Experiment: D-Maltose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17625 and HMPREF1058_RS17620 are separated by 48 nucleotides HMPREF1058_RS17620 and HMPREF1058_RS17615 are separated by 138 nucleotides HMPREF1058_RS17615 and HMPREF1058_RS17610 are separated by 16 nucleotides HMPREF1058_RS17610 and HMPREF1058_RS17605 are separated by 39 nucleotides
HMPREF1058_RS17625: HMPREF1058_RS17625 - TonB-dependent receptor, at 384,518 to 386,677
_RS17625
HMPREF1058_RS17620: HMPREF1058_RS17620 - hypothetical protein, at 386,726 to 387,088
_RS17620
HMPREF1058_RS17615: HMPREF1058_RS17615 - inorganic phosphate transporter, at 387,227 to 388,240
_RS17615
HMPREF1058_RS17610: HMPREF1058_RS17610 - DUF47 domain-containing protein, at 388,257 to 388,904
_RS17610
HMPREF1058_RS17605: HMPREF1058_RS17605 - DedA family protein, at 388,944 to 389,588
_RS17605
Position (kb) 387
388
389 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 386.294 kb on + strand, within HMPREF1058_RS17625 at 386.664 kb on + strand at 386.683 kb on - strand at 386.716 kb on - strand at 387.008 kb on - strand, within HMPREF1058_RS17620 at 387.077 kb on + strand at 387.099 kb on + strand at 387.106 kb on - strand at 387.106 kb on - strand at 387.143 kb on - strand at 387.146 kb on + strand at 387.148 kb on + strand at 387.149 kb on - strand at 387.162 kb on - strand at 387.238 kb on + strand at 387.242 kb on + strand at 387.243 kb on - strand at 387.254 kb on - strand at 387.267 kb on - strand at 387.267 kb on - strand at 387.368 kb on - strand, within HMPREF1058_RS17615 at 387.424 kb on - strand, within HMPREF1058_RS17615 at 387.474 kb on - strand, within HMPREF1058_RS17615 at 387.487 kb on + strand, within HMPREF1058_RS17615 at 387.488 kb on - strand, within HMPREF1058_RS17615 at 387.548 kb on - strand, within HMPREF1058_RS17615 at 387.593 kb on + strand, within HMPREF1058_RS17615 at 387.593 kb on + strand, within HMPREF1058_RS17615 at 387.593 kb on + strand, within HMPREF1058_RS17615 at 387.685 kb on + strand, within HMPREF1058_RS17615 at 387.808 kb on + strand, within HMPREF1058_RS17615 at 387.809 kb on - strand, within HMPREF1058_RS17615 at 388.009 kb on + strand, within HMPREF1058_RS17615 at 388.009 kb on + strand, within HMPREF1058_RS17615 at 388.011 kb on + strand, within HMPREF1058_RS17615 at 388.012 kb on - strand, within HMPREF1058_RS17615 at 388.078 kb on + strand, within HMPREF1058_RS17615 at 388.192 kb on + strand at 388.223 kb on - strand at 388.246 kb on - strand at 388.246 kb on - strand at 388.258 kb on + strand at 388.339 kb on - strand, within HMPREF1058_RS17610 at 388.363 kb on - strand, within HMPREF1058_RS17610 at 388.461 kb on + strand, within HMPREF1058_RS17610 at 388.462 kb on - strand, within HMPREF1058_RS17610 at 388.513 kb on - strand, within HMPREF1058_RS17610 at 388.514 kb on + strand, within HMPREF1058_RS17610 at 388.533 kb on + strand, within HMPREF1058_RS17610 at 388.534 kb on - strand, within HMPREF1058_RS17610 at 388.545 kb on + strand at 388.582 kb on + strand, within HMPREF1058_RS17610 at 388.620 kb on + strand, within HMPREF1058_RS17610 at 388.620 kb on + strand, within HMPREF1058_RS17610 at 388.634 kb on + strand, within HMPREF1058_RS17610 at 388.760 kb on - strand, within HMPREF1058_RS17610 at 388.946 kb on - strand at 388.968 kb on - strand at 388.977 kb on + strand at 389.000 kb on + strand at 389.016 kb on - strand, within HMPREF1058_RS17605 at 389.047 kb on - strand, within HMPREF1058_RS17605 at 389.090 kb on + strand, within HMPREF1058_RS17605 at 389.121 kb on - strand, within HMPREF1058_RS17605 at 389.123 kb on - strand, within HMPREF1058_RS17605 at 389.187 kb on + strand, within HMPREF1058_RS17605 at 389.188 kb on - strand, within HMPREF1058_RS17605 at 389.189 kb on + strand, within HMPREF1058_RS17605
Per-strain Table
Position Strand Gene LocusTag Fraction D-Maltose 10 mM (C) remove 386,294 + HMPREF1058_RS17625 0.82 -0.0 386,664 + -0.2 386,683 - -3.2 386,716 - -1.6 387,008 - HMPREF1058_RS17620 0.78 +1.6 387,077 + -0.4 387,099 + +1.0 387,106 - -0.8 387,106 - -0.6 387,143 - -0.4 387,146 + -0.2 387,148 + -0.2 387,149 - -0.5 387,162 - +0.9 387,238 + +0.5 387,242 + +1.1 387,243 - +0.5 387,254 - -0.4 387,267 - +0.5 387,267 - +1.1 387,368 - HMPREF1058_RS17615 0.14 +0.2 387,424 - HMPREF1058_RS17615 0.19 -1.1 387,474 - HMPREF1058_RS17615 0.24 -0.0 387,487 + HMPREF1058_RS17615 0.26 +0.7 387,488 - HMPREF1058_RS17615 0.26 -1.1 387,548 - HMPREF1058_RS17615 0.32 -0.0 387,593 + HMPREF1058_RS17615 0.36 +0.0 387,593 + HMPREF1058_RS17615 0.36 +0.2 387,593 + HMPREF1058_RS17615 0.36 -0.2 387,685 + HMPREF1058_RS17615 0.45 +0.6 387,808 + HMPREF1058_RS17615 0.57 +0.9 387,809 - HMPREF1058_RS17615 0.57 -0.6 388,009 + HMPREF1058_RS17615 0.77 -0.3 388,009 + HMPREF1058_RS17615 0.77 -0.7 388,011 + HMPREF1058_RS17615 0.77 -1.1 388,012 - HMPREF1058_RS17615 0.77 +0.2 388,078 + HMPREF1058_RS17615 0.84 -1.5 388,192 + +0.1 388,223 - +0.4 388,246 - -1.0 388,246 - -0.6 388,258 + +0.3 388,339 - HMPREF1058_RS17610 0.13 +1.1 388,363 - HMPREF1058_RS17610 0.16 -0.3 388,461 + HMPREF1058_RS17610 0.31 -0.9 388,462 - HMPREF1058_RS17610 0.32 -1.2 388,513 - HMPREF1058_RS17610 0.40 -0.8 388,514 + HMPREF1058_RS17610 0.40 -1.5 388,533 + HMPREF1058_RS17610 0.43 -0.2 388,534 - HMPREF1058_RS17610 0.43 +0.4 388,545 + +0.5 388,582 + HMPREF1058_RS17610 0.50 -0.5 388,620 + HMPREF1058_RS17610 0.56 +0.8 388,620 + HMPREF1058_RS17610 0.56 -0.8 388,634 + HMPREF1058_RS17610 0.58 -0.5 388,760 - HMPREF1058_RS17610 0.78 +0.0 388,946 - -1.5 388,968 - -2.0 388,977 + +0.4 389,000 + -0.1 389,016 - HMPREF1058_RS17605 0.11 +1.0 389,047 - HMPREF1058_RS17605 0.16 -0.1 389,090 + HMPREF1058_RS17605 0.23 -0.6 389,121 - HMPREF1058_RS17605 0.27 +1.9 389,123 - HMPREF1058_RS17605 0.28 -0.9 389,187 + HMPREF1058_RS17605 0.38 -0.7 389,188 - HMPREF1058_RS17605 0.38 -2.0 389,189 + HMPREF1058_RS17605 0.38 +1.3
Or see this region's nucleotide sequence