Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS02355

Experiment: Glucose (C) and L-Glutamine (N); with TAPS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS02350 and PFLU_RS02355 are separated by 0 nucleotidesPFLU_RS02355 and PFLU_RS02360 overlap by 4 nucleotides PFLU_RS02350: PFLU_RS02350 - carbamoyltransferase, at 537,073 to 538,830 _RS02350 PFLU_RS02355: PFLU_RS02355 - GNAT family N-acetyltransferase, at 538,831 to 539,727 _RS02355 PFLU_RS02360: PFLU_RS02360 - PIG-L family deacetylase, at 539,724 to 541,124 _RS02360 Position (kb) 538 539 540Strain fitness (log2 ratio) -2 -1 0 1 2 3at 537.844 kb on + strand, within PFLU_RS02350at 537.844 kb on + strand, within PFLU_RS02350at 537.844 kb on + strand, within PFLU_RS02350at 537.844 kb on + strand, within PFLU_RS02350at 537.844 kb on + strand, within PFLU_RS02350at 537.844 kb on + strand, within PFLU_RS02350at 537.910 kb on + strand, within PFLU_RS02350at 537.910 kb on + strand, within PFLU_RS02350at 537.910 kb on + strand, within PFLU_RS02350at 537.910 kb on + strand, within PFLU_RS02350at 537.910 kb on + strand, within PFLU_RS02350at 537.910 kb on + strand, within PFLU_RS02350at 537.910 kb on + strand, within PFLU_RS02350at 537.910 kb on + strand, within PFLU_RS02350at 537.910 kb on + strand, within PFLU_RS02350at 537.910 kb on + strand, within PFLU_RS02350at 537.910 kb on + strand, within PFLU_RS02350at 537.919 kb on + strand, within PFLU_RS02350at 537.919 kb on + strand, within PFLU_RS02350at 537.976 kb on + strand, within PFLU_RS02350at 537.976 kb on + strand, within PFLU_RS02350at 538.138 kb on + strand, within PFLU_RS02350at 538.138 kb on + strand, within PFLU_RS02350at 538.138 kb on + strand, within PFLU_RS02350at 538.138 kb on + strand, within PFLU_RS02350at 538.138 kb on + strand, within PFLU_RS02350at 538.138 kb on + strand, within PFLU_RS02350at 538.186 kb on + strand, within PFLU_RS02350at 538.186 kb on + strand, within PFLU_RS02350at 538.186 kb on + strand, within PFLU_RS02350at 538.201 kb on + strand, within PFLU_RS02350at 538.201 kb on + strand, within PFLU_RS02350at 538.278 kb on + strand, within PFLU_RS02350at 538.278 kb on + strand, within PFLU_RS02350at 538.615 kb on + strand, within PFLU_RS02350at 538.615 kb on + strand, within PFLU_RS02350at 538.630 kb on + strand, within PFLU_RS02350at 538.630 kb on + strand, within PFLU_RS02350at 538.630 kb on + strand, within PFLU_RS02350at 538.630 kb on + strand, within PFLU_RS02350at 538.655 kb on + strandat 538.655 kb on + strandat 538.655 kb on + strandat 538.765 kb on + strandat 538.765 kb on + strandat 538.765 kb on + strandat 538.766 kb on - strandat 538.813 kb on + strandat 538.813 kb on + strandat 538.813 kb on + strandat 538.813 kb on + strandat 538.813 kb on + strandat 538.813 kb on + strandat 538.813 kb on + strandat 538.813 kb on + strandat 538.814 kb on - strandat 538.814 kb on - strandat 538.814 kb on - strandat 538.829 kb on - strandat 538.829 kb on - strandat 538.829 kb on - strandat 538.891 kb on + strandat 538.985 kb on - strand, within PFLU_RS02355at 539.167 kb on + strand, within PFLU_RS02355at 539.168 kb on - strand, within PFLU_RS02355at 539.270 kb on - strand, within PFLU_RS02355at 539.344 kb on - strand, within PFLU_RS02355at 539.362 kb on + strand, within PFLU_RS02355at 539.362 kb on + strand, within PFLU_RS02355at 539.363 kb on - strand, within PFLU_RS02355at 539.363 kb on - strand, within PFLU_RS02355at 539.503 kb on + strand, within PFLU_RS02355at 539.504 kb on - strand, within PFLU_RS02355at 539.504 kb on - strand, within PFLU_RS02355at 539.539 kb on + strand, within PFLU_RS02355at 539.539 kb on + strand, within PFLU_RS02355at 539.539 kb on + strand, within PFLU_RS02355at 539.539 kb on + strand, within PFLU_RS02355at 539.539 kb on + strand, within PFLU_RS02355at 539.540 kb on - strand, within PFLU_RS02355at 539.540 kb on - strand, within PFLU_RS02355at 539.540 kb on - strand, within PFLU_RS02355at 539.540 kb on - strand, within PFLU_RS02355at 539.540 kb on - strand, within PFLU_RS02355at 539.591 kb on + strand, within PFLU_RS02355at 539.591 kb on + strand, within PFLU_RS02355at 539.591 kb on + strand, within PFLU_RS02355at 539.591 kb on + strand, within PFLU_RS02355at 539.591 kb on + strand, within PFLU_RS02355at 539.683 kb on + strandat 539.684 kb on - strandat 539.684 kb on - strandat 539.723 kb on + strandat 539.723 kb on + strandat 539.723 kb on + strandat 539.723 kb on + strandat 539.723 kb on + strandat 539.723 kb on + strandat 539.723 kb on + strandat 539.723 kb on + strandat 539.723 kb on + strandat 539.724 kb on - strandat 539.724 kb on - strandat 539.724 kb on - strandat 539.724 kb on - strandat 539.724 kb on - strandat 539.724 kb on - strandat 539.766 kb on - strandat 539.898 kb on + strand, within PFLU_RS02360at 539.916 kb on + strand, within PFLU_RS02360at 539.916 kb on + strand, within PFLU_RS02360at 539.916 kb on + strand, within PFLU_RS02360at 539.916 kb on + strand, within PFLU_RS02360at 539.917 kb on - strand, within PFLU_RS02360at 539.917 kb on - strand, within PFLU_RS02360at 539.917 kb on - strand, within PFLU_RS02360at 539.923 kb on - strand, within PFLU_RS02360at 540.031 kb on + strand, within PFLU_RS02360at 540.031 kb on + strand, within PFLU_RS02360at 540.031 kb on + strand, within PFLU_RS02360at 540.031 kb on + strand, within PFLU_RS02360at 540.032 kb on - strand, within PFLU_RS02360at 540.032 kb on - strand, within PFLU_RS02360at 540.032 kb on - strand, within PFLU_RS02360at 540.049 kb on + strand, within PFLU_RS02360at 540.049 kb on + strand, within PFLU_RS02360at 540.049 kb on + strand, within PFLU_RS02360at 540.049 kb on + strand, within PFLU_RS02360at 540.049 kb on + strand, within PFLU_RS02360at 540.049 kb on + strand, within PFLU_RS02360at 540.049 kb on + strand, within PFLU_RS02360at 540.050 kb on - strand, within PFLU_RS02360at 540.050 kb on - strand, within PFLU_RS02360at 540.050 kb on - strand, within PFLU_RS02360at 540.050 kb on - strand, within PFLU_RS02360at 540.050 kb on - strand, within PFLU_RS02360at 540.050 kb on - strand, within PFLU_RS02360at 540.050 kb on - strand, within PFLU_RS02360at 540.050 kb on - strand, within PFLU_RS02360at 540.050 kb on - strand, within PFLU_RS02360at 540.050 kb on - strand, within PFLU_RS02360at 540.129 kb on + strand, within PFLU_RS02360at 540.129 kb on + strand, within PFLU_RS02360at 540.129 kb on + strand, within PFLU_RS02360at 540.130 kb on - strand, within PFLU_RS02360at 540.130 kb on - strand, within PFLU_RS02360at 540.313 kb on - strand, within PFLU_RS02360at 540.313 kb on - strand, within PFLU_RS02360at 540.313 kb on - strand, within PFLU_RS02360at 540.313 kb on - strand, within PFLU_RS02360at 540.376 kb on - strand, within PFLU_RS02360at 540.376 kb on - strand, within PFLU_RS02360

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucose (C) and L-Glutamine (N); with TAPS
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537,844 + PFLU_RS02350 0.44 +0.4
537,844 + PFLU_RS02350 0.44 +0.3
537,844 + PFLU_RS02350 0.44 +0.5
537,844 + PFLU_RS02350 0.44 -1.1
537,844 + PFLU_RS02350 0.44 +0.1
537,844 + PFLU_RS02350 0.44 -0.2
537,910 + PFLU_RS02350 0.48 -0.4
537,910 + PFLU_RS02350 0.48 +1.9
537,910 + PFLU_RS02350 0.48 +1.1
537,910 + PFLU_RS02350 0.48 +0.9
537,910 + PFLU_RS02350 0.48 -0.1
537,910 + PFLU_RS02350 0.48 +2.5
537,910 + PFLU_RS02350 0.48 +1.2
537,910 + PFLU_RS02350 0.48 -1.6
537,910 + PFLU_RS02350 0.48 -1.0
537,910 + PFLU_RS02350 0.48 +1.4
537,910 + PFLU_RS02350 0.48 -0.1
537,919 + PFLU_RS02350 0.48 +0.3
537,919 + PFLU_RS02350 0.48 +1.0
537,976 + PFLU_RS02350 0.51 -0.4
537,976 + PFLU_RS02350 0.51 -1.3
538,138 + PFLU_RS02350 0.61 -0.1
538,138 + PFLU_RS02350 0.61 +0.6
538,138 + PFLU_RS02350 0.61 -0.6
538,138 + PFLU_RS02350 0.61 -0.9
538,138 + PFLU_RS02350 0.61 -0.6
538,138 + PFLU_RS02350 0.61 -1.1
538,186 + PFLU_RS02350 0.63 -0.3
538,186 + PFLU_RS02350 0.63 +1.1
538,186 + PFLU_RS02350 0.63 -0.9
538,201 + PFLU_RS02350 0.64 -2.5
538,201 + PFLU_RS02350 0.64 -0.9
538,278 + PFLU_RS02350 0.69 -0.3
538,278 + PFLU_RS02350 0.69 -0.2
538,615 + PFLU_RS02350 0.88 +0.3
538,615 + PFLU_RS02350 0.88 +0.6
538,630 + PFLU_RS02350 0.89 +0.3
538,630 + PFLU_RS02350 0.89 -1.4
538,630 + PFLU_RS02350 0.89 -0.5
538,630 + PFLU_RS02350 0.89 -0.9
538,655 + -1.9
538,655 + +3.1
538,655 + +0.1
538,765 + +0.6
538,765 + +1.1
538,765 + +0.4
538,766 - +0.5
538,813 + -1.5
538,813 + -0.6
538,813 + +1.3
538,813 + -0.2
538,813 + -0.1
538,813 + +0.3
538,813 + +0.4
538,813 + -2.1
538,814 - -1.1
538,814 - +0.7
538,814 - -0.2
538,829 - -0.0
538,829 - +0.5
538,829 - -1.5
538,891 + +1.5
538,985 - PFLU_RS02355 0.17 -0.7
539,167 + PFLU_RS02355 0.37 +2.1
539,168 - PFLU_RS02355 0.38 -2.3
539,270 - PFLU_RS02355 0.49 +0.8
539,344 - PFLU_RS02355 0.57 +2.5
539,362 + PFLU_RS02355 0.59 -0.9
539,362 + PFLU_RS02355 0.59 -0.7
539,363 - PFLU_RS02355 0.59 +0.5
539,363 - PFLU_RS02355 0.59 +0.8
539,503 + PFLU_RS02355 0.75 -0.5
539,504 - PFLU_RS02355 0.75 -0.5
539,504 - PFLU_RS02355 0.75 -0.1
539,539 + PFLU_RS02355 0.79 +1.7
539,539 + PFLU_RS02355 0.79 +0.1
539,539 + PFLU_RS02355 0.79 -0.5
539,539 + PFLU_RS02355 0.79 -1.2
539,539 + PFLU_RS02355 0.79 +0.1
539,540 - PFLU_RS02355 0.79 -1.7
539,540 - PFLU_RS02355 0.79 -0.4
539,540 - PFLU_RS02355 0.79 -1.9
539,540 - PFLU_RS02355 0.79 -0.9
539,540 - PFLU_RS02355 0.79 +0.2
539,591 + PFLU_RS02355 0.85 -0.5
539,591 + PFLU_RS02355 0.85 -1.5
539,591 + PFLU_RS02355 0.85 -0.8
539,591 + PFLU_RS02355 0.85 -1.8
539,591 + PFLU_RS02355 0.85 -1.8
539,683 + +0.1
539,684 - +0.1
539,684 - +0.5
539,723 + -1.2
539,723 + -0.3
539,723 + -2.7
539,723 + -1.2
539,723 + +0.5
539,723 + -0.3
539,723 + -0.2
539,723 + +0.5
539,723 + -1.4
539,724 - -0.5
539,724 - +1.1
539,724 - +1.9
539,724 - +0.2
539,724 - -1.2
539,724 - +0.6
539,766 - -1.2
539,898 + PFLU_RS02360 0.12 +1.7
539,916 + PFLU_RS02360 0.14 +0.2
539,916 + PFLU_RS02360 0.14 -0.7
539,916 + PFLU_RS02360 0.14 -1.5
539,916 + PFLU_RS02360 0.14 +1.8
539,917 - PFLU_RS02360 0.14 -1.2
539,917 - PFLU_RS02360 0.14 +0.4
539,917 - PFLU_RS02360 0.14 +0.1
539,923 - PFLU_RS02360 0.14 -0.1
540,031 + PFLU_RS02360 0.22 -0.3
540,031 + PFLU_RS02360 0.22 +1.4
540,031 + PFLU_RS02360 0.22 +0.0
540,031 + PFLU_RS02360 0.22 -0.5
540,032 - PFLU_RS02360 0.22 -0.0
540,032 - PFLU_RS02360 0.22 +1.7
540,032 - PFLU_RS02360 0.22 +1.2
540,049 + PFLU_RS02360 0.23 +0.7
540,049 + PFLU_RS02360 0.23 +1.1
540,049 + PFLU_RS02360 0.23 -0.4
540,049 + PFLU_RS02360 0.23 -1.6
540,049 + PFLU_RS02360 0.23 +0.9
540,049 + PFLU_RS02360 0.23 +1.3
540,049 + PFLU_RS02360 0.23 -1.4
540,050 - PFLU_RS02360 0.23 +1.4
540,050 - PFLU_RS02360 0.23 -0.2
540,050 - PFLU_RS02360 0.23 +0.9
540,050 - PFLU_RS02360 0.23 -2.0
540,050 - PFLU_RS02360 0.23 -2.0
540,050 - PFLU_RS02360 0.23 -1.0
540,050 - PFLU_RS02360 0.23 +0.6
540,050 - PFLU_RS02360 0.23 +0.1
540,050 - PFLU_RS02360 0.23 +0.3
540,050 - PFLU_RS02360 0.23 +0.0
540,129 + PFLU_RS02360 0.29 +0.1
540,129 + PFLU_RS02360 0.29 +0.3
540,129 + PFLU_RS02360 0.29 -0.0
540,130 - PFLU_RS02360 0.29 -0.6
540,130 - PFLU_RS02360 0.29 -1.2
540,313 - PFLU_RS02360 0.42 +1.6
540,313 - PFLU_RS02360 0.42 -0.4
540,313 - PFLU_RS02360 0.42 +0.7
540,313 - PFLU_RS02360 0.42 -0.2
540,376 - PFLU_RS02360 0.47 -2.0
540,376 - PFLU_RS02360 0.47 -1.0

Or see this region's nucleotide sequence