Experiment: D-Maltose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS12090 and HMPREF1058_RS12085 are separated by 9 nucleotides HMPREF1058_RS12085 and HMPREF1058_RS12080 are separated by 134 nucleotides HMPREF1058_RS12080 and HMPREF1058_RS12075 are separated by 22 nucleotides HMPREF1058_RS12075 and HMPREF1058_RS12070 are separated by 116 nucleotides HMPREF1058_RS12070 and HMPREF1058_RS12065 are separated by 6 nucleotides
HMPREF1058_RS12090: HMPREF1058_RS12090 - tetratricopeptide repeat protein, at 204,597 to 207,500
_RS12090
HMPREF1058_RS12085: HMPREF1058_RS12085 - NUDIX domain-containing protein, at 207,510 to 208,034
_RS12085
HMPREF1058_RS12080: HMPREF1058_RS12080 - HlyC/CorC family transporter, at 208,169 to 209,455
_RS12080
HMPREF1058_RS12075: HMPREF1058_RS12075 - hypothetical protein, at 209,478 to 209,861
_RS12075
HMPREF1058_RS12070: HMPREF1058_RS12070 - Lrp/AsnC ligand binding domain-containing protein, at 209,978 to 210,436
_RS12070
HMPREF1058_RS12065: HMPREF1058_RS12065 - DUF4491 family protein, at 210,443 to 210,757
_RS12065
Position (kb) 208
209
210 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 207.253 kb on + strand at 207.266 kb on + strand at 207.322 kb on + strand at 207.334 kb on + strand at 207.334 kb on + strand at 207.334 kb on + strand at 207.376 kb on + strand at 207.376 kb on + strand at 207.397 kb on + strand at 207.398 kb on - strand at 207.501 kb on - strand at 207.680 kb on + strand, within HMPREF1058_RS12085 at 207.680 kb on + strand, within HMPREF1058_RS12085 at 207.680 kb on + strand, within HMPREF1058_RS12085 at 207.680 kb on + strand, within HMPREF1058_RS12085 at 207.680 kb on + strand, within HMPREF1058_RS12085 at 207.681 kb on - strand, within HMPREF1058_RS12085 at 207.685 kb on - strand, within HMPREF1058_RS12085 at 207.707 kb on - strand, within HMPREF1058_RS12085 at 207.812 kb on + strand, within HMPREF1058_RS12085 at 207.908 kb on + strand, within HMPREF1058_RS12085 at 207.928 kb on + strand, within HMPREF1058_RS12085 at 208.009 kb on + strand at 208.017 kb on + strand at 208.017 kb on + strand at 208.035 kb on - strand at 208.035 kb on - strand at 208.039 kb on - strand at 208.039 kb on - strand at 208.044 kb on + strand at 208.052 kb on + strand at 208.085 kb on + strand at 208.094 kb on - strand at 208.158 kb on + strand at 208.196 kb on - strand at 208.196 kb on - strand at 208.196 kb on - strand at 208.196 kb on - strand at 208.255 kb on + strand at 208.256 kb on - strand at 208.370 kb on - strand, within HMPREF1058_RS12080 at 208.370 kb on - strand, within HMPREF1058_RS12080 at 208.382 kb on - strand, within HMPREF1058_RS12080 at 208.386 kb on - strand, within HMPREF1058_RS12080 at 208.422 kb on + strand, within HMPREF1058_RS12080 at 208.423 kb on - strand, within HMPREF1058_RS12080 at 208.451 kb on + strand, within HMPREF1058_RS12080 at 208.451 kb on + strand at 208.451 kb on + strand, within HMPREF1058_RS12080 at 208.452 kb on - strand, within HMPREF1058_RS12080 at 208.452 kb on - strand, within HMPREF1058_RS12080 at 208.452 kb on - strand, within HMPREF1058_RS12080 at 208.452 kb on - strand at 208.452 kb on - strand, within HMPREF1058_RS12080 at 208.457 kb on + strand, within HMPREF1058_RS12080 at 208.497 kb on - strand, within HMPREF1058_RS12080 at 208.507 kb on + strand, within HMPREF1058_RS12080 at 208.508 kb on - strand, within HMPREF1058_RS12080 at 208.618 kb on - strand, within HMPREF1058_RS12080 at 208.842 kb on + strand, within HMPREF1058_RS12080 at 208.842 kb on + strand, within HMPREF1058_RS12080 at 208.843 kb on - strand, within HMPREF1058_RS12080 at 208.865 kb on + strand, within HMPREF1058_RS12080 at 208.865 kb on + strand, within HMPREF1058_RS12080 at 208.875 kb on + strand, within HMPREF1058_RS12080 at 208.906 kb on - strand, within HMPREF1058_RS12080 at 208.942 kb on - strand, within HMPREF1058_RS12080 at 209.040 kb on + strand, within HMPREF1058_RS12080 at 209.040 kb on + strand, within HMPREF1058_RS12080 at 209.041 kb on - strand, within HMPREF1058_RS12080 at 209.041 kb on - strand, within HMPREF1058_RS12080 at 209.049 kb on + strand, within HMPREF1058_RS12080 at 209.081 kb on + strand, within HMPREF1058_RS12080 at 209.081 kb on + strand, within HMPREF1058_RS12080 at 209.089 kb on - strand, within HMPREF1058_RS12080 at 209.292 kb on - strand, within HMPREF1058_RS12080 at 209.325 kb on + strand, within HMPREF1058_RS12080 at 209.415 kb on + strand at 209.472 kb on + strand at 209.472 kb on + strand at 209.477 kb on + strand at 209.477 kb on + strand at 209.586 kb on + strand, within HMPREF1058_RS12075 at 209.610 kb on + strand, within HMPREF1058_RS12075 at 209.610 kb on + strand, within HMPREF1058_RS12075 at 209.611 kb on - strand, within HMPREF1058_RS12075 at 209.631 kb on + strand, within HMPREF1058_RS12075 at 209.632 kb on - strand, within HMPREF1058_RS12075 at 209.633 kb on + strand, within HMPREF1058_RS12075 at 209.633 kb on + strand, within HMPREF1058_RS12075 at 209.635 kb on + strand, within HMPREF1058_RS12075 at 209.635 kb on + strand, within HMPREF1058_RS12075 at 209.636 kb on - strand, within HMPREF1058_RS12075 at 209.659 kb on - strand, within HMPREF1058_RS12075 at 209.795 kb on + strand, within HMPREF1058_RS12075 at 209.796 kb on - strand, within HMPREF1058_RS12075 at 209.802 kb on - strand, within HMPREF1058_RS12075 at 209.912 kb on + strand at 209.931 kb on + strand at 210.019 kb on + strand at 210.019 kb on + strand at 210.019 kb on + strand at 210.020 kb on - strand at 210.124 kb on + strand, within HMPREF1058_RS12070 at 210.170 kb on - strand, within HMPREF1058_RS12070 at 210.178 kb on + strand, within HMPREF1058_RS12070 at 210.182 kb on + strand, within HMPREF1058_RS12070 at 210.183 kb on - strand, within HMPREF1058_RS12070 at 210.187 kb on - strand, within HMPREF1058_RS12070 at 210.226 kb on - strand, within HMPREF1058_RS12070 at 210.285 kb on - strand, within HMPREF1058_RS12070 at 210.286 kb on + strand, within HMPREF1058_RS12070
Per-strain Table
Position Strand Gene LocusTag Fraction D-Maltose 10 mM (C) remove 207,253 + +0.6 207,266 + +0.3 207,322 + -1.6 207,334 + +0.2 207,334 + +1.1 207,334 + -1.2 207,376 + -0.2 207,376 + -0.2 207,397 + -0.1 207,398 - -0.1 207,501 - -0.3 207,680 + HMPREF1058_RS12085 0.32 -0.7 207,680 + HMPREF1058_RS12085 0.32 -1.1 207,680 + HMPREF1058_RS12085 0.32 -0.2 207,680 + HMPREF1058_RS12085 0.32 -0.9 207,680 + HMPREF1058_RS12085 0.32 +0.2 207,681 - HMPREF1058_RS12085 0.33 -0.7 207,685 - HMPREF1058_RS12085 0.33 +0.1 207,707 - HMPREF1058_RS12085 0.38 -2.6 207,812 + HMPREF1058_RS12085 0.58 -0.1 207,908 + HMPREF1058_RS12085 0.76 -0.0 207,928 + HMPREF1058_RS12085 0.80 -0.1 208,009 + -0.8 208,017 + -0.2 208,017 + -0.0 208,035 - -0.5 208,035 - -0.5 208,039 - -0.6 208,039 - -0.4 208,044 + -0.9 208,052 + -0.3 208,085 + +1.4 208,094 - -0.2 208,158 + -0.9 208,196 - -1.0 208,196 - -1.6 208,196 - -1.3 208,196 - -1.1 208,255 + -1.8 208,256 - +0.1 208,370 - HMPREF1058_RS12080 0.16 -1.0 208,370 - HMPREF1058_RS12080 0.16 -0.3 208,382 - HMPREF1058_RS12080 0.17 -0.4 208,386 - HMPREF1058_RS12080 0.17 -1.2 208,422 + HMPREF1058_RS12080 0.20 -2.5 208,423 - HMPREF1058_RS12080 0.20 -0.2 208,451 + HMPREF1058_RS12080 0.22 +0.2 208,451 + -0.5 208,451 + HMPREF1058_RS12080 0.22 +0.0 208,452 - HMPREF1058_RS12080 0.22 -0.8 208,452 - HMPREF1058_RS12080 0.22 -0.5 208,452 - HMPREF1058_RS12080 0.22 -0.5 208,452 - +0.5 208,452 - HMPREF1058_RS12080 0.22 -1.6 208,457 + HMPREF1058_RS12080 0.22 -0.2 208,497 - HMPREF1058_RS12080 0.25 -0.7 208,507 + HMPREF1058_RS12080 0.26 -1.1 208,508 - HMPREF1058_RS12080 0.26 +0.8 208,618 - HMPREF1058_RS12080 0.35 -1.0 208,842 + HMPREF1058_RS12080 0.52 +0.3 208,842 + HMPREF1058_RS12080 0.52 +0.6 208,843 - HMPREF1058_RS12080 0.52 -1.5 208,865 + HMPREF1058_RS12080 0.54 -0.3 208,865 + HMPREF1058_RS12080 0.54 +0.0 208,875 + HMPREF1058_RS12080 0.55 +0.2 208,906 - HMPREF1058_RS12080 0.57 -2.3 208,942 - HMPREF1058_RS12080 0.60 -0.2 209,040 + HMPREF1058_RS12080 0.68 -0.0 209,040 + HMPREF1058_RS12080 0.68 +0.8 209,041 - HMPREF1058_RS12080 0.68 -0.7 209,041 - HMPREF1058_RS12080 0.68 -1.2 209,049 + HMPREF1058_RS12080 0.68 -0.1 209,081 + HMPREF1058_RS12080 0.71 +0.2 209,081 + HMPREF1058_RS12080 0.71 -0.5 209,089 - HMPREF1058_RS12080 0.71 -1.4 209,292 - HMPREF1058_RS12080 0.87 -0.9 209,325 + HMPREF1058_RS12080 0.90 +0.4 209,415 + +0.7 209,472 + -0.0 209,472 + -0.4 209,477 + +0.4 209,477 + +0.4 209,586 + HMPREF1058_RS12075 0.28 -0.5 209,610 + HMPREF1058_RS12075 0.34 -0.3 209,610 + HMPREF1058_RS12075 0.34 +0.8 209,611 - HMPREF1058_RS12075 0.35 -2.2 209,631 + HMPREF1058_RS12075 0.40 -0.7 209,632 - HMPREF1058_RS12075 0.40 +0.5 209,633 + HMPREF1058_RS12075 0.40 +0.4 209,633 + HMPREF1058_RS12075 0.40 -0.8 209,635 + HMPREF1058_RS12075 0.41 +0.0 209,635 + HMPREF1058_RS12075 0.41 +1.0 209,636 - HMPREF1058_RS12075 0.41 -0.6 209,659 - HMPREF1058_RS12075 0.47 +0.8 209,795 + HMPREF1058_RS12075 0.83 +0.4 209,796 - HMPREF1058_RS12075 0.83 -0.6 209,802 - HMPREF1058_RS12075 0.84 -0.1 209,912 + -0.4 209,931 + +0.8 210,019 + -1.0 210,019 + -2.1 210,019 + +1.8 210,020 - -2.4 210,124 + HMPREF1058_RS12070 0.32 -2.6 210,170 - HMPREF1058_RS12070 0.42 -3.8 210,178 + HMPREF1058_RS12070 0.44 -0.2 210,182 + HMPREF1058_RS12070 0.44 -0.5 210,183 - HMPREF1058_RS12070 0.45 -2.3 210,187 - HMPREF1058_RS12070 0.46 -1.2 210,226 - HMPREF1058_RS12070 0.54 -1.5 210,285 - HMPREF1058_RS12070 0.67 -0.8 210,286 + HMPREF1058_RS12070 0.67 -1.9
Or see this region's nucleotide sequence