Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS31635

Experiment: Glucose (C) and L-Glutamine (N); with TAPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Glucose (C) and L-Glutamine (N); with TAPS
3,335,448	+		PFLU_RS14915	0.18	-1.4
3,335,448	+		PFLU_RS14915	0.18	+1.6
3,335,448	+		PFLU_RS14915	0.18	-0.3
3,335,448	+		PFLU_RS14915	0.18	-1.2
3,335,448	+		PFLU_RS14915	0.18	+1.2
3,335,448	+		PFLU_RS14915	0.18	-0.4
3,335,448	+		PFLU_RS14915	0.18	+0.2
3,335,448	+		PFLU_RS14915	0.18	+0.6
3,335,448	+		PFLU_RS14915	0.18	+0.5
3,335,448	+		PFLU_RS14915	0.18	+1.9
3,335,448	+		PFLU_RS14915	0.18	-0.6
3,335,448	+		PFLU_RS14915	0.18	-0.8
3,335,448	+		PFLU_RS14915	0.18	+0.2
3,335,448	+		PFLU_RS14915	0.18	+1.2
3,335,449	-		PFLU_RS14915	0.18	+2.2
3,335,449	-		PFLU_RS14915	0.18	+0.2
3,335,449	-		PFLU_RS14915	0.18	-1.0
3,335,452	+		PFLU_RS14915	0.18	-0.8
3,335,452	+		PFLU_RS14915	0.18	+1.0
3,335,452	+		PFLU_RS14915	0.18	+0.7
3,335,452	+		PFLU_RS14915	0.18	-0.3
3,335,453	-		PFLU_RS14915	0.18	-1.2
3,335,453	-		PFLU_RS14915	0.18	-1.7
3,335,453	-		PFLU_RS14915	0.18	+0.2
3,335,480	+		PFLU_RS14915	0.21	-0.2
3,335,481	-		PFLU_RS14915	0.22	+0.4
3,335,486	-		PFLU_RS14915	0.22	-0.9
3,335,486	-		PFLU_RS14915	0.22	+1.7
3,335,498	+		PFLU_RS14915	0.23	-0.3
3,335,498	+		PFLU_RS14915	0.23	-0.0
3,335,498	+		PFLU_RS14915	0.23	+0.7
3,335,498	+		PFLU_RS14915	0.23	-0.9
3,335,499	-		PFLU_RS14915	0.24	+0.6
3,335,499	-		PFLU_RS14915	0.24	-0.2
3,335,499	-		PFLU_RS14915	0.24	+1.6
3,335,499	-		PFLU_RS14915	0.24	+0.4
3,335,506	+		PFLU_RS14915	0.24	+0.3
3,335,507	-		PFLU_RS14915	0.25	-0.4
3,335,507	-		PFLU_RS14915	0.25	+1.2
3,335,510	+		PFLU_RS14915	0.25	-1.3
3,335,510	+		PFLU_RS14915	0.25	-0.2
3,335,510	+		PFLU_RS14915	0.25	+0.3
3,335,510	+		PFLU_RS14915	0.25	+2.0
3,335,511	-		PFLU_RS14915	0.25	+1.2
3,335,511	-		PFLU_RS14915	0.25	+0.2
3,335,511	-		PFLU_RS14915	0.25	+1.5
3,335,560	+		PFLU_RS14915	0.31	-0.0
3,335,560	+		PFLU_RS14915	0.31	-1.4
3,335,560	+		PFLU_RS14915	0.31	+0.4
3,335,560	+		PFLU_RS14915	0.31	+1.2
3,335,560	+		PFLU_RS14915	0.31	-0.2
3,335,560	+		PFLU_RS14915	0.31	+0.2
3,335,561	-		PFLU_RS14915	0.31	-0.3
3,335,561	-		PFLU_RS14915	0.31	+1.2
3,335,561	-		PFLU_RS14915	0.31	-1.2
3,335,561	-		PFLU_RS14915	0.31	+1.0
3,335,561	-		PFLU_RS14915	0.31	+0.8
3,335,623	+		PFLU_RS14915	0.38	-1.2
3,335,623	+		PFLU_RS14915	0.38	+2.7
3,335,624	-		PFLU_RS14915	0.38	+1.7
3,335,661	+		PFLU_RS14915	0.42	-1.0
3,335,679	+		PFLU_RS14915	0.44	-0.2
3,335,679	+		PFLU_RS14915	0.44	+1.7
3,335,728	+		PFLU_RS14915	0.50	+0.4
3,335,729	-		PFLU_RS14915	0.50	+2.7
3,335,729	-		PFLU_RS14915	0.50	+1.2
3,335,729	-		PFLU_RS14915	0.50	+0.7
3,335,778	+		PFLU_RS14915	0.56	+1.6
3,335,778	+		PFLU_RS14915	0.56	-2.3
3,335,778	+		PFLU_RS14915	0.56	-1.2
3,335,778	+		PFLU_RS14915	0.56	-2.2
3,335,779	-		PFLU_RS14915	0.56	+1.3
3,335,779	-		PFLU_RS14915	0.56	-0.6
3,335,785	-		PFLU_RS14915	0.56	+0.2
3,335,785	-		PFLU_RS14915	0.56	+1.3
3,335,818	+		PFLU_RS14915	0.60	+0.9
3,335,818	+		PFLU_RS14915	0.60	-2.0
3,335,839	+		PFLU_RS14915	0.63	-2.9
3,335,839	+		PFLU_RS14915	0.63	+1.5
3,335,840	-		PFLU_RS14915	0.63	+1.6
3,335,852	+		PFLU_RS14915	0.64	-0.4
3,336,033	-		PFLU_RS14915	0.85	-1.0
3,336,058	+		PFLU_RS14915	0.88	+0.8
3,336,059	-		PFLU_RS14915	0.88	-0.8
3,336,132	+				+1.1
3,336,160	+				+1.2
3,336,160	+				+1.3
3,336,163	+				+0.8
3,336,163	+				+0.2
3,336,164	-				+1.6
3,336,164	-				+0.4
3,336,164	-				-0.6
3,336,215	+				-1.1
3,336,216	-				+2.2
3,336,216	-				-1.2
3,336,312	+				+0.1
3,336,312	+				+0.3
3,336,335	+				+1.2
3,336,353	+				-0.4
3,336,354	-				+2.5
3,336,354	-				-0.1
3,336,396	+		PFLU_RS31635	0.12	-0.2
3,336,397	-		PFLU_RS31635	0.13	-1.8
3,336,397	-		PFLU_RS31635	0.13	-0.2
3,336,448	+		PFLU_RS31635	0.46	-2.3
3,336,449	-		PFLU_RS31635	0.46	-0.8
3,336,501	+		PFLU_RS31635	0.79	+0.6
3,336,502	-		PFLU_RS31635	0.80	+0.2
3,336,502	-		PFLU_RS31635	0.80	+0.7
3,336,619	+				-0.2
3,336,620	-				+0.7
3,336,620	-				-0.8
3,336,620	-				+0.2
3,336,620	-				-1.6
3,336,626	+				-2.3
3,336,626	+				-1.2
3,336,626	+				+2.2
3,336,626	+				-0.3
3,336,626	+				+1.5
3,336,627	-				-1.1
3,336,627	-				-2.2
3,336,627	-				+0.6
3,336,627	-				+0.2
3,336,627	-				+1.2
3,336,627	-				+0.8
3,336,768	+		PFLU_RS30835	0.51	+1.2
3,336,768	+		PFLU_RS30835	0.51	+0.0
3,336,768	+		PFLU_RS30835	0.51	+1.0
3,336,768	+		PFLU_RS30835	0.51	+1.6
3,336,768	+		PFLU_RS30835	0.51	+1.2
3,336,768	+		PFLU_RS30835	0.51	+0.7
3,336,768	+		PFLU_RS30835	0.51	-1.5
3,336,768	+		PFLU_RS30835	0.51	+0.4
3,336,769	-		PFLU_RS30835	0.51	+0.7
3,336,769	-		PFLU_RS30835	0.51	-1.2
3,336,769	-		PFLU_RS30835	0.51	-0.4
3,336,769	-		PFLU_RS30835	0.51	-0.8
3,336,769	-		PFLU_RS30835	0.51	-1.5
3,336,769	-		PFLU_RS30835	0.51	+0.7
3,336,769	-		PFLU_RS30835	0.51	-1.2
3,336,772	+		PFLU_RS30835	0.52	-0.1
3,336,773	-		PFLU_RS30835	0.52	-0.3
3,336,773	-		PFLU_RS30835	0.52	+1.2
3,336,787	-		PFLU_RS30835	0.57	+0.2
3,336,787	-		PFLU_RS30835	0.57	+0.7
3,336,787	-		PFLU_RS30835	0.57	-0.3
3,336,787	-		PFLU_RS30835	0.57	-0.2
3,336,835	-		PFLU_RS30835	0.74	+0.8
3,336,848	+		PFLU_RS30835	0.79	+0.6
3,336,848	+		PFLU_RS30835	0.79	+1.8
3,336,848	+		PFLU_RS30835	0.79	-1.6
3,336,848	+		PFLU_RS30835	0.79	+0.7
3,336,848	+		PFLU_RS30835	0.79	-1.0
3,336,848	+		PFLU_RS30835	0.79	+0.6
3,336,848	+		PFLU_RS30835	0.79	-0.6
3,336,848	+		PFLU_RS30835	0.79	-0.8
3,336,849	-		PFLU_RS30835	0.79	+0.7
3,336,866	+		PFLU_RS30835	0.85	-2.6
3,336,877	+		PFLU_RS30835	0.89	-1.2
3,336,926	+				-0.0
3,336,964	-				-1.4
3,336,964	-				-0.2
3,336,999	+				-2.1
3,336,999	+				-1.6
3,337,004	-				+0.3
3,337,004	-				+1.2
3,337,004	-				-0.8
3,337,004	-				-0.8
3,337,007	+				+0.3
3,337,007	+				+1.2
3,337,007	+				+0.4
3,337,007	+				-0.7
3,337,007	+				-0.5
3,337,007	+				-0.4
3,337,008	-				+1.2
3,337,008	-				+1.2
3,337,008	-				-0.0
3,337,008	-				-0.3
3,337,008	-				-1.1
3,337,008	-				+3.2
3,337,064	-				-1.4
3,337,183	+				-0.1
3,337,184	-				-0.7
3,337,184	-				-0.6
3,337,184	-				+0.7
3,337,184	-				+1.2
3,337,184	-				+0.7
3,337,186	-				-0.3
3,337,203	+				+1.7
3,337,204	-				+0.2
3,337,204	-				+0.7
3,337,204	-				+0.4
3,337,204	-				+1.2
3,337,204	-				-0.2
3,337,218	+				+1.5
3,337,232	+				+1.2
3,337,232	+				+1.2
3,337,241	+				+1.2
3,337,242	-				-1.3
3,337,242	-				+0.8
3,337,278	-				-0.5
3,337,346	-				+2.2
3,337,421	+				+0.4
3,337,421	+				-0.8
3,337,421	+				+2.2
3,337,421	+				+0.5
3,337,422	-				+0.8
3,337,498	+		PFLU_RS14920	0.12	+0.5
3,337,498	+		PFLU_RS14920	0.12	-0.8