Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2413

Experiment: 50% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2411 and Pf6N2E2_2412 are separated by 62 nucleotidesPf6N2E2_2412 and Pf6N2E2_2413 are separated by 93 nucleotidesPf6N2E2_2413 and Pf6N2E2_2414 are separated by 206 nucleotides Pf6N2E2_2411 - Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4), at 2,863,521 to 2,865,491 _2411 Pf6N2E2_2412 - Inhibitor of the KinA pathway to sporulation, predicted exonuclease, at 2,865,554 to 2,866,096 _2412 Pf6N2E2_2413 - FIG074102: hypothetical protein, at 2,866,190 to 2,866,474 _2413 Pf6N2E2_2414 - Flavodoxin reductases (ferredoxin-NADPH reductases) family 1, at 2,866,681 to 2,867,490 _2414 Position (kb) 2866 2867Strain fitness (log2 ratio) -2 -1 0 1at 2865.512 kb on + strandat 2865.860 kb on + strand, within Pf6N2E2_2412at 2866.148 kb on + strandat 2866.149 kb on - strandat 2866.195 kb on + strandat 2866.195 kb on + strandat 2866.196 kb on - strandat 2866.196 kb on - strandat 2866.196 kb on - strandat 2866.208 kb on + strandat 2866.209 kb on - strandat 2866.289 kb on + strand, within Pf6N2E2_2413at 2866.290 kb on - strand, within Pf6N2E2_2413at 2866.451 kb on + strandat 2866.452 kb on - strandat 2866.485 kb on + strandat 2866.485 kb on + strandat 2866.485 kb on + strandat 2866.505 kb on + strandat 2866.506 kb on - strandat 2866.610 kb on - strandat 2866.778 kb on + strand, within Pf6N2E2_2414at 2867.061 kb on + strand, within Pf6N2E2_2414at 2867.061 kb on + strand, within Pf6N2E2_2414at 2867.062 kb on - strand, within Pf6N2E2_2414at 2867.130 kb on + strand, within Pf6N2E2_2414at 2867.131 kb on - strand, within Pf6N2E2_2414at 2867.208 kb on + strand, within Pf6N2E2_2414at 2867.209 kb on - strand, within Pf6N2E2_2414at 2867.209 kb on - strand, within Pf6N2E2_2414at 2867.209 kb on - strand, within Pf6N2E2_2414at 2867.209 kb on - strand, within Pf6N2E2_2414

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Per-strain Table

Position Strand Gene LocusTag Fraction 50% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine
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2,865,512 + -0.1
2,865,860 + Pf6N2E2_2412 0.56 -0.1
2,866,148 + +0.1
2,866,149 - +0.0
2,866,195 + +0.4
2,866,195 + -0.5
2,866,196 - +0.8
2,866,196 - -0.1
2,866,196 - -0.1
2,866,208 + -0.8
2,866,209 - +0.5
2,866,289 + Pf6N2E2_2413 0.35 -0.3
2,866,290 - Pf6N2E2_2413 0.35 -2.1
2,866,451 + +0.5
2,866,452 - -0.1
2,866,485 + -0.2
2,866,485 + -2.1
2,866,485 + +0.8
2,866,505 + -1.2
2,866,506 - -0.9
2,866,610 - -0.3
2,866,778 + Pf6N2E2_2414 0.12 -0.4
2,867,061 + Pf6N2E2_2414 0.47 -0.7
2,867,061 + Pf6N2E2_2414 0.47 +0.6
2,867,062 - Pf6N2E2_2414 0.47 -1.7
2,867,130 + Pf6N2E2_2414 0.55 +0.1
2,867,131 - Pf6N2E2_2414 0.56 +0.1
2,867,208 + Pf6N2E2_2414 0.65 +0.8
2,867,209 - Pf6N2E2_2414 0.65 +0.0
2,867,209 - Pf6N2E2_2414 0.65 -0.9
2,867,209 - Pf6N2E2_2414 0.65 +0.3
2,867,209 - Pf6N2E2_2414 0.65 -0.9

Or see this region's nucleotide sequence