_RS07570at 188.542 kb on - strand, within HMPREF1058_RS07570at 188.564 kb on + strand, within HMPREF1058_RS07570at 188.565 kb on - strand, within HMPREF1058_RS07570at 188.579 kb on - strand, within HMPREF1058_RS07570at 188.579 kb on - strand, within HMPREF1058_RS07570at 188.629 kb on + strand, within HMPREF1058_RS07570at 188.636 kb on - strandat 188.641 kb on - strand, within HMPREF1058_RS07570at 188.815 kb on + strand, within HMPREF1058_RS07570at 188.873 kb on + strand, within HMPREF1058_RS07570at 188.873 kb on + strand, within HMPREF1058_RS07570at 188.874 kb on - strand, within HMPREF1058_RS07570at 188.883 kb on + strand, within HMPREF1058_RS07570at 188.884 kb on - strand, within HMPREF1058_RS07570at 188.918 kb on + strand, within HMPREF1058_RS07570at 188.944 kb on - strand, within HMPREF1058_RS07570at 188.944 kb on - strand, within HMPREF1058_RS07570at 188.945 kb on + strand, within HMPREF1058_RS07570at 188.967 kb on + strand, within HMPREF1058_RS07570at 188.987 kb on - strand, within HMPREF1058_RS07570at 189.165 kb on - strand, within HMPREF1058_RS07570at 189.245 kb on + strand, within HMPREF1058_RS07570at 189.292 kb on - strandat 189.292 kb on - strand, within HMPREF1058_RS07570at 189.292 kb on - strand, within HMPREF1058_RS07570at 189.292 kb on - strand, within HMPREF1058_RS07570at 189.296 kb on - strand, within HMPREF1058_RS07570at 189.298 kb on - strand, within HMPREF1058_RS07570at 189.308 kb on - strand, within HMPREF1058_RS07570at 189.380 kb on + strand, within HMPREF1058_RS07570at 189.380 kb on + strand, within HMPREF1058_RS07570at 189.380 kb on + strand, within HMPREF1058_RS07570at 189.380 kb on + strand, within HMPREF1058_RS07570at 189.381 kb on - strand, within HMPREF1058_RS07570at 189.383 kb on - strand, within HMPREF1058_RS07570at 189.400 kb on - strand, within HMPREF1058_RS07570at 189.405 kb on + strand, within HMPREF1058_RS07570at 189.436 kb on + strand, within HMPREF1058_RS07570at 189.521 kb on - strandat 189.590 kb on - strandat 189.597 kb on + strandat 189.598 kb on - strandat 189.732 kb on + strandat 189.755 kb on - strandat 189.943 kb on - strand, within HMPREF1058_RS07565at 190.030 kb on - strand, within HMPREF1058_RS07565at 190.046 kb on - strand, within HMPREF1058_RS07565at 190.070 kb on - strand, within HMPREF1058_RS07565at 190.070 kb on - strand, within HMPREF1058_RS07565at 190.104 kb on + strand, within HMPREF1058_RS07565at 190.133 kb on + strand, within HMPREF1058_RS07565at 190.134 kb on - strand, within HMPREF1058_RS07565at 190.178 kb on - strand, within HMPREF1058_RS07565at 190.178 kb on - strand, within HMPREF1058_RS07565at 190.246 kb on - strand, within HMPREF1058_RS07565at 190.246 kb on - strand, within HMPREF1058_RS07565at 190.246 kb on - strand, within HMPREF1058_RS07565at 190.246 kb on - strand, within HMPREF1058_RS07565at 190.342 kb on + strand, within HMPREF1058_RS07565at 190.394 kb on - strand, within HMPREF1058_RS07565at 190.456 kb on - strand, within HMPREF1058_RS07565at 190.467 kb on - strand, within HMPREF1058_RS07565at 190.549 kb on + strand, within HMPREF1058_RS07565at 190.550 kb on - strand, within HMPREF1058_RS07565at 190.560 kb on + strand, within HMPREF1058_RS07565at 190.561 kb on - strand, within HMPREF1058_RS07565at 190.598 kb on + strandat 190.599 kb on - strand, within HMPREF1058_RS07565at 190.601 kb on + strand, within HMPREF1058_RS07565at 190.605 kb on + strand, within HMPREF1058_RS07565

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Brucella 1x (C) complex media
remove
187,389 - +1.5
187,480 + -0.7
187,517 - +0.2
187,660 - HMPREF1058_RS07575 0.20 -0.8
187,666 + +0.7
187,667 - HMPREF1058_RS07575 0.21 -1.1
187,703 - HMPREF1058_RS07575 0.25 -0.3
187,803 + HMPREF1058_RS07575 0.36 -0.3
187,903 - HMPREF1058_RS07575 0.48 -2.5
187,947 + HMPREF1058_RS07575 0.53 +0.7
187,948 - -1.6
188,031 - HMPREF1058_RS07575 0.62 -2.6
188,043 + HMPREF1058_RS07575 0.64 -1.4
188,044 - HMPREF1058_RS07575 0.64 -1.3
188,188 - HMPREF1058_RS07575 0.80 -1.1
188,192 + HMPREF1058_RS07575 0.80 +0.1
188,193 - HMPREF1058_RS07575 0.80 -0.7
188,194 + HMPREF1058_RS07575 0.81 -1.7
188,195 - -0.2
188,255 - HMPREF1058_RS07575 0.87 -1.9
188,280 - -1.6
188,338 - -0.7
188,338 - -2.4
188,374 - -1.9
188,385 - +0.9
188,385 - -0.1
188,476 - +0.5
188,482 - -0.2
188,504 - -0.4
188,536 - HMPREF1058_RS07570 0.12 -1.0
188,538 - HMPREF1058_RS07570 0.12 -0.2
188,541 + HMPREF1058_RS07570 0.13 -0.3
188,542 - HMPREF1058_RS07570 0.13 +0.3
188,564 + HMPREF1058_RS07570 0.14 -0.8
188,565 - HMPREF1058_RS07570 0.15 -0.5
188,579 - HMPREF1058_RS07570 0.16 -0.1
188,579 - HMPREF1058_RS07570 0.16 -0.6
188,629 + HMPREF1058_RS07570 0.20 -0.9
188,636 - -0.0
188,641 - HMPREF1058_RS07570 0.21 -1.9
188,815 + HMPREF1058_RS07570 0.35 -1.3
188,873 + HMPREF1058_RS07570 0.40 -0.9
188,873 + HMPREF1058_RS07570 0.40 -1.4
188,874 - HMPREF1058_RS07570 0.40 -1.2
188,883 + HMPREF1058_RS07570 0.40 -2.1
188,884 - HMPREF1058_RS07570 0.40 +0.0
188,918 + HMPREF1058_RS07570 0.43 -1.4
188,944 - HMPREF1058_RS07570 0.45 +1.0
188,944 - HMPREF1058_RS07570 0.45 +2.4
188,945 + HMPREF1058_RS07570 0.45 +0.3
188,967 + HMPREF1058_RS07570 0.47 -1.0
188,987 - HMPREF1058_RS07570 0.49 +0.1
189,165 - HMPREF1058_RS07570 0.63 -1.0
189,245 + HMPREF1058_RS07570 0.70 -0.6
189,292 - -0.1
189,292 - HMPREF1058_RS07570 0.74 +0.2
189,292 - HMPREF1058_RS07570 0.74 +0.1
189,292 - HMPREF1058_RS07570 0.74 +0.7
189,296 - HMPREF1058_RS07570 0.74 -0.4
189,298 - HMPREF1058_RS07570 0.74 -2.6
189,308 - HMPREF1058_RS07570 0.75 -0.7
189,380 + HMPREF1058_RS07570 0.81 -0.1
189,380 + HMPREF1058_RS07570 0.81 -1.7
189,380 + HMPREF1058_RS07570 0.81 -1.2
189,380 + HMPREF1058_RS07570 0.81 -2.0
189,381 - HMPREF1058_RS07570 0.81 -0.3
189,383 - HMPREF1058_RS07570 0.81 -0.4
189,400 - HMPREF1058_RS07570 0.82 -0.1
189,405 + HMPREF1058_RS07570 0.83 -3.0
189,436 + HMPREF1058_RS07570 0.85 -2.7
189,521 - -1.3
189,590 - -0.7
189,597 + -1.3
189,598 - +0.2
189,732 + -1.9
189,755 - +1.1
189,943 - HMPREF1058_RS07565 0.18 -0.8
190,030 - HMPREF1058_RS07565 0.27 -1.0
190,046 - HMPREF1058_RS07565 0.29 -0.3
190,070 - HMPREF1058_RS07565 0.31 -1.0
190,070 - HMPREF1058_RS07565 0.31 +0.6
190,104 + HMPREF1058_RS07565 0.35 +0.1
190,133 + HMPREF1058_RS07565 0.38 -0.6
190,134 - HMPREF1058_RS07565 0.38 +0.6
190,178 - HMPREF1058_RS07565 0.42 +0.6
190,178 - HMPREF1058_RS07565 0.42 -0.1
190,246 - HMPREF1058_RS07565 0.49 -0.4
190,246 - HMPREF1058_RS07565 0.49 +1.3
190,246 - HMPREF1058_RS07565 0.49 -0.5
190,246 - HMPREF1058_RS07565 0.49 -0.6
190,342 + HMPREF1058_RS07565 0.59 -0.3
190,394 - HMPREF1058_RS07565 0.65 +0.5
190,456 - HMPREF1058_RS07565 0.71 -0.4
190,467 - HMPREF1058_RS07565 0.72 -0.6
190,549 + HMPREF1058_RS07565 0.81 +0.0
190,550 - HMPREF1058_RS07565 0.81 +0.2
190,560 + HMPREF1058_RS07565 0.82 -0.3
190,561 - HMPREF1058_RS07565 0.82 -0.7
190,598 + +0.1
190,599 - HMPREF1058_RS07565 0.86 +0.5
190,601 + HMPREF1058_RS07565 0.86 -0.9
190,605 + HMPREF1058_RS07565 0.87 +0.7

Or see this region's nucleotide sequence