Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS20100

Experiment: Glucose (C) and nitrate (N); with TAPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Glucose (C) and nitrate (N); with TAPS
4,548,690	-				+0.4
4,548,720	-				-1.2
4,548,720	-				-2.8
4,548,741	-				-0.9
4,548,741	-				-1.3
4,548,759	+				+1.4
4,548,759	+				-0.3
4,548,759	+				+0.9
4,548,759	+				-0.2
4,548,759	+				-1.9
4,548,760	-				+0.5
4,548,760	-				+1.8
4,548,760	-				+1.1
4,548,760	-				-1.7
4,548,760	-				-0.1
4,548,760	-				+0.4
4,548,763	+				+0.7
4,548,763	+				+1.3
4,548,763	+				+1.1
4,548,763	+				-1.0
4,548,763	+				-0.6
4,548,763	+				-1.7
4,548,763	+				-0.2
4,548,763	+				+0.7
4,548,763	+				+0.0
4,548,763	+				+1.4
4,548,764	-				-0.4
4,548,764	-				-0.2
4,548,764	-				+0.4
4,548,764	-				-0.3
4,548,764	-				+1.4
4,548,764	-				+0.5
4,548,764	-				-0.8
4,548,764	-				-0.2
4,548,764	-				+0.6
4,548,764	-				-1.0
4,548,764	-				-1.4
4,548,764	-				-1.5
4,548,764	-				+0.5
4,548,764	-				-0.2
4,548,805	-		PFLU_RS20095	0.10	+0.2
4,548,924	+		PFLU_RS20095	0.24	+0.4
4,548,987	-		PFLU_RS20095	0.31	+1.1
4,548,987	-		PFLU_RS20095	0.31	-1.9
4,548,987	-		PFLU_RS20095	0.31	-0.7
4,549,170	+		PFLU_RS20095	0.53	-0.2
4,549,170	+		PFLU_RS20095	0.53	-1.0
4,549,171	-		PFLU_RS20095	0.53	+0.4
4,549,379	+		PFLU_RS20095	0.78	+0.3
4,549,379	+		PFLU_RS20095	0.78	+0.1
4,549,379	+		PFLU_RS20095	0.78	+1.3
4,549,380	-		PFLU_RS20095	0.78	-0.4
4,549,380	-		PFLU_RS20095	0.78	-0.6
4,549,527	+				-1.2
4,549,527	+				-0.2
4,549,527	+				+0.2
4,549,527	+				-0.1
4,549,527	+				-0.3
4,549,527	+				-0.8
4,549,528	-				-0.3
4,549,528	-				+0.7
4,549,528	-				-1.2
4,549,528	-				-2.2
4,549,528	-				-0.6
4,549,528	-				+0.8
4,549,600	+				+1.6
4,549,600	+				-1.3
4,549,600	+				-0.8
4,549,600	+				+1.0
4,549,600	+				+0.1
4,549,601	-				-0.6
4,549,601	-				-0.8
4,549,620	-				+0.8
4,549,632	+				+0.8
4,549,633	-				+0.4
4,549,663	+				-0.0
4,549,663	+				+0.0
4,549,663	+				-0.4
4,549,663	+				+0.3
4,549,664	-				-0.4
4,549,684	+				-1.6
4,549,684	+				+1.4
4,549,684	+				+0.0
4,549,684	+				+0.9
4,549,685	-				+2.4
4,549,685	-				+0.4
4,549,685	-				+1.0
4,549,685	-				-0.7
4,549,685	-				-1.6
4,549,685	-				-0.2
4,549,685	-				-1.4
4,549,685	-				-0.3
4,550,044	+		PFLU_RS20100	0.27	+0.3
4,550,044	+		PFLU_RS20100	0.27	-0.9
4,550,044	+		PFLU_RS20100	0.27	+0.4
4,550,044	+		PFLU_RS20100	0.27	-0.1
4,550,044	+		PFLU_RS20100	0.27	+0.4
4,550,045	-		PFLU_RS20100	0.27	+0.7
4,550,045	-		PFLU_RS20100	0.27	+0.8
4,550,126	-		PFLU_RS20100	0.33	-1.0
4,550,170	-		PFLU_RS20100	0.36	+0.8
4,550,516	+		PFLU_RS20100	0.59	+0.1
4,550,516	+		PFLU_RS20100	0.59	-0.6
4,550,516	+		PFLU_RS20100	0.59	-0.6
4,550,516	+		PFLU_RS20100	0.59	+0.8
4,550,516	+		PFLU_RS20100	0.59	-0.9
4,550,516	+		PFLU_RS20100	0.59	+1.4
4,550,516	+		PFLU_RS20100	0.59	-1.6
4,550,516	+		PFLU_RS20100	0.59	-0.2
4,550,516	+		PFLU_RS20100	0.59	-0.3
4,550,517	-		PFLU_RS20100	0.59	+1.3
4,550,517	-		PFLU_RS20100	0.59	-0.2
4,550,517	-		PFLU_RS20100	0.59	-0.9
4,550,517	-		PFLU_RS20100	0.59	+0.6
4,550,517	-		PFLU_RS20100	0.59	-1.4
4,550,517	-		PFLU_RS20100	0.59	-0.7
4,550,517	-		PFLU_RS20100	0.59	+1.0
4,550,517	-		PFLU_RS20100	0.59	-1.0
4,550,517	-		PFLU_RS20100	0.59	-1.4
4,550,517	-		PFLU_RS20100	0.59	-0.2
4,550,771	+		PFLU_RS20100	0.77	+0.7
4,550,771	+		PFLU_RS20100	0.77	-0.3
4,550,771	+		PFLU_RS20100	0.77	+0.4
4,550,772	-		PFLU_RS20100	0.77	+1.0
4,550,878	+		PFLU_RS20100	0.84	+0.1
4,550,879	-		PFLU_RS20100	0.84	+0.8
4,550,885	+		PFLU_RS20100	0.84	+1.1
4,550,961	+		PFLU_RS20100	0.89	+0.5
4,551,046	+				-0.3
4,551,046	+				+0.8
4,551,063	+				-0.7
4,551,189	+				+0.8
4,551,189	+				+0.2
4,551,189	+				-0.9
4,551,189	+				-1.3
4,551,189	+				+0.3
4,551,190	-				-0.6
4,551,196	-				+0.2
4,551,200	+				+1.2
4,551,201	-				-0.7
4,551,292	+		PFLU_RS20105	0.10	+1.4
4,551,292	+		PFLU_RS20105	0.10	-0.5
4,551,292	+		PFLU_RS20105	0.10	+0.6
4,551,292	+		PFLU_RS20105	0.10	+2.4
4,551,293	-		PFLU_RS20105	0.10	+1.0
4,551,293	-		PFLU_RS20105	0.10	+0.8
4,551,293	-		PFLU_RS20105	0.10	+0.2
4,551,293	-		PFLU_RS20105	0.10	-1.6
4,551,294	+		PFLU_RS20105	0.10	-0.4
4,551,294	+		PFLU_RS20105	0.10	+0.4
4,551,294	+		PFLU_RS20105	0.10	-0.4
4,551,294	+		PFLU_RS20105	0.10	-0.0
4,551,294	+		PFLU_RS20105	0.10	+1.1
4,551,294	+		PFLU_RS20105	0.10	+1.0
4,551,294	+		PFLU_RS20105	0.10	-1.2
4,551,294	+		PFLU_RS20105	0.10	-0.9
4,551,295	-		PFLU_RS20105	0.11	+0.2
4,551,295	-		PFLU_RS20105	0.11	+0.6
4,551,295	-		PFLU_RS20105	0.11	+2.8
4,551,295	-		PFLU_RS20105	0.11	-0.2
4,551,295	-		PFLU_RS20105	0.11	+1.4
4,551,295	-		PFLU_RS20105	0.11	-0.6
4,551,295	-		PFLU_RS20105	0.11	-0.6
4,551,295	-		PFLU_RS20105	0.11	-0.6
4,551,295	-		PFLU_RS20105	0.11	-1.9
4,551,295	-		PFLU_RS20105	0.11	+0.2
4,551,295	-		PFLU_RS20105	0.11	-1.2
4,551,295	-		PFLU_RS20105	0.11	+0.8
4,551,296	+		PFLU_RS20105	0.11	+0.1
4,551,296	+		PFLU_RS20105	0.11	+0.2
4,551,296	+		PFLU_RS20105	0.11	-0.4
4,551,296	+		PFLU_RS20105	0.11	+1.2
4,551,296	+		PFLU_RS20105	0.11	-0.2
4,551,296	+		PFLU_RS20105	0.11	+0.2
4,551,296	+		PFLU_RS20105	0.11	-0.6
4,551,296	+		PFLU_RS20105	0.11	+0.1
4,551,296	+		PFLU_RS20105	0.11	+1.4
4,551,296	+		PFLU_RS20105	0.11	+0.7
4,551,296	+		PFLU_RS20105	0.11	+1.2
4,551,296	+		PFLU_RS20105	0.11	+1.2
4,551,296	+		PFLU_RS20105	0.11	-0.2
4,551,296	+		PFLU_RS20105	0.11	-0.7
4,551,296	+		PFLU_RS20105	0.11	+0.6
4,551,296	+		PFLU_RS20105	0.11	+0.8
4,551,297	-		PFLU_RS20105	0.11	-2.7
4,551,297	-		PFLU_RS20105	0.11	-0.6
4,551,297	-		PFLU_RS20105	0.11	-1.1
4,551,297	-		PFLU_RS20105	0.11	+0.6
4,551,297	-		PFLU_RS20105	0.11	-0.3
4,551,297	-		PFLU_RS20105	0.11	+1.4
4,551,297	-		PFLU_RS20105	0.11	+0.6
4,551,339	+		PFLU_RS20105	0.15	+0.1
4,551,339	+		PFLU_RS20105	0.15	-1.1
4,551,339	+		PFLU_RS20105	0.15	-0.2
4,551,462	+		PFLU_RS20105	0.27	-2.0
4,551,462	+		PFLU_RS20105	0.27	-1.3
4,551,462	+		PFLU_RS20105	0.27	+0.8
4,551,462	+		PFLU_RS20105	0.27	+0.8
4,551,463	-		PFLU_RS20105	0.27	+0.2
4,551,580	-		PFLU_RS20105	0.39	+0.8
4,551,580	-		PFLU_RS20105	0.39	-0.2
4,551,601	-		PFLU_RS20105	0.41	-0.2
4,551,709	+		PFLU_RS20105	0.52	+0.4
4,551,709	+		PFLU_RS20105	0.52	-2.5
4,551,728	+		PFLU_RS20105	0.54	-1.5
4,551,729	-		PFLU_RS20105	0.54	+0.6
4,551,859	+		PFLU_RS20105	0.67	-1.4
4,551,859	+		PFLU_RS20105	0.67	+0.5
4,551,859	+		PFLU_RS20105	0.67	+1.4
4,551,859	+		PFLU_RS20105	0.67	+0.1
4,551,860	-		PFLU_RS20105	0.67	-0.1
4,551,860	-		PFLU_RS20105	0.67	-1.0
4,551,860	-		PFLU_RS20105	0.67	-0.0
4,551,982	+		PFLU_RS20105	0.79	-0.6
4,551,982	+		PFLU_RS20105	0.79	-0.6
4,551,982	+		PFLU_RS20105	0.79	-0.2
4,551,982	+		PFLU_RS20105	0.79	-0.3
4,551,982	+		PFLU_RS20105	0.79	-0.1
4,551,982	+		PFLU_RS20105	0.79	-2.4
4,551,982	+		PFLU_RS20105	0.79	+0.4
4,551,983	-		PFLU_RS20105	0.79	+1.0
4,551,983	-		PFLU_RS20105	0.79	-1.7
4,551,983	-		PFLU_RS20105	0.79	+0.9
4,551,983	-		PFLU_RS20105	0.79	-0.9
4,551,983	-		PFLU_RS20105	0.79	-0.0
4,551,983	-		PFLU_RS20105	0.79	-1.2
4,551,983	-		PFLU_RS20105	0.79	+1.6
4,551,983	-		PFLU_RS20105	0.79	-1.2
4,551,984	+		PFLU_RS20105	0.79	-0.0
4,551,984	+		PFLU_RS20105	0.79	+0.3
4,551,984	+		PFLU_RS20105	0.79	+1.9
4,551,984	+		PFLU_RS20105	0.79	+0.6
4,551,984	+		PFLU_RS20105	0.79	-1.2
4,551,984	+		PFLU_RS20105	0.79	-0.3
4,551,985	-		PFLU_RS20105	0.80	-0.4
4,551,985	-		PFLU_RS20105	0.80	+0.8
4,551,985	-		PFLU_RS20105	0.80	-1.0
4,551,985	-		PFLU_RS20105	0.80	-2.0
4,551,985	-		PFLU_RS20105	0.80	+0.2
4,551,985	-		PFLU_RS20105	0.80	+0.2
4,551,985	-		PFLU_RS20105	0.80	+1.1
4,551,985	-		PFLU_RS20105	0.80	+0.4
4,552,067	-		PFLU_RS20105	0.88	+1.8
4,552,067	-		PFLU_RS20105	0.88	+0.0
4,552,067	-		PFLU_RS20105	0.88	-1.4