Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS06320

Experiment: Glucose (C) and L-Glutamine (N); with TAPS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS06315 and PFLU_RS06320 are separated by 45 nucleotidesPFLU_RS06320 and PFLU_RS06325 are separated by 3 nucleotides PFLU_RS06315: PFLU_RS06315 - outer membrane protein assembly factor BamA, at 1,413,698 to 1,416,085 _RS06315 PFLU_RS06320: PFLU_RS06320 - OmpH family outer membrane protein, at 1,416,131 to 1,416,634 _RS06320 PFLU_RS06325: PFLU_RS06325 - UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase, at 1,416,638 to 1,417,693 _RS06325 Position (kb) 1416 1417Strain fitness (log2 ratio) -2 -1 0 1 2at 1416.083 kb on + strandat 1416.083 kb on + strandat 1416.083 kb on + strandat 1416.083 kb on + strandat 1416.101 kb on + strandat 1416.101 kb on + strandat 1416.101 kb on + strandat 1416.101 kb on + strandat 1416.119 kb on + strandat 1416.218 kb on + strand, within PFLU_RS06320at 1416.257 kb on + strand, within PFLU_RS06320at 1416.257 kb on + strand, within PFLU_RS06320at 1416.257 kb on + strand, within PFLU_RS06320at 1416.257 kb on + strand, within PFLU_RS06320at 1416.257 kb on + strand, within PFLU_RS06320at 1416.422 kb on + strand, within PFLU_RS06320at 1416.587 kb on + strandat 1416.587 kb on + strandat 1416.587 kb on + strandat 1416.587 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucose (C) and L-Glutamine (N); with TAPS
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1,416,083 + +0.3
1,416,083 + +0.1
1,416,083 + -1.4
1,416,083 + +0.1
1,416,101 + +1.3
1,416,101 + -2.0
1,416,101 + +1.9
1,416,101 + +0.1
1,416,119 + -0.8
1,416,218 + PFLU_RS06320 0.17 -0.4
1,416,257 + PFLU_RS06320 0.25 -0.7
1,416,257 + PFLU_RS06320 0.25 +1.5
1,416,257 + PFLU_RS06320 0.25 +0.9
1,416,257 + PFLU_RS06320 0.25 -0.9
1,416,257 + PFLU_RS06320 0.25 -0.7
1,416,422 + PFLU_RS06320 0.58 -1.4
1,416,587 + -0.1
1,416,587 + -1.6
1,416,587 + -1.8
1,416,587 + -1.6

Or see this region's nucleotide sequence