Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS03200

Experiment: Brucella 1x (C) complex media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS03205 and HMPREF1058_RS03200 are separated by 253 nucleotidesHMPREF1058_RS03200 and HMPREF1058_RS03195 are separated by 213 nucleotides HMPREF1058_RS03205: HMPREF1058_RS03205 - glycogen/starch synthase, at 332,461 to 334,131 _RS03205 HMPREF1058_RS03200: HMPREF1058_RS03200 - V-type ATP synthase subunit K, at 334,385 to 334,849 _RS03200 HMPREF1058_RS03195: HMPREF1058_RS03195 - V-type ATP synthase subunit I, at 335,063 to 336,868 _RS03195 Position (kb) 334 335Strain fitness (log2 ratio) -2 -1 0 1 2at 333.420 kb on + strand, within HMPREF1058_RS03205at 333.474 kb on + strand, within HMPREF1058_RS03205at 333.504 kb on + strand, within HMPREF1058_RS03205at 333.504 kb on + strand, within HMPREF1058_RS03205at 333.505 kb on - strand, within HMPREF1058_RS03205at 333.506 kb on + strand, within HMPREF1058_RS03205at 333.506 kb on + strand, within HMPREF1058_RS03205at 333.514 kb on + strand, within HMPREF1058_RS03205at 333.561 kb on + strand, within HMPREF1058_RS03205at 333.561 kb on + strand, within HMPREF1058_RS03205at 333.562 kb on - strand, within HMPREF1058_RS03205at 333.593 kb on - strand, within HMPREF1058_RS03205at 333.630 kb on + strand, within HMPREF1058_RS03205at 333.723 kb on - strand, within HMPREF1058_RS03205at 333.733 kb on - strand, within HMPREF1058_RS03205at 333.802 kb on + strand, within HMPREF1058_RS03205at 333.803 kb on - strand, within HMPREF1058_RS03205at 333.803 kb on - strand, within HMPREF1058_RS03205at 333.853 kb on - strandat 334.072 kb on - strandat 334.078 kb on + strandat 334.078 kb on + strandat 334.078 kb on + strandat 334.078 kb on + strandat 334.078 kb on + strandat 334.079 kb on - strandat 334.079 kb on - strandat 334.099 kb on + strandat 334.102 kb on - strandat 334.102 kb on - strandat 334.102 kb on - strandat 334.203 kb on + strandat 334.240 kb on - strandat 334.435 kb on + strand, within HMPREF1058_RS03200at 334.436 kb on - strand, within HMPREF1058_RS03200at 334.440 kb on + strand, within HMPREF1058_RS03200at 334.472 kb on - strand, within HMPREF1058_RS03200at 334.481 kb on + strand, within HMPREF1058_RS03200at 334.482 kb on - strand, within HMPREF1058_RS03200at 334.486 kb on + strand, within HMPREF1058_RS03200at 334.556 kb on + strand, within HMPREF1058_RS03200at 334.668 kb on + strand, within HMPREF1058_RS03200at 334.668 kb on + strand, within HMPREF1058_RS03200at 334.748 kb on - strand, within HMPREF1058_RS03200at 334.770 kb on - strand, within HMPREF1058_RS03200at 334.807 kb on + strandat 334.807 kb on + strandat 334.808 kb on - strandat 334.849 kb on + strandat 334.865 kb on - strandat 334.947 kb on + strandat 334.948 kb on - strandat 334.948 kb on - strandat 334.950 kb on + strandat 334.951 kb on - strandat 334.951 kb on - strandat 334.951 kb on - strandat 335.168 kb on - strandat 335.185 kb on + strandat 335.185 kb on + strandat 335.185 kb on + strandat 335.195 kb on + strandat 335.273 kb on + strand, within HMPREF1058_RS03195at 335.288 kb on - strand, within HMPREF1058_RS03195at 335.322 kb on + strand, within HMPREF1058_RS03195at 335.323 kb on - strand, within HMPREF1058_RS03195at 335.512 kb on + strand, within HMPREF1058_RS03195at 335.513 kb on - strand, within HMPREF1058_RS03195at 335.516 kb on + strand, within HMPREF1058_RS03195at 335.523 kb on - strand, within HMPREF1058_RS03195at 335.553 kb on + strand, within HMPREF1058_RS03195at 335.608 kb on + strand, within HMPREF1058_RS03195at 335.608 kb on + strand, within HMPREF1058_RS03195at 335.641 kb on + strand, within HMPREF1058_RS03195at 335.758 kb on + strand, within HMPREF1058_RS03195at 335.758 kb on + strand, within HMPREF1058_RS03195at 335.828 kb on - strand, within HMPREF1058_RS03195at 335.828 kb on - strand, within HMPREF1058_RS03195

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Per-strain Table

Position Strand Gene LocusTag Fraction Brucella 1x (C) complex media
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333,420 + HMPREF1058_RS03205 0.57 +0.0
333,474 + HMPREF1058_RS03205 0.61 -0.5
333,504 + HMPREF1058_RS03205 0.62 +0.9
333,504 + HMPREF1058_RS03205 0.62 +0.7
333,505 - HMPREF1058_RS03205 0.62 +1.5
333,506 + HMPREF1058_RS03205 0.63 +0.8
333,506 + HMPREF1058_RS03205 0.63 -1.3
333,514 + HMPREF1058_RS03205 0.63 +1.3
333,561 + HMPREF1058_RS03205 0.66 +0.7
333,561 + HMPREF1058_RS03205 0.66 -0.8
333,562 - HMPREF1058_RS03205 0.66 -2.0
333,593 - HMPREF1058_RS03205 0.68 +0.2
333,630 + HMPREF1058_RS03205 0.70 +0.1
333,723 - HMPREF1058_RS03205 0.76 -0.2
333,733 - HMPREF1058_RS03205 0.76 -1.4
333,802 + HMPREF1058_RS03205 0.80 -0.5
333,803 - HMPREF1058_RS03205 0.80 +0.9
333,803 - HMPREF1058_RS03205 0.80 +0.8
333,853 - +0.1
334,072 - -1.0
334,078 + -0.1
334,078 + +0.3
334,078 + -0.4
334,078 + -0.5
334,078 + -1.5
334,079 - -0.2
334,079 - -0.0
334,099 + -1.3
334,102 - -0.5
334,102 - -0.7
334,102 - +0.6
334,203 + -0.2
334,240 - +0.2
334,435 + HMPREF1058_RS03200 0.11 +2.7
334,436 - HMPREF1058_RS03200 0.11 -2.6
334,440 + HMPREF1058_RS03200 0.12 -1.0
334,472 - HMPREF1058_RS03200 0.19 -0.0
334,481 + HMPREF1058_RS03200 0.21 +0.5
334,482 - HMPREF1058_RS03200 0.21 -0.7
334,486 + HMPREF1058_RS03200 0.22 +1.0
334,556 + HMPREF1058_RS03200 0.37 -0.6
334,668 + HMPREF1058_RS03200 0.61 -1.9
334,668 + HMPREF1058_RS03200 0.61 -0.8
334,748 - HMPREF1058_RS03200 0.78 -0.3
334,770 - HMPREF1058_RS03200 0.83 -0.4
334,807 + +1.9
334,807 + +0.7
334,808 - -0.8
334,849 + +1.5
334,865 - -2.7
334,947 + +0.8
334,948 - -0.3
334,948 - -0.2
334,950 + +0.4
334,951 - -1.9
334,951 - -0.1
334,951 - -0.5
335,168 - -1.3
335,185 + +0.1
335,185 + -0.7
335,185 + -0.6
335,195 + -0.1
335,273 + HMPREF1058_RS03195 0.12 +0.0
335,288 - HMPREF1058_RS03195 0.12 -1.6
335,322 + HMPREF1058_RS03195 0.14 +0.4
335,323 - HMPREF1058_RS03195 0.14 +0.7
335,512 + HMPREF1058_RS03195 0.25 +1.1
335,513 - HMPREF1058_RS03195 0.25 +2.1
335,516 + HMPREF1058_RS03195 0.25 -0.3
335,523 - HMPREF1058_RS03195 0.25 -0.5
335,553 + HMPREF1058_RS03195 0.27 +2.3
335,608 + HMPREF1058_RS03195 0.30 +0.4
335,608 + HMPREF1058_RS03195 0.30 +0.4
335,641 + HMPREF1058_RS03195 0.32 -1.5
335,758 + HMPREF1058_RS03195 0.38 +0.4
335,758 + HMPREF1058_RS03195 0.38 -0.3
335,828 - HMPREF1058_RS03195 0.42 -1.5
335,828 - HMPREF1058_RS03195 0.42 -0.5

Or see this region's nucleotide sequence