Experiment: 20 mM putrescine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_217 and Pf6N2E2_218 are separated by 107 nucleotides Pf6N2E2_218 and Pf6N2E2_219 are separated by 21 nucleotides Pf6N2E2_219 and Pf6N2E2_220 are separated by 2 nucleotides
Pf6N2E2_217 - Signal transduction histidine kinase, at 275,181 to 276,443
_217
Pf6N2E2_218 - hypothetical protein, at 276,551 to 277,000
_218
Pf6N2E2_219 - Response regulator BaeR, at 277,022 to 277,705
_219
Pf6N2E2_220 - Sensory histidine kinase BaeS, at 277,708 to 279,126
_220
Position (kb) 276
277
278 Strain fitness (log2 ratio) -2
-1
0
1
2 at 275.607 kb on + strand, within Pf6N2E2_217 at 275.607 kb on + strand, within Pf6N2E2_217 at 275.620 kb on - strand, within Pf6N2E2_217 at 275.779 kb on + strand, within Pf6N2E2_217 at 276.456 kb on - strand at 276.458 kb on + strand at 276.458 kb on + strand at 276.458 kb on + strand at 276.458 kb on + strand at 276.458 kb on + strand at 276.479 kb on + strand at 276.565 kb on + strand at 276.565 kb on + strand at 276.565 kb on + strand at 276.566 kb on - strand at 276.614 kb on + strand, within Pf6N2E2_218 at 276.614 kb on + strand, within Pf6N2E2_218 at 276.614 kb on + strand, within Pf6N2E2_218 at 276.798 kb on + strand, within Pf6N2E2_218 at 276.798 kb on + strand, within Pf6N2E2_218 at 276.799 kb on - strand, within Pf6N2E2_218 at 276.935 kb on + strand, within Pf6N2E2_218 at 276.935 kb on + strand, within Pf6N2E2_218 at 276.979 kb on + strand at 276.983 kb on + strand at 276.983 kb on + strand at 276.983 kb on + strand at 276.984 kb on - strand at 276.998 kb on + strand at 276.999 kb on - strand at 277.060 kb on - strand at 277.060 kb on - strand at 277.060 kb on - strand at 277.060 kb on - strand at 277.060 kb on - strand at 277.167 kb on + strand, within Pf6N2E2_219 at 277.167 kb on + strand, within Pf6N2E2_219 at 277.167 kb on + strand, within Pf6N2E2_219 at 277.168 kb on - strand, within Pf6N2E2_219 at 277.225 kb on + strand, within Pf6N2E2_219 at 277.225 kb on + strand, within Pf6N2E2_219 at 277.226 kb on - strand, within Pf6N2E2_219 at 277.404 kb on + strand, within Pf6N2E2_219 at 277.404 kb on + strand, within Pf6N2E2_219 at 277.405 kb on - strand, within Pf6N2E2_219 at 277.405 kb on - strand, within Pf6N2E2_219 at 277.621 kb on - strand, within Pf6N2E2_219 at 277.638 kb on + strand at 277.638 kb on + strand at 277.936 kb on + strand, within Pf6N2E2_220 at 277.937 kb on - strand, within Pf6N2E2_220
Per-strain Table
Position Strand Gene LocusTag Fraction 20 mM putrescine remove 275,607 + Pf6N2E2_217 0.34 -0.2 275,607 + Pf6N2E2_217 0.34 +1.0 275,620 - Pf6N2E2_217 0.35 -0.6 275,779 + Pf6N2E2_217 0.47 +0.4 276,456 - +0.2 276,458 + +0.6 276,458 + -0.6 276,458 + +1.4 276,458 + -0.2 276,458 + -1.2 276,479 + +1.0 276,565 + -1.2 276,565 + -0.8 276,565 + -0.7 276,566 - -0.6 276,614 + Pf6N2E2_218 0.14 +0.8 276,614 + Pf6N2E2_218 0.14 -0.5 276,614 + Pf6N2E2_218 0.14 -1.2 276,798 + Pf6N2E2_218 0.55 -2.2 276,798 + Pf6N2E2_218 0.55 -0.2 276,799 - Pf6N2E2_218 0.55 -0.6 276,935 + Pf6N2E2_218 0.85 -1.2 276,935 + Pf6N2E2_218 0.85 -1.4 276,979 + +0.4 276,983 + -0.1 276,983 + -0.2 276,983 + +1.4 276,984 - -0.2 276,998 + -0.1 276,999 - -1.0 277,060 - -0.3 277,060 - +0.8 277,060 - -1.8 277,060 - -0.8 277,060 - +0.5 277,167 + Pf6N2E2_219 0.21 +0.0 277,167 + Pf6N2E2_219 0.21 +0.4 277,167 + Pf6N2E2_219 0.21 -0.8 277,168 - Pf6N2E2_219 0.21 -1.8 277,225 + Pf6N2E2_219 0.30 -0.5 277,225 + Pf6N2E2_219 0.30 -0.6 277,226 - Pf6N2E2_219 0.30 -0.2 277,404 + Pf6N2E2_219 0.56 -0.2 277,404 + Pf6N2E2_219 0.56 +0.1 277,405 - Pf6N2E2_219 0.56 +1.4 277,405 - Pf6N2E2_219 0.56 +0.2 277,621 - Pf6N2E2_219 0.88 +1.8 277,638 + -1.7 277,638 + +0.6 277,936 + Pf6N2E2_220 0.16 +0.4 277,937 - Pf6N2E2_220 0.16 +0.6
Or see this region's nucleotide sequence