Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS03305

Experiment: Brucella 1x (C) complex media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS03310 and HMPREF1058_RS03305 are separated by 32 nucleotidesHMPREF1058_RS03305 and HMPREF1058_RS03300 are separated by 108 nucleotides HMPREF1058_RS03310: HMPREF1058_RS03310 - carboxynorspermidine decarboxylase, at 308,926 to 310,089 _RS03310 HMPREF1058_RS03305: HMPREF1058_RS03305 - UvrD-helicase domain-containing protein, at 310,122 to 312,512 _RS03305 HMPREF1058_RS03300: HMPREF1058_RS03300 - superoxide dismutase, at 312,621 to 313,238 _RS03300 Position (kb) 310 311 312 313Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 309.125 kb on + strand, within HMPREF1058_RS03310at 309.126 kb on - strand, within HMPREF1058_RS03310at 309.316 kb on + strand, within HMPREF1058_RS03310at 309.319 kb on - strand, within HMPREF1058_RS03310at 309.319 kb on - strand, within HMPREF1058_RS03310at 309.526 kb on + strand, within HMPREF1058_RS03310at 309.527 kb on - strand, within HMPREF1058_RS03310at 309.527 kb on - strand, within HMPREF1058_RS03310at 309.541 kb on - strand, within HMPREF1058_RS03310at 309.747 kb on + strand, within HMPREF1058_RS03310at 309.752 kb on + strand, within HMPREF1058_RS03310at 309.780 kb on + strand, within HMPREF1058_RS03310at 309.787 kb on + strand, within HMPREF1058_RS03310at 309.788 kb on - strand, within HMPREF1058_RS03310at 309.789 kb on + strand, within HMPREF1058_RS03310at 309.845 kb on + strand, within HMPREF1058_RS03310at 309.846 kb on - strand, within HMPREF1058_RS03310at 309.893 kb on + strand, within HMPREF1058_RS03310at 309.912 kb on + strand, within HMPREF1058_RS03310at 309.912 kb on + strand, within HMPREF1058_RS03310at 309.913 kb on - strand, within HMPREF1058_RS03310at 310.052 kb on - strandat 310.052 kb on - strandat 310.081 kb on - strandat 310.354 kb on - strandat 310.356 kb on - strandat 310.368 kb on - strand, within HMPREF1058_RS03305at 310.581 kb on - strand, within HMPREF1058_RS03305at 310.581 kb on - strand, within HMPREF1058_RS03305at 310.629 kb on - strand, within HMPREF1058_RS03305at 310.655 kb on - strand, within HMPREF1058_RS03305at 311.122 kb on - strand, within HMPREF1058_RS03305at 311.144 kb on + strand, within HMPREF1058_RS03305at 311.234 kb on + strand, within HMPREF1058_RS03305at 311.234 kb on + strand, within HMPREF1058_RS03305at 311.317 kb on + strand, within HMPREF1058_RS03305at 311.322 kb on + strand, within HMPREF1058_RS03305at 311.323 kb on - strand, within HMPREF1058_RS03305at 311.323 kb on - strand, within HMPREF1058_RS03305at 311.377 kb on + strand, within HMPREF1058_RS03305at 311.689 kb on + strand, within HMPREF1058_RS03305at 311.689 kb on + strand, within HMPREF1058_RS03305at 311.690 kb on - strand, within HMPREF1058_RS03305at 311.690 kb on - strand, within HMPREF1058_RS03305at 311.690 kb on - strand, within HMPREF1058_RS03305at 311.710 kb on - strand, within HMPREF1058_RS03305at 311.711 kb on + strand, within HMPREF1058_RS03305at 311.712 kb on - strand, within HMPREF1058_RS03305at 311.712 kb on - strand, within HMPREF1058_RS03305at 311.744 kb on + strand, within HMPREF1058_RS03305at 311.872 kb on + strand, within HMPREF1058_RS03305at 311.911 kb on + strand, within HMPREF1058_RS03305at 311.915 kb on + strand, within HMPREF1058_RS03305at 311.915 kb on + strand, within HMPREF1058_RS03305at 311.916 kb on - strand, within HMPREF1058_RS03305at 312.019 kb on + strand, within HMPREF1058_RS03305at 312.025 kb on + strandat 312.026 kb on - strand, within HMPREF1058_RS03305at 312.047 kb on - strand, within HMPREF1058_RS03305at 312.047 kb on - strand, within HMPREF1058_RS03305at 312.096 kb on + strand, within HMPREF1058_RS03305at 312.189 kb on - strand, within HMPREF1058_RS03305at 312.201 kb on - strand, within HMPREF1058_RS03305at 312.302 kb on + strandat 312.303 kb on - strandat 312.365 kb on + strandat 312.395 kb on + strandat 312.499 kb on - strandat 312.588 kb on - strandat 312.627 kb on - strandat 312.628 kb on + strandat 312.629 kb on - strandat 312.643 kb on + strandat 312.709 kb on + strand, within HMPREF1058_RS03300at 312.725 kb on + strand, within HMPREF1058_RS03300at 312.728 kb on - strand, within HMPREF1058_RS03300at 312.732 kb on + strand, within HMPREF1058_RS03300at 312.763 kb on + strand, within HMPREF1058_RS03300at 312.763 kb on + strand, within HMPREF1058_RS03300at 312.850 kb on + strand, within HMPREF1058_RS03300at 312.882 kb on - strand, within HMPREF1058_RS03300at 312.886 kb on + strand, within HMPREF1058_RS03300at 313.063 kb on + strand, within HMPREF1058_RS03300at 313.063 kb on + strand, within HMPREF1058_RS03300at 313.064 kb on - strand, within HMPREF1058_RS03300at 313.064 kb on - strand, within HMPREF1058_RS03300at 313.068 kb on - strand, within HMPREF1058_RS03300at 313.068 kb on - strand, within HMPREF1058_RS03300at 313.135 kb on + strandat 313.136 kb on - strand, within HMPREF1058_RS03300at 313.149 kb on + strand, within HMPREF1058_RS03300at 313.149 kb on + strand, within HMPREF1058_RS03300at 313.150 kb on - strand, within HMPREF1058_RS03300at 313.185 kb on - strandat 313.219 kb on + strandat 313.219 kb on + strandat 313.220 kb on - strandat 313.235 kb on - strandat 313.235 kb on - strandat 313.237 kb on - strandat 313.252 kb on + strandat 313.253 kb on - strandat 313.254 kb on + strandat 313.254 kb on + strandat 313.254 kb on + strandat 313.254 kb on + strandat 313.261 kb on + strandat 313.261 kb on + strandat 313.262 kb on - strandat 313.325 kb on + strandat 313.325 kb on + strandat 313.335 kb on - strandat 313.335 kb on - strandat 313.358 kb on + strandat 313.359 kb on - strandat 313.378 kb on + strandat 313.409 kb on + strandat 313.425 kb on - strandat 313.461 kb on + strandat 313.462 kb on - strandat 313.505 kb on + strandat 313.507 kb on + strandat 313.507 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Brucella 1x (C) complex media
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309,125 + HMPREF1058_RS03310 0.17 +0.3
309,126 - HMPREF1058_RS03310 0.17 +0.2
309,316 + HMPREF1058_RS03310 0.34 -0.6
309,319 - HMPREF1058_RS03310 0.34 -1.0
309,319 - HMPREF1058_RS03310 0.34 +0.6
309,526 + HMPREF1058_RS03310 0.52 -0.2
309,527 - HMPREF1058_RS03310 0.52 +0.3
309,527 - HMPREF1058_RS03310 0.52 +0.4
309,541 - HMPREF1058_RS03310 0.53 +0.2
309,747 + HMPREF1058_RS03310 0.71 -0.1
309,752 + HMPREF1058_RS03310 0.71 -0.8
309,780 + HMPREF1058_RS03310 0.73 +0.3
309,787 + HMPREF1058_RS03310 0.74 +0.1
309,788 - HMPREF1058_RS03310 0.74 +0.1
309,789 + HMPREF1058_RS03310 0.74 -0.4
309,845 + HMPREF1058_RS03310 0.79 +0.9
309,846 - HMPREF1058_RS03310 0.79 -1.1
309,893 + HMPREF1058_RS03310 0.83 +0.1
309,912 + HMPREF1058_RS03310 0.85 +0.1
309,912 + HMPREF1058_RS03310 0.85 +0.7
309,913 - HMPREF1058_RS03310 0.85 +1.3
310,052 - +0.8
310,052 - +1.7
310,081 - -0.7
310,354 - -0.4
310,356 - +0.2
310,368 - HMPREF1058_RS03305 0.10 -0.3
310,581 - HMPREF1058_RS03305 0.19 -1.5
310,581 - HMPREF1058_RS03305 0.19 +0.2
310,629 - HMPREF1058_RS03305 0.21 -0.6
310,655 - HMPREF1058_RS03305 0.22 -0.6
311,122 - HMPREF1058_RS03305 0.42 -1.0
311,144 + HMPREF1058_RS03305 0.43 -0.5
311,234 + HMPREF1058_RS03305 0.47 -1.1
311,234 + HMPREF1058_RS03305 0.47 -1.2
311,317 + HMPREF1058_RS03305 0.50 -1.2
311,322 + HMPREF1058_RS03305 0.50 +0.0
311,323 - HMPREF1058_RS03305 0.50 -0.6
311,323 - HMPREF1058_RS03305 0.50 -1.3
311,377 + HMPREF1058_RS03305 0.52 +0.1
311,689 + HMPREF1058_RS03305 0.66 -1.1
311,689 + HMPREF1058_RS03305 0.66 -1.1
311,690 - HMPREF1058_RS03305 0.66 -0.6
311,690 - HMPREF1058_RS03305 0.66 -1.1
311,690 - HMPREF1058_RS03305 0.66 -0.2
311,710 - HMPREF1058_RS03305 0.66 -2.4
311,711 + HMPREF1058_RS03305 0.66 +2.1
311,712 - HMPREF1058_RS03305 0.66 -3.0
311,712 - HMPREF1058_RS03305 0.66 -0.1
311,744 + HMPREF1058_RS03305 0.68 -2.0
311,872 + HMPREF1058_RS03305 0.73 -0.8
311,911 + HMPREF1058_RS03305 0.75 +0.1
311,915 + HMPREF1058_RS03305 0.75 -0.2
311,915 + HMPREF1058_RS03305 0.75 -2.2
311,916 - HMPREF1058_RS03305 0.75 +0.0
312,019 + HMPREF1058_RS03305 0.79 -1.2
312,025 + -0.5
312,026 - HMPREF1058_RS03305 0.80 -1.3
312,047 - HMPREF1058_RS03305 0.81 -1.4
312,047 - HMPREF1058_RS03305 0.81 -0.9
312,096 + HMPREF1058_RS03305 0.83 -0.5
312,189 - HMPREF1058_RS03305 0.86 -0.3
312,201 - HMPREF1058_RS03305 0.87 -0.8
312,302 + +1.4
312,303 - +0.7
312,365 + -0.1
312,395 + +1.7
312,499 - +0.0
312,588 - -0.3
312,627 - +0.4
312,628 + -0.0
312,629 - +0.1
312,643 + +0.1
312,709 + HMPREF1058_RS03300 0.14 -0.0
312,725 + HMPREF1058_RS03300 0.17 +0.1
312,728 - HMPREF1058_RS03300 0.17 +1.5
312,732 + HMPREF1058_RS03300 0.18 -2.6
312,763 + HMPREF1058_RS03300 0.23 +0.5
312,763 + HMPREF1058_RS03300 0.23 -0.5
312,850 + HMPREF1058_RS03300 0.37 +1.4
312,882 - HMPREF1058_RS03300 0.42 +0.6
312,886 + HMPREF1058_RS03300 0.43 +0.7
313,063 + HMPREF1058_RS03300 0.72 +0.1
313,063 + HMPREF1058_RS03300 0.72 -0.4
313,064 - HMPREF1058_RS03300 0.72 -1.0
313,064 - HMPREF1058_RS03300 0.72 -0.1
313,068 - HMPREF1058_RS03300 0.72 +1.2
313,068 - HMPREF1058_RS03300 0.72 +0.3
313,135 + -0.2
313,136 - HMPREF1058_RS03300 0.83 +0.5
313,149 + HMPREF1058_RS03300 0.85 -0.3
313,149 + HMPREF1058_RS03300 0.85 +1.4
313,150 - HMPREF1058_RS03300 0.86 -0.9
313,185 - +0.1
313,219 + +0.3
313,219 + +0.5
313,220 - -0.1
313,235 - +1.4
313,235 - -0.2
313,237 - -1.0
313,252 + -0.2
313,253 - -0.5
313,254 + -0.2
313,254 + +1.3
313,254 + +0.1
313,254 + +0.8
313,261 + -0.4
313,261 + +1.5
313,262 - +0.4
313,325 + +0.1
313,325 + +0.3
313,335 - -0.4
313,335 - -0.3
313,358 + -0.1
313,359 - -0.9
313,378 + +1.4
313,409 + +0.8
313,425 - -0.2
313,461 + +0.3
313,462 - +0.2
313,505 + -0.4
313,507 + +1.0
313,507 + +0.5

Or see this region's nucleotide sequence