Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS12800

Experiment: Glucose (C) and L-Glutamine (N); with TAPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Glucose (C) and L-Glutamine (N); with TAPS
2,886,160	+		PFLU_RS12790	0.62	+0.1
2,886,160	+		PFLU_RS12790	0.62	+2.0
2,886,160	+		PFLU_RS12790	0.62	-0.0
2,886,161	-		PFLU_RS12790	0.62	+0.1
2,886,161	-		PFLU_RS12790	0.62	-0.1
2,886,161	-		PFLU_RS12790	0.62	-0.6
2,886,161	-		PFLU_RS12790	0.62	-1.4
2,886,161	-		PFLU_RS12790	0.62	+0.8
2,886,161	-		PFLU_RS12790	0.62	-0.2
2,886,161	-		PFLU_RS12790	0.62	+1.0
2,886,161	-		PFLU_RS12790	0.62	+1.7
2,886,161	-		PFLU_RS12790	0.62	+1.3
2,886,161	-		PFLU_RS12790	0.62	-1.2
2,886,161	-		PFLU_RS12790	0.62	-2.0
2,886,161	-		PFLU_RS12790	0.62	+0.6
2,886,274	+		PFLU_RS12790	0.79	-1.6
2,886,274	+		PFLU_RS12790	0.79	-1.0
2,886,275	-		PFLU_RS12790	0.79	-2.0
2,886,275	-		PFLU_RS12790	0.79	-1.0
2,886,275	-		PFLU_RS12790	0.79	+0.3
2,886,275	-		PFLU_RS12790	0.79	+1.5
2,886,275	-		PFLU_RS12790	0.79	-0.8
2,886,277	+		PFLU_RS12790	0.79	-1.1
2,886,277	+		PFLU_RS12790	0.79	+1.7
2,886,305	-		PFLU_RS12790	0.83	+0.8
2,886,343	+		PFLU_RS12790	0.89	+0.3
2,886,343	+		PFLU_RS12790	0.89	+0.8
2,886,343	+		PFLU_RS12790	0.89	+0.2
2,886,343	+		PFLU_RS12790	0.89	+0.7
2,886,343	+		PFLU_RS12790	0.89	-1.7
2,886,343	+		PFLU_RS12790	0.89	+0.9
2,886,344	-		PFLU_RS12790	0.89	+0.3
2,886,344	-		PFLU_RS12790	0.89	-0.8
2,886,344	-		PFLU_RS12790	0.89	-0.9
2,886,344	-		PFLU_RS12790	0.89	-0.1
2,886,344	-		PFLU_RS12790	0.89	+2.9
2,886,344	-		PFLU_RS12790	0.89	-1.5
2,886,344	-		PFLU_RS12790	0.89	+0.7
2,886,344	-		PFLU_RS12790	0.89	-2.0
2,886,344	-		PFLU_RS12790	0.89	-0.7
2,886,358	+				-0.9
2,886,358	+				+1.6
2,886,359	-				-2.2
2,886,359	-				-0.1
2,886,429	+				+4.1
2,886,429	+				+0.1
2,886,430	-				-0.1
2,886,430	-				-0.6
2,886,430	-				+2.7
2,886,504	+		PFLU_RS12795	0.12	+0.3
2,886,504	+		PFLU_RS12795	0.12	-0.9
2,886,504	+		PFLU_RS12795	0.12	-0.1
2,886,504	+		PFLU_RS12795	0.12	-1.4
2,886,505	-		PFLU_RS12795	0.12	-2.5
2,886,505	-		PFLU_RS12795	0.12	-1.0
2,886,505	-		PFLU_RS12795	0.12	+2.3
2,886,524	+		PFLU_RS12795	0.15	-1.9
2,886,524	+		PFLU_RS12795	0.15	+0.3
2,886,525	-		PFLU_RS12795	0.15	+1.3
2,886,525	-		PFLU_RS12795	0.15	-0.3
2,886,525	-		PFLU_RS12795	0.15	-1.9
2,886,525	-		PFLU_RS12795	0.15	+1.3
2,886,570	+		PFLU_RS12795	0.22	+0.3
2,886,570	+		PFLU_RS12795	0.22	-0.6
2,886,571	-		PFLU_RS12795	0.22	-1.3
2,886,606	+		PFLU_RS12795	0.27	-0.2
2,886,606	+		PFLU_RS12795	0.27	-2.0
2,886,606	+		PFLU_RS12795	0.27	-1.3
2,886,607	-		PFLU_RS12795	0.27	-0.2
2,886,607	-		PFLU_RS12795	0.27	-0.5
2,886,646	+		PFLU_RS12795	0.33	+0.3
2,886,646	+		PFLU_RS12795	0.33	-0.2
2,886,647	-		PFLU_RS12795	0.33	-1.3
2,886,647	-		PFLU_RS12795	0.33	+0.3
2,886,660	+		PFLU_RS12795	0.35	+0.4
2,886,660	+		PFLU_RS12795	0.35	-0.0
2,886,661	-		PFLU_RS12795	0.35	-1.5
2,886,661	-		PFLU_RS12795	0.35	+2.5
2,886,661	-		PFLU_RS12795	0.35	+2.3
2,886,661	-		PFLU_RS12795	0.35	-0.9
2,886,822	+		PFLU_RS12795	0.60	-0.4
2,886,822	+		PFLU_RS12795	0.60	-2.0
2,886,822	+		PFLU_RS12795	0.60	+0.3
2,886,823	-		PFLU_RS12795	0.60	-0.1
2,886,823	-		PFLU_RS12795	0.60	-0.0
2,886,823	-		PFLU_RS12795	0.60	+0.9
2,886,823	-		PFLU_RS12795	0.60	-1.6
2,886,837	+		PFLU_RS12795	0.62	-0.5
2,886,837	+		PFLU_RS12795	0.62	-0.3
2,886,838	-		PFLU_RS12795	0.62	-1.5
2,886,838	-		PFLU_RS12795	0.62	-1.4
2,886,838	-		PFLU_RS12795	0.62	+0.8
2,886,838	-		PFLU_RS12795	0.62	-1.2
2,886,999	+		PFLU_RS12795	0.86	+1.3
2,886,999	+		PFLU_RS12795	0.86	+0.2
2,887,000	-		PFLU_RS12795	0.87	+1.8
2,887,000	-		PFLU_RS12795	0.87	-0.4
2,887,000	-		PFLU_RS12795	0.87	+0.7
2,887,000	-		PFLU_RS12795	0.87	-0.5
2,887,035	+				+0.3
2,887,035	+				+0.1
2,887,035	+				+0.9
2,887,035	+				+0.5
2,887,036	-				-0.7
2,887,036	-				-0.0
2,887,036	-				-0.3
2,887,036	-				-0.5
2,887,059	+				+0.5
2,887,060	-				+2.0
2,887,060	-				+1.9
2,887,060	-				-0.3
2,887,060	-				-2.2
2,887,135	+				-0.4
2,887,142	+				+1.1
2,887,142	+				+0.9
2,887,142	+				-0.1
2,887,142	+				-1.5
2,887,143	-				-1.2
2,887,310	+		PFLU_RS12800	0.29	-1.0
2,887,446	+		PFLU_RS12800	0.46	-0.7
2,887,740	-		PFLU_RS12800	0.84	-0.2
2,887,808	-				+0.6
2,887,865	+				-0.0
2,887,877	+				+1.9
2,887,877	+				+0.3
2,887,877	+				-0.4
2,887,877	+				-0.4
2,887,878	-				+0.7
2,887,878	-				+0.3
2,887,878	-				-0.0
2,887,878	-				+1.6
2,887,883	+				+0.6
2,887,883	+				+0.7
2,887,913	+				-0.3
2,887,913	+				-2.0
2,887,913	+				+0.1
2,887,914	-				-0.0
2,887,974	+		PFLU_RS12805	0.23	-2.0
2,887,974	+		PFLU_RS12805	0.23	+0.3
2,887,974	+		PFLU_RS12805	0.23	+0.4
2,887,974	+		PFLU_RS12805	0.23	+1.3
2,887,974	+		PFLU_RS12805	0.23	+0.8
2,887,974	+		PFLU_RS12805	0.23	-0.3
2,887,975	-		PFLU_RS12805	0.23	+0.8
2,888,169	+		PFLU_RS12805	0.73	-0.5
2,888,169	+		PFLU_RS12805	0.73	-0.8
2,888,170	-		PFLU_RS12805	0.73	-0.9
2,888,256	+				+0.2
2,888,256	+				+0.1
2,888,257	-				-0.2
2,888,257	-				+1.3
2,888,397	+				+0.8
2,888,544	-		PFLU_RS12810	0.13	-1.3
2,888,631	-		PFLU_RS12810	0.25	+0.6
2,888,646	+		PFLU_RS12810	0.27	-0.3
2,888,647	-		PFLU_RS12810	0.27	-0.9
2,888,664	+		PFLU_RS12810	0.29	-1.7
2,888,664	+		PFLU_RS12810	0.29	+0.2
2,888,664	+		PFLU_RS12810	0.29	+0.3
2,888,664	+		PFLU_RS12810	0.29	-1.7
2,888,664	+		PFLU_RS12810	0.29	+1.5
2,888,665	-		PFLU_RS12810	0.29	-1.2
2,888,788	-		PFLU_RS12810	0.45	-0.2
2,888,788	-		PFLU_RS12810	0.45	-1.3
2,888,788	-		PFLU_RS12810	0.45	-1.3