Experiment: Brucella 1x (C) complex media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS05930 and HMPREF1058_RS05925 are separated by 201 nucleotides HMPREF1058_RS05925 and HMPREF1058_RS05920 are separated by 21 nucleotides HMPREF1058_RS05920 and HMPREF1058_RS05915 overlap by 10 nucleotides HMPREF1058_RS05915 and HMPREF1058_RS05910 are separated by 186 nucleotides
HMPREF1058_RS05930: HMPREF1058_RS05930 - MFS transporter, at 46,843 to 48,120
_RS05930
HMPREF1058_RS05925: HMPREF1058_RS05925 - DUF5024 domain-containing protein, at 48,322 to 48,936
_RS05925
HMPREF1058_RS05920: HMPREF1058_RS05920 - hypothetical protein, at 48,958 to 49,524
_RS05920
HMPREF1058_RS05915: HMPREF1058_RS05915 - sigma-70 family RNA polymerase sigma factor, at 49,515 to 49,985
_RS05915
HMPREF1058_RS05910: HMPREF1058_RS05910 - galactose mutarotase, at 50,172 to 51,305
_RS05910
Position (kb) 48
49
50 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 47.982 kb on - strand, within HMPREF1058_RS05930 at 47.993 kb on - strand at 47.993 kb on - strand at 48.023 kb on + strand at 48.024 kb on - strand at 48.039 kb on + strand at 48.131 kb on + strand at 48.145 kb on + strand at 48.150 kb on + strand at 48.263 kb on + strand at 48.273 kb on - strand at 48.288 kb on - strand at 48.291 kb on - strand at 48.419 kb on - strand, within HMPREF1058_RS05925 at 48.551 kb on - strand, within HMPREF1058_RS05925 at 48.551 kb on - strand, within HMPREF1058_RS05925 at 48.606 kb on + strand, within HMPREF1058_RS05925 at 48.721 kb on + strand, within HMPREF1058_RS05925 at 49.131 kb on + strand, within HMPREF1058_RS05920 at 49.363 kb on - strand, within HMPREF1058_RS05920 at 49.363 kb on - strand, within HMPREF1058_RS05920 at 49.415 kb on - strand, within HMPREF1058_RS05920 at 49.415 kb on - strand, within HMPREF1058_RS05920 at 49.443 kb on + strand at 49.530 kb on - strand at 49.530 kb on - strand at 49.542 kb on - strand at 49.542 kb on - strand at 49.665 kb on - strand, within HMPREF1058_RS05915 at 49.692 kb on + strand, within HMPREF1058_RS05915 at 49.696 kb on - strand, within HMPREF1058_RS05915 at 49.715 kb on + strand, within HMPREF1058_RS05915 at 49.715 kb on + strand, within HMPREF1058_RS05915 at 50.040 kb on + strand at 50.041 kb on - strand at 50.046 kb on + strand at 50.104 kb on + strand at 50.124 kb on + strand at 50.125 kb on - strand at 50.125 kb on - strand at 50.126 kb on + strand at 50.126 kb on + strand at 50.126 kb on + strand at 50.127 kb on - strand at 50.127 kb on - strand at 50.127 kb on - strand at 50.129 kb on - strand at 50.183 kb on + strand at 50.183 kb on + strand at 50.192 kb on + strand at 50.192 kb on + strand at 50.229 kb on - strand at 50.229 kb on - strand at 50.229 kb on - strand at 50.307 kb on + strand, within HMPREF1058_RS05910 at 50.308 kb on - strand, within HMPREF1058_RS05910 at 50.318 kb on + strand, within HMPREF1058_RS05910 at 50.318 kb on + strand, within HMPREF1058_RS05910 at 50.413 kb on + strand, within HMPREF1058_RS05910 at 50.413 kb on + strand, within HMPREF1058_RS05910 at 50.414 kb on - strand, within HMPREF1058_RS05910 at 50.414 kb on - strand, within HMPREF1058_RS05910 at 50.436 kb on - strand, within HMPREF1058_RS05910 at 50.436 kb on - strand, within HMPREF1058_RS05910 at 50.436 kb on - strand, within HMPREF1058_RS05910 at 50.466 kb on - strand at 50.466 kb on - strand, within HMPREF1058_RS05910 at 50.474 kb on - strand, within HMPREF1058_RS05910 at 50.513 kb on + strand, within HMPREF1058_RS05910 at 50.514 kb on - strand, within HMPREF1058_RS05910 at 50.514 kb on - strand, within HMPREF1058_RS05910
Per-strain Table
Position Strand Gene LocusTag Fraction Brucella 1x (C) complex media remove 47,982 - HMPREF1058_RS05930 0.89 +0.8 47,993 - -0.2 47,993 - -0.3 48,023 + +0.7 48,024 - -0.1 48,039 + -0.8 48,131 + -0.3 48,145 + -0.5 48,150 + -0.2 48,263 + +0.3 48,273 - +0.5 48,288 - -0.2 48,291 - +0.6 48,419 - HMPREF1058_RS05925 0.16 +1.7 48,551 - HMPREF1058_RS05925 0.37 +0.6 48,551 - HMPREF1058_RS05925 0.37 +0.1 48,606 + HMPREF1058_RS05925 0.46 +1.7 48,721 + HMPREF1058_RS05925 0.65 +0.3 49,131 + HMPREF1058_RS05920 0.31 +1.1 49,363 - HMPREF1058_RS05920 0.71 -2.2 49,363 - HMPREF1058_RS05920 0.71 -0.5 49,415 - HMPREF1058_RS05920 0.81 +0.4 49,415 - HMPREF1058_RS05920 0.81 -2.5 49,443 + -1.3 49,530 - -1.2 49,530 - +0.2 49,542 - +0.2 49,542 - -1.5 49,665 - HMPREF1058_RS05915 0.32 -0.7 49,692 + HMPREF1058_RS05915 0.38 -0.3 49,696 - HMPREF1058_RS05915 0.38 -3.3 49,715 + HMPREF1058_RS05915 0.42 +0.6 49,715 + HMPREF1058_RS05915 0.42 -1.3 50,040 + +0.7 50,041 - +0.3 50,046 + +0.0 50,104 + -0.3 50,124 + +2.2 50,125 - -0.3 50,125 - -0.7 50,126 + -0.8 50,126 + -2.1 50,126 + +0.1 50,127 - +1.0 50,127 - +0.9 50,127 - +0.3 50,129 - +0.3 50,183 + +0.7 50,183 + -0.5 50,192 + -1.3 50,192 + -0.1 50,229 - +0.7 50,229 - +0.4 50,229 - +1.0 50,307 + HMPREF1058_RS05910 0.12 +0.3 50,308 - HMPREF1058_RS05910 0.12 -0.9 50,318 + HMPREF1058_RS05910 0.13 -0.3 50,318 + HMPREF1058_RS05910 0.13 -0.3 50,413 + HMPREF1058_RS05910 0.21 -0.3 50,413 + HMPREF1058_RS05910 0.21 +0.1 50,414 - HMPREF1058_RS05910 0.21 -0.9 50,414 - HMPREF1058_RS05910 0.21 -0.3 50,436 - HMPREF1058_RS05910 0.23 +1.1 50,436 - HMPREF1058_RS05910 0.23 +0.1 50,436 - HMPREF1058_RS05910 0.23 -0.0 50,466 - -0.1 50,466 - HMPREF1058_RS05910 0.26 +0.0 50,474 - HMPREF1058_RS05910 0.27 -0.2 50,513 + HMPREF1058_RS05910 0.30 +0.7 50,514 - HMPREF1058_RS05910 0.30 -0.1 50,514 - HMPREF1058_RS05910 0.30 +0.9
Or see this region's nucleotide sequence