Experiment: Brucella 1x (C) complex media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS06470 and HMPREF1058_RS20890 are separated by 170 nucleotides HMPREF1058_RS20890 and HMPREF1058_RS21475 overlap by 1 nucleotides HMPREF1058_RS21475 and HMPREF1058_RS06460 are separated by 211 nucleotides HMPREF1058_RS06460 and HMPREF1058_RS06455 are separated by 351 nucleotides HMPREF1058_RS06455 and HMPREF1058_RS06450 are separated by 223 nucleotides
HMPREF1058_RS06470: HMPREF1058_RS06470 - hypothetical protein, at 472,678 to 472,992
_RS06470
HMPREF1058_RS20890: HMPREF1058_RS20890 - N-acetylmuramoyl-L-alanine amidase, at 473,163 to 473,579
_RS20890
HMPREF1058_RS21475: HMPREF1058_RS21475 - smalltalk protein, at 473,579 to 473,683
_RS21475
HMPREF1058_RS06460: HMPREF1058_RS06460 - hypothetical protein, at 473,895 to 474,383
_RS06460
HMPREF1058_RS06455: HMPREF1058_RS06455 - DUF4248 domain-containing protein, at 474,735 to 474,953
_RS06455
HMPREF1058_RS06450: HMPREF1058_RS06450 - hypothetical protein, at 475,177 to 476,253
_RS06450
Position (kb) 473
474
475 Strain fitness (log2 ratio) -1
0
1
2 at 472.946 kb on + strand, within HMPREF1058_RS06470 at 472.986 kb on - strand at 473.019 kb on - strand at 473.063 kb on + strand at 473.063 kb on + strand at 473.089 kb on - strand at 473.236 kb on - strand, within HMPREF1058_RS20890 at 473.286 kb on - strand, within HMPREF1058_RS20890 at 473.446 kb on + strand, within HMPREF1058_RS20890 at 473.447 kb on - strand, within HMPREF1058_RS20890 at 473.459 kb on + strand, within HMPREF1058_RS20890 at 473.460 kb on + strand, within HMPREF1058_RS20890 at 473.460 kb on + strand, within HMPREF1058_RS20890 at 473.461 kb on - strand, within HMPREF1058_RS20890 at 473.461 kb on - strand, within HMPREF1058_RS20890 at 473.461 kb on - strand, within HMPREF1058_RS20890 at 473.461 kb on - strand, within HMPREF1058_RS20890 at 473.461 kb on - strand, within HMPREF1058_RS20890 at 473.584 kb on + strand at 473.584 kb on + strand at 473.584 kb on + strand at 473.637 kb on - strand, within HMPREF1058_RS21475 at 473.711 kb on - strand at 473.722 kb on - strand at 473.830 kb on + strand at 473.882 kb on + strand at 474.097 kb on + strand, within HMPREF1058_RS06460 at 474.122 kb on + strand, within HMPREF1058_RS06460 at 474.122 kb on + strand, within HMPREF1058_RS06460 at 474.123 kb on - strand, within HMPREF1058_RS06460 at 474.123 kb on - strand, within HMPREF1058_RS06460 at 474.373 kb on + strand at 474.373 kb on + strand at 474.374 kb on - strand at 474.512 kb on - strand at 474.547 kb on + strand at 474.592 kb on + strand at 474.726 kb on - strand at 474.751 kb on + strand at 474.787 kb on - strand, within HMPREF1058_RS06455 at 474.903 kb on + strand, within HMPREF1058_RS06455 at 474.903 kb on + strand, within HMPREF1058_RS06455 at 474.904 kb on - strand, within HMPREF1058_RS06455 at 474.904 kb on - strand, within HMPREF1058_RS06455 at 475.074 kb on + strand at 475.075 kb on - strand at 475.076 kb on + strand at 475.116 kb on - strand at 475.117 kb on + strand at 475.118 kb on - strand at 475.186 kb on + strand at 475.352 kb on + strand, within HMPREF1058_RS06450 at 475.352 kb on + strand, within HMPREF1058_RS06450 at 475.353 kb on - strand, within HMPREF1058_RS06450 at 475.354 kb on + strand, within HMPREF1058_RS06450
Per-strain Table
Position Strand Gene LocusTag Fraction Brucella 1x (C) complex media remove 472,946 + HMPREF1058_RS06470 0.85 -0.1 472,986 - +0.2 473,019 - -0.1 473,063 + +0.2 473,063 + +0.2 473,089 - +1.7 473,236 - HMPREF1058_RS20890 0.18 +1.0 473,286 - HMPREF1058_RS20890 0.29 -0.3 473,446 + HMPREF1058_RS20890 0.68 +0.5 473,447 - HMPREF1058_RS20890 0.68 -0.7 473,459 + HMPREF1058_RS20890 0.71 +0.0 473,460 + HMPREF1058_RS20890 0.71 +1.8 473,460 + HMPREF1058_RS20890 0.71 +0.4 473,461 - HMPREF1058_RS20890 0.71 -1.2 473,461 - HMPREF1058_RS20890 0.71 +0.2 473,461 - HMPREF1058_RS20890 0.71 +0.0 473,461 - HMPREF1058_RS20890 0.71 -0.6 473,461 - HMPREF1058_RS20890 0.71 +0.6 473,584 + +0.3 473,584 + -0.6 473,584 + +0.1 473,637 - HMPREF1058_RS21475 0.55 -0.5 473,711 - +0.4 473,722 - -0.7 473,830 + -0.2 473,882 + +0.1 474,097 + HMPREF1058_RS06460 0.41 -0.2 474,122 + HMPREF1058_RS06460 0.46 -0.6 474,122 + HMPREF1058_RS06460 0.46 +0.2 474,123 - HMPREF1058_RS06460 0.47 -1.3 474,123 - HMPREF1058_RS06460 0.47 -1.6 474,373 + -0.3 474,373 + -0.0 474,374 - -0.1 474,512 - +0.7 474,547 + -0.7 474,592 + +0.1 474,726 - +0.2 474,751 + -1.3 474,787 - HMPREF1058_RS06455 0.24 -0.8 474,903 + HMPREF1058_RS06455 0.77 +0.3 474,903 + HMPREF1058_RS06455 0.77 -0.7 474,904 - HMPREF1058_RS06455 0.77 -0.0 474,904 - HMPREF1058_RS06455 0.77 +0.9 475,074 + -0.4 475,075 - +0.3 475,076 + +1.7 475,116 - +0.1 475,117 + -0.8 475,118 - +0.5 475,186 + +0.5 475,352 + HMPREF1058_RS06450 0.16 -1.2 475,352 + HMPREF1058_RS06450 0.16 +0.4 475,353 - HMPREF1058_RS06450 0.16 -0.4 475,354 + HMPREF1058_RS06450 0.16 +1.7
Or see this region's nucleotide sequence