Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1293

Experiment: 20 mM putrescine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1292 and Pf6N2E2_1293 are separated by 332 nucleotidesPf6N2E2_1293 and Pf6N2E2_1294 are separated by 15 nucleotides Pf6N2E2_1292 - Methyl-accepting chemotaxis protein, at 1,525,230 to 1,527,026 _1292 Pf6N2E2_1293 - COG2879, Hypothetical small protein yjiX, at 1,527,359 to 1,527,556 _1293 Pf6N2E2_1294 - Carbon starvation protein A, at 1,527,572 to 1,529,632 _1294 Position (kb) 1527 1528Strain fitness (log2 ratio) -1 0 1 2at 1526.652 kb on + strand, within Pf6N2E2_1292at 1526.652 kb on + strand, within Pf6N2E2_1292at 1526.652 kb on + strand, within Pf6N2E2_1292at 1526.653 kb on - strand, within Pf6N2E2_1292at 1526.653 kb on - strand, within Pf6N2E2_1292at 1526.653 kb on - strand, within Pf6N2E2_1292at 1526.664 kb on + strand, within Pf6N2E2_1292at 1526.763 kb on + strand, within Pf6N2E2_1292at 1526.911 kb on - strandat 1526.911 kb on - strandat 1526.911 kb on - strandat 1526.950 kb on + strandat 1526.950 kb on + strandat 1527.053 kb on + strandat 1527.053 kb on + strandat 1527.053 kb on + strandat 1527.053 kb on + strandat 1527.053 kb on + strandat 1527.053 kb on + strandat 1527.525 kb on + strand, within Pf6N2E2_1293at 1527.529 kb on + strand, within Pf6N2E2_1293at 1527.529 kb on + strand, within Pf6N2E2_1293at 1528.461 kb on + strand, within Pf6N2E2_1294

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Per-strain Table

Position Strand Gene LocusTag Fraction 20 mM putrescine
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1,526,652 + Pf6N2E2_1292 0.79 -0.2
1,526,652 + Pf6N2E2_1292 0.79 -0.7
1,526,652 + Pf6N2E2_1292 0.79 -0.7
1,526,653 - Pf6N2E2_1292 0.79 +0.3
1,526,653 - Pf6N2E2_1292 0.79 +0.3
1,526,653 - Pf6N2E2_1292 0.79 -0.1
1,526,664 + Pf6N2E2_1292 0.80 +0.3
1,526,763 + Pf6N2E2_1292 0.85 -1.3
1,526,911 - +0.1
1,526,911 - -0.0
1,526,911 - -0.4
1,526,950 + -0.7
1,526,950 + +1.6
1,527,053 + +0.1
1,527,053 + -0.3
1,527,053 + -0.7
1,527,053 + -0.5
1,527,053 + +0.1
1,527,053 + -0.7
1,527,525 + Pf6N2E2_1293 0.84 -1.2
1,527,529 + Pf6N2E2_1293 0.86 +0.6
1,527,529 + Pf6N2E2_1293 0.86 -0.7
1,528,461 + Pf6N2E2_1294 0.43 +1.8

Or see this region's nucleotide sequence