Experiment: D-Maltose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS06590 and HMPREF1058_RS06585 are separated by 57 nucleotides HMPREF1058_RS06585 and HMPREF1058_RS06580 are separated by 267 nucleotides
HMPREF1058_RS06590: HMPREF1058_RS06590 - glutamine--tRNA ligase/YqeY domain fusion protein, at 441,826 to 443,565
_RS06590
HMPREF1058_RS06585: HMPREF1058_RS06585 - PstS family phosphate ABC transporter substrate-binding protein, at 443,623 to 444,441
_RS06585
HMPREF1058_RS06580: HMPREF1058_RS06580 - phosphate ABC transporter permease subunit PstC, at 444,709 to 445,896
_RS06580
Position (kb) 443
444
445 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 443.683 kb on - strand at 443.685 kb on - strand at 443.719 kb on + strand, within HMPREF1058_RS06585 at 443.726 kb on + strand at 443.726 kb on + strand, within HMPREF1058_RS06585 at 443.727 kb on - strand, within HMPREF1058_RS06585 at 443.727 kb on - strand, within HMPREF1058_RS06585 at 443.792 kb on - strand, within HMPREF1058_RS06585 at 443.796 kb on - strand, within HMPREF1058_RS06585 at 444.144 kb on - strand, within HMPREF1058_RS06585 at 444.396 kb on + strand at 444.411 kb on + strand at 444.454 kb on + strand at 444.454 kb on + strand at 444.497 kb on - strand at 444.611 kb on + strand at 444.615 kb on - strand at 444.617 kb on - strand at 444.648 kb on - strand at 444.660 kb on + strand at 444.777 kb on + strand at 444.778 kb on - strand at 444.778 kb on - strand at 444.851 kb on - strand, within HMPREF1058_RS06580 at 444.906 kb on - strand, within HMPREF1058_RS06580 at 444.906 kb on - strand, within HMPREF1058_RS06580 at 445.303 kb on + strand, within HMPREF1058_RS06580 at 445.304 kb on - strand, within HMPREF1058_RS06580 at 445.306 kb on - strand, within HMPREF1058_RS06580 at 445.371 kb on + strand, within HMPREF1058_RS06580 at 445.371 kb on + strand, within HMPREF1058_RS06580
Per-strain Table
Position Strand Gene LocusTag Fraction D-Maltose 10 mM (C) remove 443,683 - -0.5 443,685 - -0.7 443,719 + HMPREF1058_RS06585 0.12 -0.2 443,726 + +0.4 443,726 + HMPREF1058_RS06585 0.13 -0.9 443,727 - HMPREF1058_RS06585 0.13 -0.6 443,727 - HMPREF1058_RS06585 0.13 -1.6 443,792 - HMPREF1058_RS06585 0.21 +0.1 443,796 - HMPREF1058_RS06585 0.21 +1.2 444,144 - HMPREF1058_RS06585 0.64 +0.4 444,396 + -2.5 444,411 + +0.5 444,454 + -1.8 444,454 + -3.6 444,497 - -2.5 444,611 + -0.3 444,615 - -0.0 444,617 - -1.8 444,648 - +0.0 444,660 + -0.7 444,777 + -1.6 444,778 - +0.4 444,778 - +1.8 444,851 - HMPREF1058_RS06580 0.12 -0.3 444,906 - HMPREF1058_RS06580 0.17 +0.7 444,906 - HMPREF1058_RS06580 0.17 +0.1 445,303 + HMPREF1058_RS06580 0.50 +0.2 445,304 - HMPREF1058_RS06580 0.50 -0.1 445,306 - HMPREF1058_RS06580 0.50 -0.0 445,371 + HMPREF1058_RS06580 0.56 -1.2 445,371 + HMPREF1058_RS06580 0.56 +0.4
Or see this region's nucleotide sequence