Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3708

Experiment: 50% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3707 and Pf6N2E2_3708 are separated by 335 nucleotidesPf6N2E2_3708 and Pf6N2E2_3709 are separated by 16 nucleotides Pf6N2E2_3707 - Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases, at 4,321,380 to 4,322,753 _3707 Pf6N2E2_3708 - predicted biotin regulatory protein BioR (GntR family), at 4,323,089 to 4,324,090 _3708 Pf6N2E2_3709 - Chromosome (plasmid) partitioning protein ParA, at 4,324,107 to 4,324,874 _3709 Position (kb) 4323 4324 4325Strain fitness (log2 ratio) -1 0 1 2at 4322.766 kb on - strandat 4322.772 kb on + strandat 4322.813 kb on + strandat 4322.814 kb on - strandat 4322.831 kb on - strandat 4322.831 kb on - strandat 4322.831 kb on - strandat 4322.868 kb on - strandat 4322.868 kb on - strandat 4322.936 kb on - strandat 4322.939 kb on + strandat 4322.939 kb on + strandat 4322.939 kb on + strandat 4322.940 kb on - strandat 4322.940 kb on - strandat 4322.940 kb on - strandat 4322.944 kb on + strandat 4322.944 kb on + strandat 4322.944 kb on + strandat 4322.944 kb on + strandat 4322.945 kb on - strandat 4322.945 kb on - strandat 4322.945 kb on - strandat 4322.945 kb on - strandat 4322.962 kb on - strandat 4322.967 kb on + strandat 4323.150 kb on + strandat 4323.150 kb on + strandat 4323.150 kb on + strandat 4323.150 kb on + strandat 4323.150 kb on + strandat 4323.151 kb on - strandat 4323.195 kb on + strand, within Pf6N2E2_3708at 4323.195 kb on + strand, within Pf6N2E2_3708at 4323.195 kb on + strand, within Pf6N2E2_3708at 4323.195 kb on + strand, within Pf6N2E2_3708at 4323.196 kb on - strand, within Pf6N2E2_3708at 4323.196 kb on - strand, within Pf6N2E2_3708at 4323.198 kb on + strand, within Pf6N2E2_3708at 4323.198 kb on + strand, within Pf6N2E2_3708at 4323.198 kb on + strand, within Pf6N2E2_3708at 4323.198 kb on + strand, within Pf6N2E2_3708at 4323.308 kb on + strand, within Pf6N2E2_3708at 4323.463 kb on + strand, within Pf6N2E2_3708at 4323.463 kb on + strand, within Pf6N2E2_3708at 4323.463 kb on + strand, within Pf6N2E2_3708at 4323.464 kb on - strand, within Pf6N2E2_3708at 4323.464 kb on - strand, within Pf6N2E2_3708at 4323.464 kb on - strand, within Pf6N2E2_3708at 4323.510 kb on - strand, within Pf6N2E2_3708at 4323.636 kb on - strand, within Pf6N2E2_3708at 4323.951 kb on + strand, within Pf6N2E2_3708at 4323.951 kb on + strand, within Pf6N2E2_3708at 4323.952 kb on - strand, within Pf6N2E2_3708at 4324.070 kb on + strandat 4324.228 kb on + strand, within Pf6N2E2_3709at 4324.228 kb on + strand, within Pf6N2E2_3709at 4324.343 kb on + strand, within Pf6N2E2_3709at 4324.384 kb on + strand, within Pf6N2E2_3709at 4324.385 kb on - strand, within Pf6N2E2_3709at 4324.504 kb on + strand, within Pf6N2E2_3709at 4324.504 kb on + strand, within Pf6N2E2_3709at 4324.633 kb on + strand, within Pf6N2E2_3709at 4324.633 kb on + strand, within Pf6N2E2_3709at 4324.633 kb on + strand, within Pf6N2E2_3709at 4324.633 kb on + strand, within Pf6N2E2_3709at 4324.633 kb on + strand, within Pf6N2E2_3709at 4324.634 kb on - strand, within Pf6N2E2_3709at 4324.638 kb on - strand, within Pf6N2E2_3709at 4324.700 kb on + strand, within Pf6N2E2_3709at 4324.701 kb on - strand, within Pf6N2E2_3709at 4324.738 kb on + strand, within Pf6N2E2_3709at 4324.739 kb on - strand, within Pf6N2E2_3709at 4324.890 kb on + strandat 4324.890 kb on + strandat 4324.909 kb on + strandat 4324.910 kb on - strandat 4324.910 kb on - strandat 4324.910 kb on - strandat 4324.910 kb on - strandat 4324.910 kb on - strandat 4324.910 kb on - strandat 4324.910 kb on - strandat 4324.910 kb on - strandat 4324.912 kb on + strandat 4324.912 kb on + strandat 4324.913 kb on - strandat 4324.913 kb on - strandat 4324.913 kb on - strandat 4324.929 kb on + strandat 4324.929 kb on + strandat 4324.929 kb on + strandat 4324.930 kb on - strandat 4324.933 kb on + strandat 4324.933 kb on + strandat 4324.933 kb on + strandat 4324.934 kb on - strandat 4324.954 kb on - strandat 4324.954 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 50% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine
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4,322,766 - +0.4
4,322,772 + -0.0
4,322,813 + -0.2
4,322,814 - -0.6
4,322,831 - +0.5
4,322,831 - +0.2
4,322,831 - +0.2
4,322,868 - -0.7
4,322,868 - -1.2
4,322,936 - -0.2
4,322,939 + +0.4
4,322,939 + +1.1
4,322,939 + +0.9
4,322,940 - +0.8
4,322,940 - +0.1
4,322,940 - +1.1
4,322,944 + +0.4
4,322,944 + +1.4
4,322,944 + +0.4
4,322,944 + +1.4
4,322,945 - +0.4
4,322,945 - -0.7
4,322,945 - +0.4
4,322,945 - +0.4
4,322,962 - +0.7
4,322,967 + +0.4
4,323,150 + +1.7
4,323,150 + +0.1
4,323,150 + -0.0
4,323,150 + -0.5
4,323,150 + +0.2
4,323,151 - -0.8
4,323,195 + Pf6N2E2_3708 0.11 -0.5
4,323,195 + Pf6N2E2_3708 0.11 -0.1
4,323,195 + Pf6N2E2_3708 0.11 +2.2
4,323,195 + Pf6N2E2_3708 0.11 +0.5
4,323,196 - Pf6N2E2_3708 0.11 -0.7
4,323,196 - Pf6N2E2_3708 0.11 -0.6
4,323,198 + Pf6N2E2_3708 0.11 +0.4
4,323,198 + Pf6N2E2_3708 0.11 -0.5
4,323,198 + Pf6N2E2_3708 0.11 +0.7
4,323,198 + Pf6N2E2_3708 0.11 -0.7
4,323,308 + Pf6N2E2_3708 0.22 -1.5
4,323,463 + Pf6N2E2_3708 0.37 -1.6
4,323,463 + Pf6N2E2_3708 0.37 +0.3
4,323,463 + Pf6N2E2_3708 0.37 +1.7
4,323,464 - Pf6N2E2_3708 0.37 -1.6
4,323,464 - Pf6N2E2_3708 0.37 +1.4
4,323,464 - Pf6N2E2_3708 0.37 -1.6
4,323,510 - Pf6N2E2_3708 0.42 -1.3
4,323,636 - Pf6N2E2_3708 0.55 -0.9
4,323,951 + Pf6N2E2_3708 0.86 -0.6
4,323,951 + Pf6N2E2_3708 0.86 -1.4
4,323,952 - Pf6N2E2_3708 0.86 -0.2
4,324,070 + -0.4
4,324,228 + Pf6N2E2_3709 0.16 -0.0
4,324,228 + Pf6N2E2_3709 0.16 +1.7
4,324,343 + Pf6N2E2_3709 0.31 -0.9
4,324,384 + Pf6N2E2_3709 0.36 +0.1
4,324,385 - Pf6N2E2_3709 0.36 +0.9
4,324,504 + Pf6N2E2_3709 0.52 +0.4
4,324,504 + Pf6N2E2_3709 0.52 +0.7
4,324,633 + Pf6N2E2_3709 0.68 +1.5
4,324,633 + Pf6N2E2_3709 0.68 +0.4
4,324,633 + Pf6N2E2_3709 0.68 +0.1
4,324,633 + Pf6N2E2_3709 0.68 +1.2
4,324,633 + Pf6N2E2_3709 0.68 +0.2
4,324,634 - Pf6N2E2_3709 0.69 +0.1
4,324,638 - Pf6N2E2_3709 0.69 +0.8
4,324,700 + Pf6N2E2_3709 0.77 -0.0
4,324,701 - Pf6N2E2_3709 0.77 +0.4
4,324,738 + Pf6N2E2_3709 0.82 +1.1
4,324,739 - Pf6N2E2_3709 0.82 +0.2
4,324,890 + +1.1
4,324,890 + +0.7
4,324,909 + +1.2
4,324,910 - -0.2
4,324,910 - -0.6
4,324,910 - +0.2
4,324,910 - +0.6
4,324,910 - -0.0
4,324,910 - -0.1
4,324,910 - -0.9
4,324,910 - +0.4
4,324,912 + +0.4
4,324,912 + +0.4
4,324,913 - +0.7
4,324,913 - +0.4
4,324,913 - +0.4
4,324,929 + +1.1
4,324,929 + -0.4
4,324,929 + +0.0
4,324,930 - +1.4
4,324,933 + -0.5
4,324,933 + +0.4
4,324,933 + +0.2
4,324,934 - -0.6
4,324,954 - +0.4
4,324,954 - -0.0

Or see this region's nucleotide sequence