Experiment: Brucella 1x (C) complex media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS06010 and HMPREF1058_RS06005 are separated by 88 nucleotides HMPREF1058_RS06005 and HMPREF1058_RS06000 are separated by 218 nucleotides
HMPREF1058_RS06010: HMPREF1058_RS06010 - efflux transporter outer membrane subunit, at 26,820 to 28,277
_RS06010
HMPREF1058_RS06005: HMPREF1058_RS06005 - GlsB/YeaQ/YmgE family stress response membrane protein, at 28,366 to 28,617
_RS06005
HMPREF1058_RS06000: HMPREF1058_RS06000 - efflux RND transporter periplasmic adaptor subunit, at 28,836 to 29,882
_RS06000
Position (kb) 28
29 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 27.400 kb on + strand, within HMPREF1058_RS06010 at 27.467 kb on - strand, within HMPREF1058_RS06010 at 27.521 kb on - strand, within HMPREF1058_RS06010 at 27.521 kb on - strand, within HMPREF1058_RS06010 at 27.598 kb on + strand, within HMPREF1058_RS06010 at 27.599 kb on - strand, within HMPREF1058_RS06010 at 27.629 kb on - strand, within HMPREF1058_RS06010 at 27.680 kb on + strand, within HMPREF1058_RS06010 at 27.743 kb on - strand, within HMPREF1058_RS06010 at 27.743 kb on - strand, within HMPREF1058_RS06010 at 27.763 kb on + strand, within HMPREF1058_RS06010 at 27.764 kb on - strand, within HMPREF1058_RS06010 at 27.766 kb on + strand, within HMPREF1058_RS06010 at 27.784 kb on + strand, within HMPREF1058_RS06010 at 27.908 kb on + strand, within HMPREF1058_RS06010 at 27.920 kb on + strand, within HMPREF1058_RS06010 at 27.921 kb on - strand, within HMPREF1058_RS06010 at 27.940 kb on + strand, within HMPREF1058_RS06010 at 27.989 kb on - strand, within HMPREF1058_RS06010 at 28.018 kb on - strand, within HMPREF1058_RS06010 at 28.027 kb on + strand, within HMPREF1058_RS06010 at 28.110 kb on - strand, within HMPREF1058_RS06010 at 28.110 kb on - strand, within HMPREF1058_RS06010 at 28.114 kb on - strand, within HMPREF1058_RS06010 at 28.238 kb on + strand at 28.239 kb on - strand at 28.258 kb on + strand at 28.276 kb on - strand at 28.282 kb on + strand at 28.283 kb on - strand at 28.283 kb on - strand at 28.360 kb on + strand at 28.362 kb on + strand at 28.415 kb on - strand, within HMPREF1058_RS06005 at 28.416 kb on + strand, within HMPREF1058_RS06005 at 28.417 kb on - strand, within HMPREF1058_RS06005 at 28.585 kb on - strand, within HMPREF1058_RS06005 at 28.597 kb on - strand at 28.602 kb on - strand at 28.617 kb on + strand at 28.618 kb on - strand at 28.639 kb on - strand at 28.640 kb on + strand at 28.645 kb on - strand at 28.694 kb on + strand at 28.836 kb on - strand at 28.849 kb on + strand at 28.933 kb on + strand at 29.056 kb on + strand, within HMPREF1058_RS06000 at 29.057 kb on - strand, within HMPREF1058_RS06000 at 29.057 kb on - strand, within HMPREF1058_RS06000 at 29.057 kb on - strand, within HMPREF1058_RS06000 at 29.058 kb on + strand, within HMPREF1058_RS06000 at 29.149 kb on - strand, within HMPREF1058_RS06000 at 29.149 kb on - strand, within HMPREF1058_RS06000 at 29.191 kb on - strand, within HMPREF1058_RS06000 at 29.216 kb on + strand, within HMPREF1058_RS06000 at 29.216 kb on + strand, within HMPREF1058_RS06000 at 29.242 kb on - strand, within HMPREF1058_RS06000 at 29.278 kb on - strand, within HMPREF1058_RS06000 at 29.334 kb on + strand, within HMPREF1058_RS06000 at 29.337 kb on - strand, within HMPREF1058_RS06000 at 29.392 kb on + strand, within HMPREF1058_RS06000 at 29.393 kb on - strand, within HMPREF1058_RS06000 at 29.456 kb on + strand at 29.462 kb on - strand, within HMPREF1058_RS06000 at 29.495 kb on - strand, within HMPREF1058_RS06000 at 29.496 kb on + strand, within HMPREF1058_RS06000 at 29.504 kb on + strand, within HMPREF1058_RS06000 at 29.566 kb on + strand, within HMPREF1058_RS06000 at 29.600 kb on + strand, within HMPREF1058_RS06000 at 29.600 kb on + strand, within HMPREF1058_RS06000 at 29.601 kb on - strand, within HMPREF1058_RS06000
Per-strain Table
Position Strand Gene LocusTag Fraction Brucella 1x (C) complex media remove 27,400 + HMPREF1058_RS06010 0.40 +1.2 27,467 - HMPREF1058_RS06010 0.44 -0.5 27,521 - HMPREF1058_RS06010 0.48 +0.2 27,521 - HMPREF1058_RS06010 0.48 -0.8 27,598 + HMPREF1058_RS06010 0.53 +0.3 27,599 - HMPREF1058_RS06010 0.53 -0.3 27,629 - HMPREF1058_RS06010 0.55 -1.1 27,680 + HMPREF1058_RS06010 0.59 -0.8 27,743 - HMPREF1058_RS06010 0.63 -0.1 27,743 - HMPREF1058_RS06010 0.63 +1.3 27,763 + HMPREF1058_RS06010 0.65 +0.7 27,764 - HMPREF1058_RS06010 0.65 -0.6 27,766 + HMPREF1058_RS06010 0.65 -2.5 27,784 + HMPREF1058_RS06010 0.66 -0.6 27,908 + HMPREF1058_RS06010 0.75 -0.8 27,920 + HMPREF1058_RS06010 0.75 -0.5 27,921 - HMPREF1058_RS06010 0.76 -0.1 27,940 + HMPREF1058_RS06010 0.77 +0.3 27,989 - HMPREF1058_RS06010 0.80 -0.6 28,018 - HMPREF1058_RS06010 0.82 -0.2 28,027 + HMPREF1058_RS06010 0.83 -0.4 28,110 - HMPREF1058_RS06010 0.88 -1.0 28,110 - HMPREF1058_RS06010 0.88 -0.2 28,114 - HMPREF1058_RS06010 0.89 -0.3 28,238 + +0.8 28,239 - -1.9 28,258 + -3.2 28,276 - -0.5 28,282 + +1.1 28,283 - +2.5 28,283 - -0.2 28,360 + -1.2 28,362 + +0.4 28,415 - HMPREF1058_RS06005 0.19 +0.4 28,416 + HMPREF1058_RS06005 0.20 +0.4 28,417 - HMPREF1058_RS06005 0.20 -1.8 28,585 - HMPREF1058_RS06005 0.87 -0.9 28,597 - -1.1 28,602 - +0.4 28,617 + +0.7 28,618 - +0.0 28,639 - -0.2 28,640 + -1.6 28,645 - -0.2 28,694 + -0.5 28,836 - -0.9 28,849 + +0.1 28,933 + +0.0 29,056 + HMPREF1058_RS06000 0.21 -1.9 29,057 - HMPREF1058_RS06000 0.21 +0.5 29,057 - HMPREF1058_RS06000 0.21 +1.2 29,057 - HMPREF1058_RS06000 0.21 -0.5 29,058 + HMPREF1058_RS06000 0.21 +0.1 29,149 - HMPREF1058_RS06000 0.30 +0.2 29,149 - HMPREF1058_RS06000 0.30 -0.4 29,191 - HMPREF1058_RS06000 0.34 -0.7 29,216 + HMPREF1058_RS06000 0.36 -0.2 29,216 + HMPREF1058_RS06000 0.36 -0.8 29,242 - HMPREF1058_RS06000 0.39 +0.1 29,278 - HMPREF1058_RS06000 0.42 -0.4 29,334 + HMPREF1058_RS06000 0.48 +0.3 29,337 - HMPREF1058_RS06000 0.48 +0.2 29,392 + HMPREF1058_RS06000 0.53 -1.4 29,393 - HMPREF1058_RS06000 0.53 -0.6 29,456 + -1.1 29,462 - HMPREF1058_RS06000 0.60 +0.2 29,495 - HMPREF1058_RS06000 0.63 -0.1 29,496 + HMPREF1058_RS06000 0.63 -1.1 29,504 + HMPREF1058_RS06000 0.64 -0.2 29,566 + HMPREF1058_RS06000 0.70 -2.2 29,600 + HMPREF1058_RS06000 0.73 -0.7 29,600 + HMPREF1058_RS06000 0.73 +1.1 29,601 - HMPREF1058_RS06000 0.73 -0.2
Or see this region's nucleotide sequence