Experiment: Glucose (C) and L-Glutamine (N); with TAPS
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS23930 and PFLU_RS23935 are separated by 7 nucleotides PFLU_RS23935 and PFLU_RS23940 are separated by 177 nucleotides PFLU_RS23940 and PFLU_RS23945 are separated by 65 nucleotides
PFLU_RS23930: PFLU_RS23930 - translation initiation factor 2, at 5,360,374 to 5,360,781
_RS23930
PFLU_RS23935: PFLU_RS23935 - response regulator transcription factor, at 5,360,789 to 5,361,466
_RS23935
PFLU_RS23940: PFLU_RS23940 - hypothetical protein, at 5,361,644 to 5,362,108
_RS23940
PFLU_RS23945: PFLU_RS23945 - HAMP domain-containing histidine kinase, at 5,362,174 to 5,363,517
_RS23945
Position (kb) 5361
5362
5363 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5360.775 kb on - strand at 5360.775 kb on - strand at 5360.803 kb on - strand at 5360.803 kb on - strand at 5360.803 kb on - strand at 5360.808 kb on + strand at 5360.808 kb on + strand at 5360.808 kb on + strand at 5360.808 kb on + strand at 5360.808 kb on + strand at 5360.808 kb on + strand at 5360.808 kb on + strand at 5360.808 kb on + strand at 5360.808 kb on + strand at 5360.809 kb on - strand at 5360.809 kb on - strand at 5360.809 kb on - strand at 5360.809 kb on - strand at 5360.809 kb on - strand at 5360.809 kb on - strand at 5360.809 kb on - strand at 5360.809 kb on - strand at 5360.809 kb on - strand at 5360.809 kb on - strand at 5360.809 kb on - strand at 5360.809 kb on - strand at 5360.809 kb on - strand at 5360.946 kb on + strand, within PFLU_RS23935 at 5360.946 kb on + strand, within PFLU_RS23935 at 5360.946 kb on + strand, within PFLU_RS23935 at 5360.946 kb on + strand, within PFLU_RS23935 at 5360.946 kb on + strand, within PFLU_RS23935 at 5360.946 kb on + strand, within PFLU_RS23935 at 5360.946 kb on + strand, within PFLU_RS23935 at 5360.946 kb on + strand, within PFLU_RS23935 at 5360.947 kb on - strand, within PFLU_RS23935 at 5360.947 kb on - strand, within PFLU_RS23935 at 5360.947 kb on - strand, within PFLU_RS23935 at 5360.947 kb on - strand, within PFLU_RS23935 at 5360.947 kb on - strand, within PFLU_RS23935 at 5360.947 kb on - strand, within PFLU_RS23935 at 5360.947 kb on - strand, within PFLU_RS23935 at 5360.947 kb on - strand, within PFLU_RS23935 at 5360.947 kb on - strand, within PFLU_RS23935 at 5360.947 kb on - strand, within PFLU_RS23935 at 5360.947 kb on - strand, within PFLU_RS23935 at 5360.947 kb on - strand, within PFLU_RS23935 at 5361.052 kb on + strand, within PFLU_RS23935 at 5361.083 kb on + strand, within PFLU_RS23935 at 5361.083 kb on + strand, within PFLU_RS23935 at 5361.083 kb on + strand, within PFLU_RS23935 at 5361.084 kb on - strand, within PFLU_RS23935 at 5361.084 kb on - strand, within PFLU_RS23935 at 5361.167 kb on - strand, within PFLU_RS23935 at 5361.338 kb on - strand, within PFLU_RS23935 at 5361.380 kb on - strand, within PFLU_RS23935 at 5361.449 kb on + strand at 5361.449 kb on + strand at 5361.450 kb on - strand at 5361.450 kb on - strand at 5361.452 kb on + strand at 5361.452 kb on + strand at 5361.452 kb on + strand at 5361.452 kb on + strand at 5361.452 kb on + strand at 5361.452 kb on + strand at 5361.452 kb on + strand at 5361.452 kb on + strand at 5361.452 kb on + strand at 5361.452 kb on + strand at 5361.452 kb on + strand at 5361.452 kb on + strand at 5361.452 kb on + strand at 5361.452 kb on + strand at 5361.452 kb on + strand at 5361.453 kb on - strand at 5361.453 kb on - strand at 5361.453 kb on - strand at 5361.453 kb on - strand at 5361.453 kb on - strand at 5361.453 kb on - strand at 5361.453 kb on - strand at 5361.453 kb on - strand at 5361.453 kb on - strand at 5361.453 kb on - strand at 5361.453 kb on - strand at 5361.453 kb on - strand at 5361.455 kb on + strand at 5361.455 kb on + strand at 5361.455 kb on + strand at 5361.455 kb on + strand at 5361.455 kb on + strand at 5361.455 kb on + strand at 5361.455 kb on + strand at 5361.455 kb on + strand at 5361.455 kb on + strand at 5361.455 kb on + strand at 5361.456 kb on - strand at 5361.456 kb on - strand at 5361.456 kb on - strand at 5361.456 kb on - strand at 5361.456 kb on - strand at 5361.456 kb on - strand at 5361.487 kb on - strand at 5361.561 kb on + strand at 5361.562 kb on - strand at 5361.596 kb on + strand at 5361.597 kb on - strand at 5361.597 kb on - strand at 5361.597 kb on - strand at 5361.597 kb on - strand at 5361.601 kb on + strand at 5361.601 kb on + strand at 5361.601 kb on + strand at 5361.601 kb on + strand at 5361.601 kb on + strand at 5361.601 kb on + strand at 5361.601 kb on + strand at 5361.601 kb on + strand at 5361.601 kb on + strand at 5361.601 kb on + strand at 5361.601 kb on + strand at 5361.601 kb on + strand at 5361.602 kb on - strand at 5361.602 kb on - strand at 5361.602 kb on - strand at 5361.602 kb on - strand at 5361.602 kb on - strand at 5361.625 kb on + strand at 5361.880 kb on + strand, within PFLU_RS23940 at 5361.881 kb on - strand, within PFLU_RS23940 at 5361.881 kb on - strand, within PFLU_RS23940 at 5361.881 kb on - strand, within PFLU_RS23940 at 5361.899 kb on + strand, within PFLU_RS23940 at 5361.899 kb on + strand, within PFLU_RS23940 at 5361.900 kb on - strand, within PFLU_RS23940 at 5361.900 kb on - strand, within PFLU_RS23940 at 5361.907 kb on + strand, within PFLU_RS23940 at 5361.908 kb on - strand, within PFLU_RS23940 at 5362.107 kb on - strand at 5362.107 kb on - strand at 5362.263 kb on + strand at 5362.263 kb on + strand at 5362.263 kb on + strand at 5362.263 kb on + strand at 5362.264 kb on - strand at 5362.264 kb on - strand at 5362.264 kb on - strand at 5362.264 kb on - strand at 5362.264 kb on - strand at 5362.264 kb on - strand at 5362.264 kb on - strand at 5362.264 kb on - strand at 5362.264 kb on - strand at 5362.333 kb on + strand, within PFLU_RS23945 at 5362.333 kb on + strand, within PFLU_RS23945 at 5362.334 kb on - strand, within PFLU_RS23945 at 5362.334 kb on - strand, within PFLU_RS23945 at 5362.334 kb on - strand, within PFLU_RS23945 at 5362.334 kb on - strand, within PFLU_RS23945 at 5362.334 kb on - strand, within PFLU_RS23945 at 5362.334 kb on - strand, within PFLU_RS23945 at 5362.380 kb on + strand, within PFLU_RS23945 at 5362.380 kb on + strand, within PFLU_RS23945 at 5362.380 kb on + strand, within PFLU_RS23945 at 5362.380 kb on + strand, within PFLU_RS23945 at 5362.381 kb on - strand, within PFLU_RS23945 at 5362.390 kb on + strand, within PFLU_RS23945 at 5362.391 kb on - strand, within PFLU_RS23945 at 5362.410 kb on - strand, within PFLU_RS23945 at 5362.443 kb on + strand, within PFLU_RS23945 at 5362.444 kb on - strand, within PFLU_RS23945 at 5362.444 kb on - strand, within PFLU_RS23945 at 5362.531 kb on + strand, within PFLU_RS23945 at 5362.531 kb on + strand, within PFLU_RS23945 at 5362.531 kb on + strand, within PFLU_RS23945 at 5362.531 kb on + strand, within PFLU_RS23945 at 5362.532 kb on - strand, within PFLU_RS23945 at 5362.532 kb on - strand, within PFLU_RS23945 at 5362.532 kb on - strand, within PFLU_RS23945 at 5362.532 kb on - strand, within PFLU_RS23945 at 5362.532 kb on - strand, within PFLU_RS23945 at 5362.532 kb on - strand, within PFLU_RS23945 at 5362.532 kb on - strand, within PFLU_RS23945 at 5362.558 kb on + strand, within PFLU_RS23945 at 5362.558 kb on + strand, within PFLU_RS23945 at 5362.558 kb on + strand, within PFLU_RS23945 at 5362.558 kb on + strand, within PFLU_RS23945 at 5362.558 kb on + strand, within PFLU_RS23945 at 5362.558 kb on + strand, within PFLU_RS23945 at 5362.559 kb on - strand, within PFLU_RS23945 at 5362.559 kb on - strand, within PFLU_RS23945 at 5362.559 kb on - strand, within PFLU_RS23945 at 5362.559 kb on - strand, within PFLU_RS23945 at 5362.559 kb on - strand, within PFLU_RS23945 at 5362.559 kb on - strand, within PFLU_RS23945 at 5362.559 kb on - strand, within PFLU_RS23945 at 5362.559 kb on - strand, within PFLU_RS23945 at 5362.559 kb on - strand, within PFLU_RS23945 at 5362.559 kb on - strand, within PFLU_RS23945 at 5362.570 kb on + strand, within PFLU_RS23945 at 5362.570 kb on + strand, within PFLU_RS23945 at 5362.570 kb on + strand, within PFLU_RS23945 at 5362.570 kb on + strand, within PFLU_RS23945 at 5362.570 kb on + strand, within PFLU_RS23945 at 5362.570 kb on + strand, within PFLU_RS23945 at 5362.571 kb on - strand, within PFLU_RS23945 at 5362.747 kb on + strand, within PFLU_RS23945 at 5362.747 kb on + strand, within PFLU_RS23945 at 5362.747 kb on + strand, within PFLU_RS23945 at 5362.747 kb on + strand, within PFLU_RS23945 at 5362.748 kb on - strand, within PFLU_RS23945 at 5362.748 kb on - strand, within PFLU_RS23945 at 5362.748 kb on - strand, within PFLU_RS23945 at 5362.748 kb on - strand, within PFLU_RS23945 at 5363.025 kb on - strand, within PFLU_RS23945
Per-strain Table
Position Strand Gene LocusTag Fraction Glucose (C) and L-Glutamine (N); with TAPS remove 5,360,775 - +1.9 5,360,775 - -0.4 5,360,803 - -1.3 5,360,803 - +0.4 5,360,803 - +0.5 5,360,808 + +0.5 5,360,808 + +0.5 5,360,808 + +0.2 5,360,808 + +2.2 5,360,808 + -1.1 5,360,808 + -0.3 5,360,808 + +1.7 5,360,808 + +0.3 5,360,808 + +0.7 5,360,809 - +0.8 5,360,809 - -0.3 5,360,809 - +1.5 5,360,809 - +1.9 5,360,809 - -1.6 5,360,809 - +0.1 5,360,809 - +0.4 5,360,809 - -1.5 5,360,809 - +0.7 5,360,809 - -0.1 5,360,809 - -0.5 5,360,809 - +0.9 5,360,809 - -2.1 5,360,946 + PFLU_RS23935 0.23 -0.1 5,360,946 + PFLU_RS23935 0.23 +0.1 5,360,946 + PFLU_RS23935 0.23 -0.7 5,360,946 + PFLU_RS23935 0.23 -0.5 5,360,946 + PFLU_RS23935 0.23 -0.3 5,360,946 + PFLU_RS23935 0.23 +0.4 5,360,946 + PFLU_RS23935 0.23 -0.2 5,360,946 + PFLU_RS23935 0.23 -0.1 5,360,947 - PFLU_RS23935 0.23 +0.2 5,360,947 - PFLU_RS23935 0.23 -0.1 5,360,947 - PFLU_RS23935 0.23 -0.9 5,360,947 - PFLU_RS23935 0.23 +0.1 5,360,947 - PFLU_RS23935 0.23 -1.3 5,360,947 - PFLU_RS23935 0.23 +0.5 5,360,947 - PFLU_RS23935 0.23 +0.8 5,360,947 - PFLU_RS23935 0.23 +0.7 5,360,947 - PFLU_RS23935 0.23 +0.7 5,360,947 - PFLU_RS23935 0.23 +0.0 5,360,947 - PFLU_RS23935 0.23 +0.5 5,360,947 - PFLU_RS23935 0.23 -0.8 5,361,052 + PFLU_RS23935 0.39 -0.5 5,361,083 + PFLU_RS23935 0.43 +0.4 5,361,083 + PFLU_RS23935 0.43 +0.9 5,361,083 + PFLU_RS23935 0.43 +1.0 5,361,084 - PFLU_RS23935 0.44 +0.6 5,361,084 - PFLU_RS23935 0.44 +0.4 5,361,167 - PFLU_RS23935 0.56 +0.1 5,361,338 - PFLU_RS23935 0.81 +0.9 5,361,380 - PFLU_RS23935 0.87 -1.5 5,361,449 + -2.9 5,361,449 + -0.2 5,361,450 - -1.5 5,361,450 - -0.2 5,361,452 + -0.1 5,361,452 + +0.3 5,361,452 + -0.1 5,361,452 + +0.2 5,361,452 + +0.2 5,361,452 + -0.8 5,361,452 + +0.5 5,361,452 + -0.9 5,361,452 + +0.9 5,361,452 + +0.5 5,361,452 + +1.1 5,361,452 + +0.8 5,361,452 + +0.7 5,361,452 + -0.1 5,361,452 + -1.1 5,361,453 - +0.6 5,361,453 - +0.4 5,361,453 - -0.1 5,361,453 - +1.4 5,361,453 - +0.9 5,361,453 - +1.2 5,361,453 - +0.3 5,361,453 - +0.1 5,361,453 - -0.4 5,361,453 - -0.1 5,361,453 - +0.4 5,361,453 - +0.1 5,361,455 + +1.4 5,361,455 + -0.6 5,361,455 + +1.5 5,361,455 + -2.1 5,361,455 + -2.6 5,361,455 + -0.7 5,361,455 + +0.7 5,361,455 + -2.0 5,361,455 + +0.2 5,361,455 + +1.7 5,361,456 - +0.6 5,361,456 - +0.1 5,361,456 - -1.3 5,361,456 - -1.2 5,361,456 - +0.3 5,361,456 - -1.2 5,361,487 - -0.3 5,361,561 + +1.1 5,361,562 - -0.6 5,361,596 + -2.1 5,361,597 - -1.1 5,361,597 - -0.0 5,361,597 - +0.5 5,361,597 - -0.4 5,361,601 + +0.3 5,361,601 + -0.1 5,361,601 + +0.9 5,361,601 + -1.1 5,361,601 + -1.5 5,361,601 + -0.2 5,361,601 + -0.4 5,361,601 + +1.1 5,361,601 + +0.8 5,361,601 + +0.6 5,361,601 + +0.9 5,361,601 + +1.0 5,361,602 - -2.1 5,361,602 - +0.9 5,361,602 - +0.4 5,361,602 - -0.1 5,361,602 - +0.6 5,361,625 + +0.2 5,361,880 + PFLU_RS23940 0.51 -0.6 5,361,881 - PFLU_RS23940 0.51 -0.7 5,361,881 - PFLU_RS23940 0.51 -1.1 5,361,881 - PFLU_RS23940 0.51 +0.4 5,361,899 + PFLU_RS23940 0.55 -2.2 5,361,899 + PFLU_RS23940 0.55 -0.4 5,361,900 - PFLU_RS23940 0.55 -0.3 5,361,900 - PFLU_RS23940 0.55 +0.5 5,361,907 + PFLU_RS23940 0.57 -1.5 5,361,908 - PFLU_RS23940 0.57 -0.2 5,362,107 - -0.1 5,362,107 - +0.8 5,362,263 + -1.6 5,362,263 + +1.2 5,362,263 + -0.4 5,362,263 + +0.5 5,362,264 - -0.3 5,362,264 - -0.1 5,362,264 - -0.2 5,362,264 - +0.2 5,362,264 - +0.2 5,362,264 - -0.4 5,362,264 - +0.1 5,362,264 - -1.8 5,362,264 - -0.9 5,362,333 + PFLU_RS23945 0.12 -0.3 5,362,333 + PFLU_RS23945 0.12 +0.1 5,362,334 - PFLU_RS23945 0.12 -2.1 5,362,334 - PFLU_RS23945 0.12 -0.6 5,362,334 - PFLU_RS23945 0.12 -0.1 5,362,334 - PFLU_RS23945 0.12 +1.3 5,362,334 - PFLU_RS23945 0.12 -0.6 5,362,334 - PFLU_RS23945 0.12 -1.1 5,362,380 + PFLU_RS23945 0.15 +0.6 5,362,380 + PFLU_RS23945 0.15 -0.4 5,362,380 + PFLU_RS23945 0.15 +0.1 5,362,380 + PFLU_RS23945 0.15 +1.1 5,362,381 - PFLU_RS23945 0.15 -0.9 5,362,390 + PFLU_RS23945 0.16 -0.5 5,362,391 - PFLU_RS23945 0.16 -0.1 5,362,410 - PFLU_RS23945 0.18 -2.4 5,362,443 + PFLU_RS23945 0.20 -0.3 5,362,444 - PFLU_RS23945 0.20 -1.1 5,362,444 - PFLU_RS23945 0.20 -0.2 5,362,531 + PFLU_RS23945 0.27 +0.4 5,362,531 + PFLU_RS23945 0.27 -0.9 5,362,531 + PFLU_RS23945 0.27 +0.4 5,362,531 + PFLU_RS23945 0.27 -1.5 5,362,532 - PFLU_RS23945 0.27 -0.2 5,362,532 - PFLU_RS23945 0.27 +0.6 5,362,532 - PFLU_RS23945 0.27 +0.5 5,362,532 - PFLU_RS23945 0.27 +1.2 5,362,532 - PFLU_RS23945 0.27 -2.1 5,362,532 - PFLU_RS23945 0.27 -2.8 5,362,532 - PFLU_RS23945 0.27 -1.9 5,362,558 + PFLU_RS23945 0.29 +1.7 5,362,558 + PFLU_RS23945 0.29 +1.9 5,362,558 + PFLU_RS23945 0.29 +0.9 5,362,558 + PFLU_RS23945 0.29 +0.7 5,362,558 + PFLU_RS23945 0.29 +0.6 5,362,558 + PFLU_RS23945 0.29 +0.5 5,362,559 - PFLU_RS23945 0.29 +1.4 5,362,559 - PFLU_RS23945 0.29 -0.8 5,362,559 - PFLU_RS23945 0.29 +0.7 5,362,559 - PFLU_RS23945 0.29 -1.0 5,362,559 - PFLU_RS23945 0.29 +2.7 5,362,559 - PFLU_RS23945 0.29 +0.1 5,362,559 - PFLU_RS23945 0.29 -0.2 5,362,559 - PFLU_RS23945 0.29 -0.4 5,362,559 - PFLU_RS23945 0.29 +1.1 5,362,559 - PFLU_RS23945 0.29 -0.4 5,362,570 + PFLU_RS23945 0.29 +0.4 5,362,570 + PFLU_RS23945 0.29 -0.1 5,362,570 + PFLU_RS23945 0.29 +0.2 5,362,570 + PFLU_RS23945 0.29 -1.8 5,362,570 + PFLU_RS23945 0.29 +0.1 5,362,570 + PFLU_RS23945 0.29 +1.1 5,362,571 - PFLU_RS23945 0.30 -2.6 5,362,747 + PFLU_RS23945 0.43 +0.4 5,362,747 + PFLU_RS23945 0.43 -0.9 5,362,747 + PFLU_RS23945 0.43 -0.6 5,362,747 + PFLU_RS23945 0.43 -1.6 5,362,748 - PFLU_RS23945 0.43 -1.1 5,362,748 - PFLU_RS23945 0.43 -0.6 5,362,748 - PFLU_RS23945 0.43 +0.6 5,362,748 - PFLU_RS23945 0.43 -0.8 5,363,025 - PFLU_RS23945 0.63 +1.2
Or see this region's nucleotide sequence