Experiment: D-Maltose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS07215 and HMPREF1058_RS07210 are separated by 18 nucleotides HMPREF1058_RS07210 and HMPREF1058_RS07205 are separated by 196 nucleotides
HMPREF1058_RS07215: HMPREF1058_RS07215 - two-component sensor histidine kinase, at 286,205 to 287,986
_RS07215
HMPREF1058_RS07210: HMPREF1058_RS07210 - response regulator transcription factor, at 288,005 to 288,694
_RS07210
HMPREF1058_RS07205: HMPREF1058_RS07205 - type I asparaginase, at 288,891 to 289,934
_RS07205
Position (kb) 288
289 Strain fitness (log2 ratio) -2
-1
0
1
2 at 287.116 kb on + strand, within HMPREF1058_RS07215 at 287.147 kb on + strand, within HMPREF1058_RS07215 at 287.184 kb on - strand, within HMPREF1058_RS07215 at 287.235 kb on + strand, within HMPREF1058_RS07215 at 287.235 kb on + strand, within HMPREF1058_RS07215 at 287.236 kb on - strand, within HMPREF1058_RS07215 at 287.236 kb on - strand, within HMPREF1058_RS07215 at 287.238 kb on - strand, within HMPREF1058_RS07215 at 287.281 kb on + strand, within HMPREF1058_RS07215 at 287.432 kb on + strand, within HMPREF1058_RS07215 at 287.462 kb on + strand, within HMPREF1058_RS07215 at 287.531 kb on - strand, within HMPREF1058_RS07215 at 287.533 kb on - strand, within HMPREF1058_RS07215 at 287.542 kb on + strand, within HMPREF1058_RS07215 at 287.550 kb on + strand, within HMPREF1058_RS07215 at 287.551 kb on - strand, within HMPREF1058_RS07215 at 287.551 kb on - strand, within HMPREF1058_RS07215 at 287.619 kb on + strand, within HMPREF1058_RS07215 at 287.736 kb on + strand, within HMPREF1058_RS07215 at 287.826 kb on + strand at 287.827 kb on - strand at 287.939 kb on + strand at 287.940 kb on - strand at 287.977 kb on + strand at 288.120 kb on + strand, within HMPREF1058_RS07210 at 288.120 kb on + strand, within HMPREF1058_RS07210 at 288.120 kb on + strand, within HMPREF1058_RS07210 at 288.120 kb on + strand, within HMPREF1058_RS07210 at 288.121 kb on - strand, within HMPREF1058_RS07210 at 288.151 kb on + strand, within HMPREF1058_RS07210 at 288.185 kb on + strand, within HMPREF1058_RS07210 at 288.242 kb on + strand, within HMPREF1058_RS07210 at 288.243 kb on - strand, within HMPREF1058_RS07210 at 288.273 kb on - strand, within HMPREF1058_RS07210 at 288.291 kb on - strand, within HMPREF1058_RS07210 at 288.388 kb on + strand, within HMPREF1058_RS07210 at 288.391 kb on - strand, within HMPREF1058_RS07210 at 288.694 kb on + strand at 288.694 kb on + strand at 288.695 kb on - strand at 288.695 kb on - strand at 288.696 kb on + strand at 288.697 kb on - strand at 288.708 kb on + strand at 288.711 kb on + strand at 288.715 kb on - strand at 288.767 kb on + strand at 288.874 kb on - strand at 288.887 kb on + strand at 288.940 kb on - strand at 289.005 kb on - strand, within HMPREF1058_RS07205 at 289.181 kb on - strand, within HMPREF1058_RS07205 at 289.192 kb on - strand, within HMPREF1058_RS07205 at 289.215 kb on - strand, within HMPREF1058_RS07205 at 289.267 kb on - strand, within HMPREF1058_RS07205 at 289.346 kb on - strand, within HMPREF1058_RS07205 at 289.479 kb on + strand, within HMPREF1058_RS07205 at 289.484 kb on + strand, within HMPREF1058_RS07205 at 289.485 kb on - strand, within HMPREF1058_RS07205 at 289.516 kb on - strand, within HMPREF1058_RS07205 at 289.642 kb on + strand at 289.643 kb on - strand, within HMPREF1058_RS07205
Per-strain Table
Position Strand Gene LocusTag Fraction D-Maltose 10 mM (C) remove 287,116 + HMPREF1058_RS07215 0.51 +1.0 287,147 + HMPREF1058_RS07215 0.53 +1.2 287,184 - HMPREF1058_RS07215 0.55 +2.2 287,235 + HMPREF1058_RS07215 0.58 +0.8 287,235 + HMPREF1058_RS07215 0.58 -0.8 287,236 - HMPREF1058_RS07215 0.58 +0.5 287,236 - HMPREF1058_RS07215 0.58 +0.9 287,238 - HMPREF1058_RS07215 0.58 +0.0 287,281 + HMPREF1058_RS07215 0.60 +0.0 287,432 + HMPREF1058_RS07215 0.69 +0.1 287,462 + HMPREF1058_RS07215 0.71 -1.2 287,531 - HMPREF1058_RS07215 0.74 +0.0 287,533 - HMPREF1058_RS07215 0.75 +0.1 287,542 + HMPREF1058_RS07215 0.75 -1.2 287,550 + HMPREF1058_RS07215 0.75 +0.5 287,551 - HMPREF1058_RS07215 0.76 -0.7 287,551 - HMPREF1058_RS07215 0.76 -0.5 287,619 + HMPREF1058_RS07215 0.79 +0.0 287,736 + HMPREF1058_RS07215 0.86 -2.4 287,826 + +2.0 287,827 - +0.4 287,939 + -0.0 287,940 - -0.1 287,977 + -0.8 288,120 + HMPREF1058_RS07210 0.17 +0.2 288,120 + HMPREF1058_RS07210 0.17 +0.2 288,120 + HMPREF1058_RS07210 0.17 +0.3 288,120 + HMPREF1058_RS07210 0.17 -0.6 288,121 - HMPREF1058_RS07210 0.17 +0.2 288,151 + HMPREF1058_RS07210 0.21 +0.6 288,185 + HMPREF1058_RS07210 0.26 +1.3 288,242 + HMPREF1058_RS07210 0.34 -0.3 288,243 - HMPREF1058_RS07210 0.34 +2.0 288,273 - HMPREF1058_RS07210 0.39 -1.7 288,291 - HMPREF1058_RS07210 0.41 -0.6 288,388 + HMPREF1058_RS07210 0.56 -0.5 288,391 - HMPREF1058_RS07210 0.56 +1.1 288,694 + +0.8 288,694 + +0.3 288,695 - -0.5 288,695 - +0.2 288,696 + +0.4 288,697 - +1.0 288,708 + -0.5 288,711 + -0.5 288,715 - -1.1 288,767 + +0.3 288,874 - +1.2 288,887 + +0.0 288,940 - -1.4 289,005 - HMPREF1058_RS07205 0.11 -1.6 289,181 - HMPREF1058_RS07205 0.28 -1.1 289,192 - HMPREF1058_RS07205 0.29 -2.4 289,215 - HMPREF1058_RS07205 0.31 -2.1 289,267 - HMPREF1058_RS07205 0.36 -0.3 289,346 - HMPREF1058_RS07205 0.44 -0.7 289,479 + HMPREF1058_RS07205 0.56 -1.4 289,484 + HMPREF1058_RS07205 0.57 -1.5 289,485 - HMPREF1058_RS07205 0.57 -1.9 289,516 - HMPREF1058_RS07205 0.60 -1.3 289,642 + -0.2 289,643 - HMPREF1058_RS07205 0.72 -1.5
Or see this region's nucleotide sequence