Experiment: Brucella 1x (C) complex media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS01735 and HMPREF1058_RS01730 are separated by 14 nucleotides HMPREF1058_RS01730 and HMPREF1058_RS01725 are separated by 106 nucleotides HMPREF1058_RS01725 and HMPREF1058_RS01720 are separated by 63 nucleotides HMPREF1058_RS01720 and HMPREF1058_RS01715 overlap by 4 nucleotides
HMPREF1058_RS01735: HMPREF1058_RS01735 - excinuclease ABC subunit UvrA, at 54,084 to 56,912
_RS01735
HMPREF1058_RS01730: HMPREF1058_RS01730 - Cys-tRNA(Pro) deacylase, at 56,927 to 57,412
_RS01730
HMPREF1058_RS01725: HMPREF1058_RS01725 - peptide MFS transporter, at 57,519 to 59,180
_RS01725
HMPREF1058_RS01720: HMPREF1058_RS01720 - lysine exporter LysO family protein, at 59,244 to 59,864
_RS01720
HMPREF1058_RS01715: HMPREF1058_RS01715 - LysO family transporter, at 59,861 to 60,139
_RS01715
Position (kb) 57
58
59
60 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 56.542 kb on - strand, within HMPREF1058_RS01735 at 56.544 kb on - strand, within HMPREF1058_RS01735 at 56.546 kb on + strand, within HMPREF1058_RS01735 at 56.643 kb on + strand at 56.660 kb on + strand at 56.753 kb on + strand at 56.782 kb on - strand at 56.983 kb on - strand, within HMPREF1058_RS01730 at 56.987 kb on + strand, within HMPREF1058_RS01730 at 56.987 kb on + strand, within HMPREF1058_RS01730 at 57.227 kb on + strand, within HMPREF1058_RS01730 at 57.228 kb on - strand, within HMPREF1058_RS01730 at 57.278 kb on + strand, within HMPREF1058_RS01730 at 57.279 kb on - strand, within HMPREF1058_RS01730 at 57.279 kb on - strand, within HMPREF1058_RS01730 at 57.280 kb on + strand, within HMPREF1058_RS01730 at 57.280 kb on + strand, within HMPREF1058_RS01730 at 57.280 kb on + strand at 57.282 kb on + strand, within HMPREF1058_RS01730 at 57.282 kb on + strand, within HMPREF1058_RS01730 at 57.283 kb on - strand, within HMPREF1058_RS01730 at 57.314 kb on + strand, within HMPREF1058_RS01730 at 57.314 kb on + strand, within HMPREF1058_RS01730 at 57.314 kb on + strand, within HMPREF1058_RS01730 at 57.315 kb on - strand, within HMPREF1058_RS01730 at 57.317 kb on - strand, within HMPREF1058_RS01730 at 57.496 kb on + strand at 57.504 kb on - strand at 57.589 kb on - strand at 57.687 kb on + strand, within HMPREF1058_RS01725 at 57.819 kb on + strand, within HMPREF1058_RS01725 at 57.893 kb on - strand, within HMPREF1058_RS01725 at 57.954 kb on + strand, within HMPREF1058_RS01725 at 58.042 kb on - strand, within HMPREF1058_RS01725 at 58.042 kb on - strand, within HMPREF1058_RS01725 at 58.170 kb on - strand, within HMPREF1058_RS01725 at 58.170 kb on - strand, within HMPREF1058_RS01725 at 58.181 kb on + strand, within HMPREF1058_RS01725 at 58.199 kb on + strand, within HMPREF1058_RS01725 at 58.203 kb on + strand, within HMPREF1058_RS01725 at 58.216 kb on + strand, within HMPREF1058_RS01725 at 58.269 kb on - strand, within HMPREF1058_RS01725 at 58.379 kb on - strand, within HMPREF1058_RS01725 at 58.517 kb on + strand, within HMPREF1058_RS01725 at 58.595 kb on + strand, within HMPREF1058_RS01725 at 58.632 kb on - strand, within HMPREF1058_RS01725 at 58.634 kb on + strand, within HMPREF1058_RS01725 at 58.635 kb on - strand, within HMPREF1058_RS01725 at 58.643 kb on + strand, within HMPREF1058_RS01725 at 58.723 kb on + strand, within HMPREF1058_RS01725 at 58.723 kb on + strand, within HMPREF1058_RS01725 at 58.801 kb on + strand, within HMPREF1058_RS01725 at 58.841 kb on + strand, within HMPREF1058_RS01725 at 58.914 kb on + strand, within HMPREF1058_RS01725 at 58.992 kb on + strand, within HMPREF1058_RS01725 at 59.054 kb on + strand at 59.194 kb on + strand at 59.194 kb on + strand at 59.194 kb on + strand at 59.194 kb on - strand at 59.195 kb on - strand at 59.195 kb on - strand at 59.195 kb on - strand at 59.196 kb on + strand at 59.197 kb on - strand at 59.198 kb on + strand at 59.285 kb on + strand at 59.361 kb on + strand, within HMPREF1058_RS01720 at 59.362 kb on - strand, within HMPREF1058_RS01720 at 59.362 kb on - strand, within HMPREF1058_RS01720 at 59.557 kb on + strand, within HMPREF1058_RS01720 at 59.561 kb on - strand, within HMPREF1058_RS01720 at 59.586 kb on - strand, within HMPREF1058_RS01720 at 59.723 kb on + strand, within HMPREF1058_RS01720 at 59.723 kb on + strand, within HMPREF1058_RS01720 at 59.759 kb on - strand, within HMPREF1058_RS01720 at 59.791 kb on + strand, within HMPREF1058_RS01720 at 59.819 kb on + strand at 59.912 kb on + strand at 59.917 kb on + strand, within HMPREF1058_RS01715 at 59.918 kb on - strand, within HMPREF1058_RS01715 at 59.933 kb on + strand, within HMPREF1058_RS01715 at 60.049 kb on + strand, within HMPREF1058_RS01715 at 60.089 kb on + strand, within HMPREF1058_RS01715 at 60.089 kb on + strand, within HMPREF1058_RS01715 at 60.089 kb on + strand, within HMPREF1058_RS01715 at 60.089 kb on + strand, within HMPREF1058_RS01715 at 60.090 kb on - strand, within HMPREF1058_RS01715 at 60.094 kb on - strand, within HMPREF1058_RS01715 at 60.094 kb on - strand, within HMPREF1058_RS01715 at 60.099 kb on - strand, within HMPREF1058_RS01715 at 60.118 kb on + strand at 60.119 kb on - strand at 60.126 kb on - strand at 60.127 kb on + strand at 60.127 kb on + strand at 60.127 kb on + strand at 60.127 kb on + strand at 60.128 kb on - strand at 60.128 kb on - strand at 60.131 kb on - strand at 60.133 kb on + strand at 60.167 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Brucella 1x (C) complex media remove 56,542 - HMPREF1058_RS01735 0.87 -1.6 56,544 - HMPREF1058_RS01735 0.87 +0.6 56,546 + HMPREF1058_RS01735 0.87 -1.4 56,643 + -2.5 56,660 + -0.3 56,753 + -0.2 56,782 - -1.2 56,983 - HMPREF1058_RS01730 0.12 +0.2 56,987 + HMPREF1058_RS01730 0.12 -0.7 56,987 + HMPREF1058_RS01730 0.12 +1.0 57,227 + HMPREF1058_RS01730 0.62 -1.1 57,228 - HMPREF1058_RS01730 0.62 -0.2 57,278 + HMPREF1058_RS01730 0.72 +0.2 57,279 - HMPREF1058_RS01730 0.72 -0.9 57,279 - HMPREF1058_RS01730 0.72 -2.0 57,280 + HMPREF1058_RS01730 0.73 -0.1 57,280 + HMPREF1058_RS01730 0.73 +1.2 57,280 + -0.2 57,282 + HMPREF1058_RS01730 0.73 -0.5 57,282 + HMPREF1058_RS01730 0.73 -0.2 57,283 - HMPREF1058_RS01730 0.73 +0.2 57,314 + HMPREF1058_RS01730 0.80 -0.5 57,314 + HMPREF1058_RS01730 0.80 -0.5 57,314 + HMPREF1058_RS01730 0.80 +0.6 57,315 - HMPREF1058_RS01730 0.80 -0.1 57,317 - HMPREF1058_RS01730 0.80 -0.3 57,496 + -0.3 57,504 - -0.7 57,589 - -0.2 57,687 + HMPREF1058_RS01725 0.10 +0.3 57,819 + HMPREF1058_RS01725 0.18 -1.2 57,893 - HMPREF1058_RS01725 0.23 +0.1 57,954 + HMPREF1058_RS01725 0.26 -2.1 58,042 - HMPREF1058_RS01725 0.31 -0.5 58,042 - HMPREF1058_RS01725 0.31 +1.0 58,170 - HMPREF1058_RS01725 0.39 +1.4 58,170 - HMPREF1058_RS01725 0.39 -0.8 58,181 + HMPREF1058_RS01725 0.40 -0.6 58,199 + HMPREF1058_RS01725 0.41 +1.5 58,203 + HMPREF1058_RS01725 0.41 -0.5 58,216 + HMPREF1058_RS01725 0.42 -2.1 58,269 - HMPREF1058_RS01725 0.45 -0.5 58,379 - HMPREF1058_RS01725 0.52 -1.5 58,517 + HMPREF1058_RS01725 0.60 -1.5 58,595 + HMPREF1058_RS01725 0.65 -1.8 58,632 - HMPREF1058_RS01725 0.67 -0.4 58,634 + HMPREF1058_RS01725 0.67 -2.8 58,635 - HMPREF1058_RS01725 0.67 -1.9 58,643 + HMPREF1058_RS01725 0.68 +0.8 58,723 + HMPREF1058_RS01725 0.72 -0.7 58,723 + HMPREF1058_RS01725 0.72 -0.4 58,801 + HMPREF1058_RS01725 0.77 -0.7 58,841 + HMPREF1058_RS01725 0.80 +0.5 58,914 + HMPREF1058_RS01725 0.84 -0.8 58,992 + HMPREF1058_RS01725 0.89 -1.2 59,054 + -0.4 59,194 + -0.2 59,194 + -0.3 59,194 + +0.8 59,194 - -1.1 59,195 - -0.0 59,195 - -0.3 59,195 - -1.6 59,196 + +1.0 59,197 - -0.6 59,198 + -0.0 59,285 + +1.7 59,361 + HMPREF1058_RS01720 0.19 +0.1 59,362 - HMPREF1058_RS01720 0.19 +0.1 59,362 - HMPREF1058_RS01720 0.19 -0.5 59,557 + HMPREF1058_RS01720 0.50 +1.2 59,561 - HMPREF1058_RS01720 0.51 -1.0 59,586 - HMPREF1058_RS01720 0.55 +0.2 59,723 + HMPREF1058_RS01720 0.77 -0.0 59,723 + HMPREF1058_RS01720 0.77 +0.1 59,759 - HMPREF1058_RS01720 0.83 +0.1 59,791 + HMPREF1058_RS01720 0.88 +0.1 59,819 + -0.8 59,912 + -1.6 59,917 + HMPREF1058_RS01715 0.20 -1.6 59,918 - HMPREF1058_RS01715 0.20 -0.2 59,933 + HMPREF1058_RS01715 0.26 +0.8 60,049 + HMPREF1058_RS01715 0.67 +0.4 60,089 + HMPREF1058_RS01715 0.82 +1.9 60,089 + HMPREF1058_RS01715 0.82 +1.1 60,089 + HMPREF1058_RS01715 0.82 +1.4 60,089 + HMPREF1058_RS01715 0.82 +1.4 60,090 - HMPREF1058_RS01715 0.82 -0.3 60,094 - HMPREF1058_RS01715 0.84 -0.2 60,094 - HMPREF1058_RS01715 0.84 -1.1 60,099 - HMPREF1058_RS01715 0.85 +0.3 60,118 + +0.1 60,119 - -0.1 60,126 - +0.1 60,127 + +0.5 60,127 + -0.1 60,127 + -0.7 60,127 + +1.1 60,128 - +3.0 60,128 - -0.1 60,131 - +0.2 60,133 + +0.5 60,167 + -0.7
Or see this region's nucleotide sequence