Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS19900

Experiment: Glucose (C) and L-Glutamine (N); with TAPS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS19890 and PFLU_RS19895 overlap by 4 nucleotidesPFLU_RS19895 and PFLU_RS19900 overlap by 4 nucleotidesPFLU_RS19900 and PFLU_RS19905 overlap by 26 nucleotidesPFLU_RS19905 and PFLU_RS19910 overlap by 4 nucleotides PFLU_RS19890: PFLU_RS19890 - type II secretion system secretin GspD, at 4,502,339 to 4,504,561 _RS19890 PFLU_RS19895: PFLU_RS19895 - general secretion pathway protein GspN, at 4,504,558 to 4,505,082 _RS19895 PFLU_RS19900: PFLU_RS19900 - general secretion pathway protein GspM, at 4,505,079 to 4,505,690 _RS19900 PFLU_RS19905: PFLU_RS19905 - general secretion pathway protein GspL, at 4,505,665 to 4,506,684 _RS19905 PFLU_RS19910: PFLU_RS19910 - hypothetical protein, at 4,506,681 to 4,507,406 _RS19910 Position (kb) 4505 4506Strain fitness (log2 ratio) -2 -1 0 1 2at 4504.182 kb on + strand, within PFLU_RS19890at 4504.182 kb on + strand, within PFLU_RS19890at 4504.182 kb on + strand, within PFLU_RS19890at 4504.182 kb on + strand, within PFLU_RS19890at 4504.182 kb on + strand, within PFLU_RS19890at 4504.182 kb on + strand, within PFLU_RS19890at 4504.182 kb on + strand, within PFLU_RS19890at 4504.183 kb on - strand, within PFLU_RS19890at 4504.183 kb on - strand, within PFLU_RS19890at 4504.183 kb on - strand, within PFLU_RS19890at 4504.552 kb on + strandat 4504.553 kb on - strandat 4505.117 kb on - strandat 4505.225 kb on - strand, within PFLU_RS19900at 4505.501 kb on + strand, within PFLU_RS19900at 4505.547 kb on + strand, within PFLU_RS19900at 4505.547 kb on + strand, within PFLU_RS19900at 4505.548 kb on - strand, within PFLU_RS19900at 4505.548 kb on - strand, within PFLU_RS19900at 4505.548 kb on - strand, within PFLU_RS19900at 4505.970 kb on - strand, within PFLU_RS19905at 4506.365 kb on + strand, within PFLU_RS19905at 4506.366 kb on - strand, within PFLU_RS19905at 4506.366 kb on - strand, within PFLU_RS19905at 4506.366 kb on - strand, within PFLU_RS19905at 4506.366 kb on - strand, within PFLU_RS19905at 4506.430 kb on - strand, within PFLU_RS19905at 4506.484 kb on + strand, within PFLU_RS19905at 4506.548 kb on + strand, within PFLU_RS19905at 4506.548 kb on + strand, within PFLU_RS19905at 4506.548 kb on + strand, within PFLU_RS19905at 4506.548 kb on + strand, within PFLU_RS19905at 4506.549 kb on - strand, within PFLU_RS19905at 4506.549 kb on - strand, within PFLU_RS19905at 4506.549 kb on - strand, within PFLU_RS19905at 4506.549 kb on - strand, within PFLU_RS19905at 4506.549 kb on - strand, within PFLU_RS19905at 4506.549 kb on - strand, within PFLU_RS19905at 4506.549 kb on - strand, within PFLU_RS19905at 4506.549 kb on - strand, within PFLU_RS19905at 4506.678 kb on + strandat 4506.678 kb on + strandat 4506.678 kb on + strandat 4506.678 kb on + strandat 4506.679 kb on - strandat 4506.679 kb on - strandat 4506.679 kb on - strandat 4506.679 kb on - strandat 4506.679 kb on - strandat 4506.679 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucose (C) and L-Glutamine (N); with TAPS
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4,504,182 + PFLU_RS19890 0.83 +0.7
4,504,182 + PFLU_RS19890 0.83 -1.1
4,504,182 + PFLU_RS19890 0.83 -0.7
4,504,182 + PFLU_RS19890 0.83 +0.1
4,504,182 + PFLU_RS19890 0.83 +0.5
4,504,182 + PFLU_RS19890 0.83 -0.2
4,504,182 + PFLU_RS19890 0.83 +0.1
4,504,183 - PFLU_RS19890 0.83 +0.8
4,504,183 - PFLU_RS19890 0.83 -1.4
4,504,183 - PFLU_RS19890 0.83 +0.0
4,504,552 + +0.2
4,504,553 - +0.7
4,505,117 - +0.1
4,505,225 - PFLU_RS19900 0.24 +1.1
4,505,501 + PFLU_RS19900 0.69 -0.3
4,505,547 + PFLU_RS19900 0.76 -1.3
4,505,547 + PFLU_RS19900 0.76 -0.9
4,505,548 - PFLU_RS19900 0.77 -2.0
4,505,548 - PFLU_RS19900 0.77 -1.5
4,505,548 - PFLU_RS19900 0.77 -1.3
4,505,970 - PFLU_RS19905 0.30 -1.7
4,506,365 + PFLU_RS19905 0.69 +0.2
4,506,366 - PFLU_RS19905 0.69 +1.7
4,506,366 - PFLU_RS19905 0.69 +0.2
4,506,366 - PFLU_RS19905 0.69 -0.8
4,506,366 - PFLU_RS19905 0.69 -0.9
4,506,430 - PFLU_RS19905 0.75 -0.0
4,506,484 + PFLU_RS19905 0.80 -2.0
4,506,548 + PFLU_RS19905 0.87 +0.8
4,506,548 + PFLU_RS19905 0.87 +0.4
4,506,548 + PFLU_RS19905 0.87 -0.2
4,506,548 + PFLU_RS19905 0.87 +0.1
4,506,549 - PFLU_RS19905 0.87 -0.3
4,506,549 - PFLU_RS19905 0.87 +0.5
4,506,549 - PFLU_RS19905 0.87 +0.4
4,506,549 - PFLU_RS19905 0.87 +0.3
4,506,549 - PFLU_RS19905 0.87 -1.3
4,506,549 - PFLU_RS19905 0.87 +0.4
4,506,549 - PFLU_RS19905 0.87 -2.0
4,506,549 - PFLU_RS19905 0.87 +1.0
4,506,678 + +2.2
4,506,678 + -0.7
4,506,678 + -1.5
4,506,678 + -0.3
4,506,679 - -1.5
4,506,679 - +1.1
4,506,679 - +0.4
4,506,679 - +1.7
4,506,679 - -0.5
4,506,679 - +0.3

Or see this region's nucleotide sequence