Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS23885

Experiment: Glucose (C) and L-Glutamine (N); with TAPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Glucose (C) and L-Glutamine (N); with TAPS
5,352,083	+		PFLU_RS23880	0.23	-1.0
5,352,083	+		PFLU_RS23880	0.23	+0.6
5,352,083	+		PFLU_RS23880	0.23	+0.8
5,352,083	+		PFLU_RS23880	0.23	+0.5
5,352,083	+		PFLU_RS23880	0.23	-2.9
5,352,083	+		PFLU_RS23880	0.23	-2.4
5,352,083	+		PFLU_RS23880	0.23	+1.2
5,352,083	+		PFLU_RS23880	0.23	-0.3
5,352,083	+		PFLU_RS23880	0.23	+1.5
5,352,084	-		PFLU_RS23880	0.24	+0.2
5,352,084	-		PFLU_RS23880	0.24	-0.3
5,352,084	-		PFLU_RS23880	0.24	+1.5
5,352,084	-		PFLU_RS23880	0.24	-1.0
5,352,142	+		PFLU_RS23880	0.30	+1.5
5,352,204	-		PFLU_RS23880	0.36	-0.1
5,352,212	+		PFLU_RS23880	0.37	-0.2
5,352,212	+		PFLU_RS23880	0.37	-0.7
5,352,212	+		PFLU_RS23880	0.37	+0.9
5,352,212	+		PFLU_RS23880	0.37	+1.9
5,352,213	-		PFLU_RS23880	0.37	-0.2
5,352,213	-		PFLU_RS23880	0.37	+1.1
5,352,213	-		PFLU_RS23880	0.37	-1.7
5,352,213	-		PFLU_RS23880	0.37	+0.7
5,352,213	-		PFLU_RS23880	0.37	+0.2
5,352,213	-		PFLU_RS23880	0.37	-2.0
5,352,218	+		PFLU_RS23880	0.38	-1.4
5,352,218	+		PFLU_RS23880	0.38	-0.5
5,352,218	+		PFLU_RS23880	0.38	+0.8
5,352,218	+		PFLU_RS23880	0.38	+1.0
5,352,219	-		PFLU_RS23880	0.38	+0.3
5,352,219	-		PFLU_RS23880	0.38	-0.0
5,352,368	-		PFLU_RS23880	0.53	-1.5
5,352,484	+		PFLU_RS23880	0.65	+0.5
5,352,484	+		PFLU_RS23880	0.65	+1.7
5,352,488	+		PFLU_RS23880	0.66	-1.0
5,352,488	+		PFLU_RS23880	0.66	-1.0
5,352,489	-		PFLU_RS23880	0.66	+0.7
5,352,489	-		PFLU_RS23880	0.66	+1.9
5,352,583	+		PFLU_RS23880	0.76	+0.4
5,352,584	-		PFLU_RS23880	0.76	-0.2
5,352,584	-		PFLU_RS23880	0.76	+0.7
5,352,587	+		PFLU_RS23880	0.76	-1.0
5,352,587	+		PFLU_RS23880	0.76	-0.7
5,352,633	+		PFLU_RS23880	0.81	-0.2
5,352,633	+		PFLU_RS23880	0.81	+1.5
5,352,633	+		PFLU_RS23880	0.81	+0.4
5,352,633	+		PFLU_RS23880	0.81	+0.4
5,352,633	+		PFLU_RS23880	0.81	+0.2
5,352,633	+		PFLU_RS23880	0.81	-2.0
5,352,634	-		PFLU_RS23880	0.81	+0.5
5,352,662	+		PFLU_RS23880	0.84	-0.2
5,352,662	+		PFLU_RS23880	0.84	-0.9
5,352,662	+		PFLU_RS23880	0.84	+1.1
5,352,663	-		PFLU_RS23880	0.84	+0.7
5,352,663	-		PFLU_RS23880	0.84	+0.7
5,352,663	-		PFLU_RS23880	0.84	+1.0
5,352,663	-		PFLU_RS23880	0.84	-0.7
5,352,663	-		PFLU_RS23880	0.84	-0.4
5,352,663	-		PFLU_RS23880	0.84	-1.5
5,352,663	-		PFLU_RS23880	0.84	+0.5
5,352,663	-		PFLU_RS23880	0.84	+2.2
5,352,663	-		PFLU_RS23880	0.84	-0.6
5,352,815	+				+1.2
5,352,815	+				-0.9
5,352,815	+				-0.5
5,352,815	+				+0.5
5,352,816	-				-1.9
5,352,816	-				+0.4
5,352,816	-				+1.9
5,352,816	-				-1.2
5,352,837	+				+1.4
5,352,837	+				-0.5
5,352,891	+				+1.5
5,352,891	+				-1.1
5,352,891	+				+0.9
5,352,891	+				+0.4
5,352,891	+				-1.7
5,352,891	+				-1.5
5,352,891	+				-1.9
5,352,891	+				+0.1
5,352,891	+				+1.0
5,352,891	+				-1.9
5,352,891	+				-0.5
5,352,891	+				+0.5
5,352,891	+				+1.0
5,352,891	+				-1.0
5,352,891	+				+0.5
5,352,891	+				-1.0
5,352,891	+				+0.9
5,352,891	+				-0.2
5,352,891	+				+0.2
5,352,891	+				-1.6
5,352,891	+				-0.4
5,352,891	+				+0.4
5,352,891	+				+1.6
5,352,891	+				-0.0
5,352,891	+				-2.3
5,352,891	+				-1.0
5,352,891	+				-0.9
5,352,891	+				-0.5
5,352,891	+				+1.1
5,352,891	+				+1.1
5,352,891	+				-1.6
5,352,891	+				+0.5
5,352,891	+				-1.2
5,352,891	+				-0.3
5,352,891	+				-0.6
5,352,892	-				-2.0
5,352,892	-				-1.7
5,352,892	-				+1.3
5,352,892	-				+1.1
5,352,892	-				-0.2
5,352,892	-				-0.5
5,352,892	-				-0.5
5,352,892	-				-0.3
5,352,892	-				-0.4
5,352,892	-				-0.0
5,352,892	-				-1.1
5,352,892	-				-1.0
5,352,892	-				+1.4
5,352,892	-				-1.2
5,352,892	-				-1.0
5,352,892	-				+1.2
5,352,892	-				-0.9
5,352,892	-				-0.4
5,352,892	-				-0.2
5,352,892	-				+2.0
5,352,892	-				-1.0
5,352,892	-				-1.6
5,352,892	-				-1.0
5,352,923	-				-0.5
5,352,931	-				+0.4
5,352,931	-				-2.0
5,352,942	-				-1.5
5,352,942	-				+0.2
5,352,942	-				+0.1
5,353,070	+				+0.0
5,353,103	-		PFLU_RS23885	0.12	-1.3
5,353,103	-		PFLU_RS23885	0.12	-0.6
5,353,103	-		PFLU_RS23885	0.12	-2.5
5,353,103	-		PFLU_RS23885	0.12	-0.1
5,353,750	-		PFLU_RS23885	0.68	+0.1
5,354,172	+				+1.6
5,354,172	+				+1.2
5,354,226	+				+1.6
5,354,283	+				+0.5
5,354,283	+				+1.1
5,354,283	+				-0.5
5,354,283	+				+0.5
5,354,283	+				-1.6
5,354,283	+				-1.0
5,354,283	+				-0.4
5,354,283	+				+1.9
5,354,283	+				+0.1
5,354,283	+				-0.3
5,354,283	+				+0.6
5,354,283	+				-0.5
5,354,283	+				+1.0
5,354,283	+				+2.9
5,354,283	+				-1.2
5,354,283	+				-1.0
5,354,283	+				+0.1
5,354,284	-				+0.0
5,354,284	-				-1.6
5,354,284	-				-0.8
5,354,284	-				-0.5
5,354,284	-				-1.0
5,354,284	-				+0.0
5,354,284	-				-0.7
5,354,284	-				-0.6
5,354,284	-				+1.2
5,354,284	-				-1.0
5,354,284	-				+0.8
5,354,284	-				+1.8
5,354,284	-				+0.6
5,354,284	-				+0.6
5,354,284	-				+0.3
5,354,284	-				-0.5
5,354,284	-				+0.4
5,354,284	-				-2.0
5,354,574	+		PFLU_RS23890	0.24	-1.3
5,354,574	+		PFLU_RS23890	0.24	+0.1
5,354,574	+		PFLU_RS23890	0.24	-0.5
5,354,574	+		PFLU_RS23890	0.24	+0.5
5,354,575	-		PFLU_RS23890	0.24	-1.2
5,354,575	-		PFLU_RS23890	0.24	-0.0
5,354,658	+		PFLU_RS23890	0.31	-0.2
5,354,658	+		PFLU_RS23890	0.31	-1.0
5,354,659	-		PFLU_RS23890	0.31	+0.2
5,354,659	-		PFLU_RS23890	0.31	-1.8
5,354,668	-		PFLU_RS23890	0.31	-0.6
5,354,668	-		PFLU_RS23890	0.31	+1.5
5,354,668	-		PFLU_RS23890	0.31	-1.2