Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS01690

Experiment: Glucose (C) and nitrate (N); with TAPS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS01685 and PFLU_RS01690 overlap by 4 nucleotidesPFLU_RS01690 and PFLU_RS01695 are separated by 295 nucleotidesPFLU_RS01695 and PFLU_RS01700 are separated by 77 nucleotides PFLU_RS01685: PFLU_RS01685 - nitrogen regulation protein NR(I), at 374,209 to 375,645 _RS01685 PFLU_RS01690: PFLU_RS01690 - nitrogen regulation protein NR(II), at 375,642 to 376,727 _RS01690 PFLU_RS01695: PFLU_RS01695 - cupin domain-containing protein, at 377,023 to 377,448 _RS01695 PFLU_RS01700: PFLU_RS01700 - chorismate mutase, at 377,526 to 378,062 _RS01700 Position (kb) 375 376 377Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 374.721 kb on + strand, within PFLU_RS01685at 374.722 kb on - strand, within PFLU_RS01685at 374.722 kb on - strand, within PFLU_RS01685at 374.858 kb on + strand, within PFLU_RS01685at 375.341 kb on + strand, within PFLU_RS01685at 375.341 kb on + strand, within PFLU_RS01685at 375.342 kb on - strand, within PFLU_RS01685at 375.342 kb on - strand, within PFLU_RS01685at 375.342 kb on - strand, within PFLU_RS01685at 375.362 kb on + strand, within PFLU_RS01685at 375.362 kb on + strand, within PFLU_RS01685at 375.362 kb on + strand, within PFLU_RS01685at 375.363 kb on - strand, within PFLU_RS01685at 375.600 kb on + strandat 375.600 kb on + strandat 375.601 kb on - strandat 375.601 kb on - strandat 375.601 kb on - strandat 375.986 kb on + strand, within PFLU_RS01690at 375.987 kb on - strand, within PFLU_RS01690at 376.026 kb on + strand, within PFLU_RS01690at 376.026 kb on + strand, within PFLU_RS01690at 376.026 kb on + strand, within PFLU_RS01690at 376.026 kb on + strand, within PFLU_RS01690at 376.026 kb on + strand, within PFLU_RS01690at 376.026 kb on + strand, within PFLU_RS01690at 376.027 kb on - strand, within PFLU_RS01690at 376.027 kb on - strand, within PFLU_RS01690at 376.027 kb on - strand, within PFLU_RS01690at 376.027 kb on - strand, within PFLU_RS01690at 376.027 kb on - strand, within PFLU_RS01690at 376.048 kb on + strand, within PFLU_RS01690at 376.049 kb on - strand, within PFLU_RS01690at 376.174 kb on - strand, within PFLU_RS01690at 376.174 kb on - strand, within PFLU_RS01690at 376.219 kb on + strand, within PFLU_RS01690at 376.219 kb on + strand, within PFLU_RS01690at 376.219 kb on + strand, within PFLU_RS01690at 376.219 kb on + strand, within PFLU_RS01690at 376.219 kb on + strand, within PFLU_RS01690at 376.219 kb on + strand, within PFLU_RS01690at 376.219 kb on + strand, within PFLU_RS01690at 376.219 kb on + strand, within PFLU_RS01690at 376.220 kb on - strand, within PFLU_RS01690at 376.220 kb on - strand, within PFLU_RS01690at 376.220 kb on - strand, within PFLU_RS01690at 376.220 kb on - strand, within PFLU_RS01690at 376.220 kb on - strand, within PFLU_RS01690at 376.220 kb on - strand, within PFLU_RS01690at 376.220 kb on - strand, within PFLU_RS01690at 376.639 kb on + strandat 376.639 kb on + strandat 376.639 kb on + strandat 376.639 kb on + strandat 376.639 kb on + strandat 376.639 kb on + strandat 376.639 kb on + strandat 376.639 kb on + strandat 376.639 kb on + strandat 376.639 kb on + strandat 376.639 kb on + strandat 376.639 kb on + strandat 376.639 kb on + strandat 376.639 kb on + strandat 376.639 kb on + strandat 376.639 kb on + strandat 376.639 kb on + strandat 376.639 kb on + strandat 376.639 kb on + strandat 376.639 kb on + strandat 376.640 kb on - strandat 376.640 kb on - strandat 376.640 kb on - strandat 376.640 kb on - strandat 376.640 kb on - strandat 376.640 kb on - strandat 376.640 kb on - strandat 376.640 kb on - strandat 376.640 kb on - strandat 376.640 kb on - strandat 376.640 kb on - strandat 376.640 kb on - strandat 376.640 kb on - strandat 376.640 kb on - strandat 376.640 kb on - strandat 376.640 kb on - strandat 376.695 kb on + strandat 376.696 kb on - strandat 376.696 kb on - strandat 376.773 kb on + strandat 376.773 kb on + strandat 376.773 kb on + strandat 376.773 kb on + strandat 376.773 kb on + strandat 376.773 kb on + strandat 376.773 kb on + strandat 376.773 kb on + strandat 376.773 kb on + strandat 376.773 kb on + strandat 376.773 kb on + strandat 376.773 kb on + strandat 376.773 kb on + strandat 376.773 kb on + strandat 376.773 kb on + strandat 376.773 kb on + strandat 376.773 kb on + strandat 376.773 kb on + strandat 376.773 kb on + strandat 376.773 kb on + strandat 376.774 kb on - strandat 376.774 kb on - strandat 376.774 kb on - strandat 376.774 kb on - strandat 376.774 kb on - strandat 376.774 kb on - strandat 376.774 kb on - strandat 376.774 kb on - strandat 376.774 kb on - strandat 376.774 kb on - strandat 376.774 kb on - strandat 376.842 kb on - strandat 376.935 kb on + strandat 376.935 kb on + strandat 376.936 kb on - strandat 376.936 kb on - strandat 376.937 kb on + strandat 376.937 kb on + strandat 376.937 kb on + strandat 376.937 kb on + strandat 376.937 kb on + strandat 376.938 kb on - strandat 376.938 kb on - strandat 376.938 kb on - strandat 376.938 kb on - strandat 376.938 kb on - strandat 376.938 kb on - strandat 376.938 kb on - strandat 376.938 kb on - strandat 376.938 kb on - strandat 376.948 kb on + strandat 376.948 kb on + strandat 376.948 kb on + strandat 376.948 kb on + strandat 376.948 kb on + strandat 377.063 kb on + strandat 377.100 kb on + strand, within PFLU_RS01695at 377.100 kb on + strand, within PFLU_RS01695at 377.100 kb on + strand, within PFLU_RS01695at 377.100 kb on + strand, within PFLU_RS01695at 377.100 kb on + strand, within PFLU_RS01695at 377.101 kb on - strand, within PFLU_RS01695at 377.101 kb on - strand, within PFLU_RS01695at 377.101 kb on - strand, within PFLU_RS01695at 377.101 kb on - strand, within PFLU_RS01695at 377.101 kb on - strand, within PFLU_RS01695at 377.101 kb on - strand, within PFLU_RS01695at 377.101 kb on - strand, within PFLU_RS01695at 377.101 kb on - strand, within PFLU_RS01695at 377.120 kb on - strand, within PFLU_RS01695at 377.172 kb on + strand, within PFLU_RS01695at 377.207 kb on + strand, within PFLU_RS01695at 377.207 kb on + strand, within PFLU_RS01695at 377.207 kb on + strand, within PFLU_RS01695at 377.207 kb on + strand, within PFLU_RS01695at 377.207 kb on + strand, within PFLU_RS01695at 377.207 kb on + strand, within PFLU_RS01695at 377.207 kb on + strand, within PFLU_RS01695at 377.207 kb on + strand, within PFLU_RS01695at 377.208 kb on - strand, within PFLU_RS01695at 377.208 kb on - strand, within PFLU_RS01695at 377.208 kb on - strand, within PFLU_RS01695at 377.208 kb on - strand, within PFLU_RS01695at 377.208 kb on - strand, within PFLU_RS01695at 377.208 kb on - strand, within PFLU_RS01695at 377.208 kb on - strand, within PFLU_RS01695at 377.272 kb on + strand, within PFLU_RS01695at 377.272 kb on + strand, within PFLU_RS01695at 377.272 kb on + strand, within PFLU_RS01695at 377.272 kb on + strand, within PFLU_RS01695at 377.272 kb on + strand, within PFLU_RS01695at 377.272 kb on + strand, within PFLU_RS01695at 377.273 kb on - strand, within PFLU_RS01695at 377.273 kb on - strand, within PFLU_RS01695at 377.273 kb on - strand, within PFLU_RS01695at 377.273 kb on - strand, within PFLU_RS01695at 377.303 kb on + strand, within PFLU_RS01695at 377.304 kb on - strand, within PFLU_RS01695at 377.312 kb on + strand, within PFLU_RS01695at 377.312 kb on + strand, within PFLU_RS01695at 377.312 kb on + strand, within PFLU_RS01695at 377.312 kb on + strand, within PFLU_RS01695at 377.312 kb on + strand, within PFLU_RS01695at 377.313 kb on - strand, within PFLU_RS01695at 377.313 kb on - strand, within PFLU_RS01695at 377.313 kb on - strand, within PFLU_RS01695at 377.313 kb on - strand, within PFLU_RS01695at 377.313 kb on - strand, within PFLU_RS01695at 377.313 kb on - strand, within PFLU_RS01695at 377.313 kb on - strand, within PFLU_RS01695at 377.313 kb on - strand, within PFLU_RS01695at 377.313 kb on - strand, within PFLU_RS01695at 377.313 kb on - strand, within PFLU_RS01695at 377.368 kb on + strand, within PFLU_RS01695at 377.369 kb on - strand, within PFLU_RS01695at 377.369 kb on - strand, within PFLU_RS01695at 377.369 kb on - strand, within PFLU_RS01695at 377.369 kb on - strand, within PFLU_RS01695at 377.369 kb on - strand, within PFLU_RS01695at 377.466 kb on + strandat 377.484 kb on - strandat 377.531 kb on + strandat 377.531 kb on + strandat 377.531 kb on + strandat 377.531 kb on + strandat 377.531 kb on + strandat 377.531 kb on + strandat 377.531 kb on + strandat 377.531 kb on + strandat 377.531 kb on + strandat 377.532 kb on - strandat 377.532 kb on - strandat 377.532 kb on - strandat 377.532 kb on - strandat 377.532 kb on - strandat 377.532 kb on - strandat 377.532 kb on - strandat 377.709 kb on + strand, within PFLU_RS01700at 377.709 kb on + strand, within PFLU_RS01700at 377.709 kb on + strand, within PFLU_RS01700at 377.709 kb on + strand, within PFLU_RS01700at 377.709 kb on + strand, within PFLU_RS01700at 377.709 kb on + strand, within PFLU_RS01700at 377.710 kb on - strand, within PFLU_RS01700at 377.710 kb on - strand, within PFLU_RS01700at 377.710 kb on - strand, within PFLU_RS01700

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucose (C) and nitrate (N); with TAPS
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374,721 + PFLU_RS01685 0.36 -2.1
374,722 - PFLU_RS01685 0.36 -3.3
374,722 - PFLU_RS01685 0.36 -1.6
374,858 + PFLU_RS01685 0.45 -0.5
375,341 + PFLU_RS01685 0.79 -1.5
375,341 + PFLU_RS01685 0.79 -1.1
375,342 - PFLU_RS01685 0.79 -1.3
375,342 - PFLU_RS01685 0.79 +0.2
375,342 - PFLU_RS01685 0.79 -2.3
375,362 + PFLU_RS01685 0.80 -2.0
375,362 + PFLU_RS01685 0.80 -0.8
375,362 + PFLU_RS01685 0.80 -0.8
375,363 - PFLU_RS01685 0.80 -1.0
375,600 + -1.6
375,600 + -1.3
375,601 - -1.3
375,601 - -2.6
375,601 - -1.5
375,986 + PFLU_RS01690 0.32 -0.8
375,987 - PFLU_RS01690 0.32 -2.4
376,026 + PFLU_RS01690 0.35 -2.9
376,026 + PFLU_RS01690 0.35 -1.4
376,026 + PFLU_RS01690 0.35 -1.7
376,026 + PFLU_RS01690 0.35 -1.5
376,026 + PFLU_RS01690 0.35 -1.7
376,026 + PFLU_RS01690 0.35 -1.7
376,027 - PFLU_RS01690 0.35 -1.3
376,027 - PFLU_RS01690 0.35 +0.3
376,027 - PFLU_RS01690 0.35 -2.4
376,027 - PFLU_RS01690 0.35 -3.4
376,027 - PFLU_RS01690 0.35 -2.8
376,048 + PFLU_RS01690 0.37 -2.4
376,049 - PFLU_RS01690 0.37 +0.1
376,174 - PFLU_RS01690 0.49 -2.2
376,174 - PFLU_RS01690 0.49 -2.2
376,219 + PFLU_RS01690 0.53 -1.5
376,219 + PFLU_RS01690 0.53 -1.4
376,219 + PFLU_RS01690 0.53 -1.8
376,219 + PFLU_RS01690 0.53 -1.8
376,219 + PFLU_RS01690 0.53 -1.8
376,219 + PFLU_RS01690 0.53 -3.3
376,219 + PFLU_RS01690 0.53 -2.3
376,219 + PFLU_RS01690 0.53 -0.7
376,220 - PFLU_RS01690 0.53 -3.0
376,220 - PFLU_RS01690 0.53 -1.4
376,220 - PFLU_RS01690 0.53 -1.1
376,220 - PFLU_RS01690 0.53 -1.4
376,220 - PFLU_RS01690 0.53 -2.4
376,220 - PFLU_RS01690 0.53 -2.8
376,220 - PFLU_RS01690 0.53 -2.2
376,639 + -2.6
376,639 + -0.3
376,639 + -0.1
376,639 + -1.8
376,639 + -1.0
376,639 + -0.7
376,639 + -1.3
376,639 + -0.8
376,639 + -1.4
376,639 + -2.9
376,639 + +0.0
376,639 + -2.4
376,639 + -1.1
376,639 + -1.8
376,639 + -0.8
376,639 + -1.9
376,639 + -0.8
376,639 + -3.6
376,639 + -1.6
376,639 + -2.3
376,640 - -1.1
376,640 - -3.5
376,640 - -2.8
376,640 - +1.3
376,640 - -1.0
376,640 - -3.2
376,640 - -2.0
376,640 - -2.9
376,640 - -2.6
376,640 - -3.7
376,640 - -2.4
376,640 - -2.5
376,640 - -2.8
376,640 - -1.1
376,640 - -2.5
376,640 - -2.3
376,695 + +0.3
376,696 - -1.5
376,696 - +0.5
376,773 + +1.2
376,773 + +0.7
376,773 + +1.0
376,773 + -0.9
376,773 + -2.7
376,773 + +0.7
376,773 + -0.7
376,773 + -0.2
376,773 + -3.8
376,773 + -1.2
376,773 + -0.2
376,773 + -1.7
376,773 + -1.6
376,773 + -1.6
376,773 + -1.3
376,773 + -1.8
376,773 + -0.3
376,773 + -0.5
376,773 + -2.5
376,773 + -0.6
376,774 - -0.4
376,774 - +0.9
376,774 - +0.2
376,774 - -1.5
376,774 - +1.2
376,774 - +0.7
376,774 - +2.0
376,774 - -1.2
376,774 - +1.3
376,774 - +0.3
376,774 - -2.1
376,842 - +1.3
376,935 + -0.7
376,935 + +3.1
376,936 - -0.7
376,936 - -0.2
376,937 + -1.0
376,937 + -2.3
376,937 + +0.3
376,937 + +1.6
376,937 + -0.7
376,938 - +1.4
376,938 - -0.1
376,938 - +1.0
376,938 - -0.3
376,938 - -1.3
376,938 - -2.6
376,938 - -0.3
376,938 - +0.2
376,938 - -1.0
376,948 + -0.8
376,948 + -0.9
376,948 + -2.3
376,948 + +0.2
376,948 + +0.4
377,063 + +1.1
377,100 + PFLU_RS01695 0.18 -2.1
377,100 + PFLU_RS01695 0.18 -1.1
377,100 + PFLU_RS01695 0.18 -0.0
377,100 + PFLU_RS01695 0.18 +0.6
377,100 + PFLU_RS01695 0.18 +0.4
377,101 - PFLU_RS01695 0.18 -0.8
377,101 - PFLU_RS01695 0.18 -0.4
377,101 - PFLU_RS01695 0.18 +0.6
377,101 - PFLU_RS01695 0.18 -0.6
377,101 - PFLU_RS01695 0.18 +2.7
377,101 - PFLU_RS01695 0.18 +0.9
377,101 - PFLU_RS01695 0.18 +0.5
377,101 - PFLU_RS01695 0.18 -1.3
377,120 - PFLU_RS01695 0.23 -0.1
377,172 + PFLU_RS01695 0.35 +0.3
377,207 + PFLU_RS01695 0.43 +0.3
377,207 + PFLU_RS01695 0.43 +0.1
377,207 + PFLU_RS01695 0.43 +0.7
377,207 + PFLU_RS01695 0.43 +0.6
377,207 + PFLU_RS01695 0.43 -0.3
377,207 + PFLU_RS01695 0.43 +0.1
377,207 + PFLU_RS01695 0.43 +1.5
377,207 + PFLU_RS01695 0.43 +1.5
377,208 - PFLU_RS01695 0.43 +0.1
377,208 - PFLU_RS01695 0.43 -2.1
377,208 - PFLU_RS01695 0.43 -1.6
377,208 - PFLU_RS01695 0.43 -0.2
377,208 - PFLU_RS01695 0.43 +0.1
377,208 - PFLU_RS01695 0.43 -0.7
377,208 - PFLU_RS01695 0.43 -2.4
377,272 + PFLU_RS01695 0.58 +0.3
377,272 + PFLU_RS01695 0.58 +0.6
377,272 + PFLU_RS01695 0.58 -1.6
377,272 + PFLU_RS01695 0.58 -0.4
377,272 + PFLU_RS01695 0.58 -0.1
377,272 + PFLU_RS01695 0.58 -0.1
377,273 - PFLU_RS01695 0.59 -0.5
377,273 - PFLU_RS01695 0.59 -1.0
377,273 - PFLU_RS01695 0.59 -0.4
377,273 - PFLU_RS01695 0.59 -1.9
377,303 + PFLU_RS01695 0.66 +0.1
377,304 - PFLU_RS01695 0.66 +0.4
377,312 + PFLU_RS01695 0.68 -0.0
377,312 + PFLU_RS01695 0.68 +0.1
377,312 + PFLU_RS01695 0.68 -0.4
377,312 + PFLU_RS01695 0.68 +0.7
377,312 + PFLU_RS01695 0.68 -3.5
377,313 - PFLU_RS01695 0.68 -0.7
377,313 - PFLU_RS01695 0.68 +1.0
377,313 - PFLU_RS01695 0.68 +0.6
377,313 - PFLU_RS01695 0.68 +0.9
377,313 - PFLU_RS01695 0.68 -0.3
377,313 - PFLU_RS01695 0.68 +4.6
377,313 - PFLU_RS01695 0.68 +0.6
377,313 - PFLU_RS01695 0.68 +2.3
377,313 - PFLU_RS01695 0.68 +0.3
377,313 - PFLU_RS01695 0.68 +0.6
377,368 + PFLU_RS01695 0.81 -0.5
377,369 - PFLU_RS01695 0.81 +0.7
377,369 - PFLU_RS01695 0.81 +0.2
377,369 - PFLU_RS01695 0.81 +1.5
377,369 - PFLU_RS01695 0.81 -1.5
377,369 - PFLU_RS01695 0.81 -0.3
377,466 + -1.7
377,484 - -0.7
377,531 + +0.4
377,531 + -0.8
377,531 + +0.5
377,531 + +1.4
377,531 + -1.4
377,531 + +1.9
377,531 + -0.1
377,531 + -2.0
377,531 + -0.4
377,532 - -1.5
377,532 - -1.8
377,532 - -1.4
377,532 - +1.3
377,532 - -0.8
377,532 - -0.3
377,532 - +1.3
377,709 + PFLU_RS01700 0.34 -0.8
377,709 + PFLU_RS01700 0.34 +1.1
377,709 + PFLU_RS01700 0.34 -1.0
377,709 + PFLU_RS01700 0.34 +0.1
377,709 + PFLU_RS01700 0.34 -1.0
377,709 + PFLU_RS01700 0.34 -1.0
377,710 - PFLU_RS01700 0.34 -1.7
377,710 - PFLU_RS01700 0.34 +0.3
377,710 - PFLU_RS01700 0.34 -1.1

Or see this region's nucleotide sequence